mRNA_H-elongata_contig81403.15803.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81403.15803.1
Unique NamemRNA_H-elongata_contig81403.15803.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81403.15803.1 vs. uniprot
Match: D7FYP1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYP1_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 4.250e-34
Identity = 102/233 (43.78%), Postives = 123/233 (52.79%), Query Frame = 1 
Query:    1 SCRGVHEISPMKAASGGILHTLFQHSHPRFFSSSSVEGQXXXXXXXXVSGRFPQPARLRHLPSP-------TIASSTPAPAGSAGASSG--REAGTPPRNLHNRRRRVDPERGDSDWEEAGKSSATRNFGRGLPRCLVIHGTSDGTVPFSQTTAIAAALRALGVPTTVRLELGGDHFDTIGDLMFNEGAPVEAAIVGFTSTEAAESARTQRRASASLTTPTASTASRHPQPRL 672
            S RGVHEISPMKAA+GG LHTL  +SH  F  + S                 P   +     +P       T +     P G+   S G  R+ G+   +L ++   V    G     EAG     R  GR LPR LV+HGTSD TVPFSQT A+AAALRALGVPT VR E GGDHF  +G LMF++G+ VE AI  FTS +A E AR +R+       P      RHPQ RL
Sbjct:  293 SWRGVHEISPMKAANGGRLHTLSDYSHQCFLGTGSHRATRTWSRPPLAPSSGPSQHQQPRAQAPAKGEEPSTYSPRDTQPRGNVVMSGGGRRDGGS---SLASKEP-VALGAGGVPVPEAGDRG--RGLGRRLPRVLVMHGTSDATVPFSQTAAVAAALRALGVPTVVRFEQGGDHFGMVGQLMFDQGSLVETAISQFTSNQAKEDARKERQGRDQGAPP------RHPQARL 513
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81403.15803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYP1_ECTSI4.250e-3443.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81403contigH-elongata_contig81403:1353..2428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size675
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81403.15803.1prot_H-elongata_contig81403.15803.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81403 1353..2398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931221.7322628-CDS-H-elongata_contig81403:1352..15341622931221.7322628-CDS-H-elongata_contig81403:1352..1534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81403 1353..1534 -
1691679747.8574822-CDS-H-elongata_contig81403:1352..15341691679747.8574822-CDS-H-elongata_contig81403:1352..1534Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81403 1353..1534 -
1622931221.7470295-CDS-H-elongata_contig81403:1935..23981622931221.7470295-CDS-H-elongata_contig81403:1935..2398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81403 1936..2398 -
1691679747.8713305-CDS-H-elongata_contig81403:1935..23981691679747.8713305-CDS-H-elongata_contig81403:1935..2398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81403 1936..2398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931221.7599933-UTR-H-elongata_contig81403:2398..24281622931221.7599933-UTR-H-elongata_contig81403:2398..2428Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81403 2399..2428 -
1691679747.8816097-UTR-H-elongata_contig81403:2398..24281691679747.8816097-UTR-H-elongata_contig81403:2398..2428Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81403 2399..2428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81403.15803.1

>prot_H-elongata_contig81403.15803.1 ID=prot_H-elongata_contig81403.15803.1|Name=mRNA_H-elongata_contig81403.15803.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
MKAASGGILHTLFQHSHPRFFSSSSVEGQGEGGGGAGVSGRFPQPARLRH
LPSPTIASSTPAPAGSAGASSGREAGTPPRNLHNRRRRVDPERGDSDWEE
AGKSSATRNFGRGLPRCLVIHGTSDGTVPFSQTTAIAAALRALGVPTTVR
LELGGDHFDTIGDLMFNEGAPVEAAIVGFTSTEAAESARTQRRASASLTT
PTASTASRHPQPRL*
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mRNA from alignment at H-elongata_contig81403:1353..2428-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81403.15803.1 ID=mRNA_H-elongata_contig81403.15803.1|Name=mRNA_H-elongata_contig81403.15803.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1076bp|location=Sequence derived from alignment at H-elongata_contig81403:1353..2428- (Himanthalia elongata Himel1 dioecious)
TCATGCAGGGGAGTCCACGAGATCTCACCCATGAAGGCGGCCAGCGGGGG
AATCCTTCACACCCTATTCCAGCACTCACACCCGCGATTCTTCTCCTCTT
CGTCCGTCGAAGGCCAGGGCGAGGGCGGTGGCGGCGCTGGTGTCAGCGGC
AGGTTTCCGCAGCCGGCGCGCCTTCGCCATTTGCCCTCACCAACGATTGC
CTCGTCAACGCCCGCCCCCGCGGGTAGCGCCGGAGCATCGAGCGGCCGAG
AGGCAGGTACACCGCCGCGAAATCTTCATAACAGAAGGCGGAGGGTTGAT
CCAGAGCGAGGGGATTCGGATTGGGAGGAGGCGGGGAAAAGCAGTGCCAC
TAGAAATTTCGGCCGGGGGCTGCCTCGTTGCCTAGTGATACACGGCACGT
CGGACGGCACGGTTCCTTTCTCTCAGACCACGGCGATCGCGGCGGCGCTG
AGAGCCCTCGGGGTGCCTACGACCGTCCGCCTCGAGCTCGGAGGTGGGTG
GGACGTTTTTTTTGGGGCCGGGGCGGGAGAATGTGGTAGACGATTTTCCC
CACATTATAAAGTAATGATTCTACAAATCAATGTTTCAACAAGCTCTCTA
TAGTATATATGCCTTTTTATATATATAGAGAGAGAACAAAGAGAAATGAA
GGGAAATATGAGGTATACCGAAAGACAATTGGTCGTTTGTCTCGAAAGAG
TGGAATAAAATGTTGTACGTTTACTGTAGATATTTGCATTGATTGCCGTG
TGCGCCGATCGGCTGGTCTTCTTGTGAGCTCCTCCGTCAACGCGTGACGA
TTGAGCACCTCTCCCCGTTTCCCCTTTTCGTTGTCTCGGACTATGTCGTC
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGGAGACC
ACTTCGACACTATTGGAGACTTGATGTTCAACGAGGGCGCGCCGGTGGAG
GCGGCCATCGTAGGCTTCACCTCGACGGAGGCGGCGGAGAGCGCCCGAAC
CCAGCGCCGCGCGAGCGCCTCTCTTACTACACCCACTGCATCAACTGCAT
CACGTCATCCGCAACCCAGGCTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig81403:1353..2428-

>mRNA_H-elongata_contig81403.15803.1 ID=mRNA_H-elongata_contig81403.15803.1|Name=mRNA_H-elongata_contig81403.15803.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1290bp|location=Sequence derived from alignment at H-elongata_contig81403:1353..2428- (Himanthalia elongata Himel1 dioecious)
ATGAAGGCGGCCAGCGGGGGAATCCTTCACACCCTATTCCAGCACTCACA
CCCGCGATTCTTCTCCTCTTCGTCCGTCGAAGGCCAGGGCGAGGGCGGTG
GCGGCGCTGGTGTCAGCGGCAGGTTTCCGCAGCCGGCGCGCCTTCGCCAT
TTGCCCTCACCAACGATTGCCTCGTCAACGCCCGCCCCCGCGGGTAGCGC
CGGAGCATCGAGCGGCCGAGAGGCAGGTACACCGCCGCGAAATCTTCATA
ACAGAAGGCGGAGGGTTGATCCAGAGCGAGGGGATTCGGATTGGGAGGAG
GCGGGGAAAAGCAGTGCCACTAGAAATTTCGGCCGGGGGCTGCCTCGTTG
CCTAGTGATACACGGCACGTCGGACGGCACGGTTCCTTTCTCTCAGACCA
CGGCGATCGCGGCGGCGCTGAGAGCCCTCGGGGTGCCTACGACCGTCCGC
CTCGAGCTCGGAGATGAAGGCGGCCAGCGGGGGAATCCTTCACACCCTAT
TCCAGCACTCACACCCGCGATTCTTCTCCTCTTCGTCCGTCGAAGGCCAG
GGCGAGGGCGGTGGCGGCGCTGGTGTCAGCGGCAGGTTTCCGCAGCCGGC
GCGCCTTCGCCATTTGCCCTCACCAACGATTGCCTCGTCAACGCCCGCCC
CCGCGGGTAGCGCCGGAGCATCGAGCGGCCGAGAGGCAGGTACACCGCCG
CGAAATCTTCATAACAGAAGGCGGAGGGTTGATCCAGAGCGAGGGGATTC
GGATTGGGAGGAGGCGGGGAAAAGCAGTGCCACTAGAAATTTCGGCCGGG
GGCTGCCTCGTTGCCTAGTGATACACGGCACGTCGGACGGCACGGTTCCT
TTCTCTCAGACCACGGCGATCGCGGCGGCGCTGAGAGCCCTCGGGGTGCC
TACGACCGTCCGCCTCGAGCTCGGAGGAGACCACTTCGACACTATTGGAG
ACTTGATGTTCAACGAGGGCGCGCCGGTGGAGGCGGCCATCGTAGGCTTC
ACCTCGACGGAGGCGGCGGAGAGCGCCCGAACCCAGCGCCGCGCGAGCGC
CTCTCTTACTACACCCACTGCATCAACTGCATCACGTCATCCGCAACCCA
GGCTGTAGGAGACCACTTCGACACTATTGGAGACTTGATGTTCAACGAGG
GCGCGCCGGTGGAGGCGGCCATCGTAGGCTTCACCTCGACGGAGGCGGCG
GAGAGCGCCCGAACCCAGCGCCGCGCGAGCGCCTCTCTTACTACACCCAC
TGCATCAACTGCATCACGTCATCCGCAACCCAGGCTGTAG
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