mRNA_H-elongata_contig8138.15800.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8138.15800.1
Unique NamemRNA_H-elongata_contig8138.15800.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig8138.15800.1 vs. uniprot
Match: A0A6H5K8D8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D8_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 1.010e-75
Identity = 109/153 (71.24%), Postives = 122/153 (79.74%), Query Frame = 1 
Query:  628 SAVDGTECNTTLYSGWYDIPYSGGLLDDLNDFWRFSDAELTNGHALDAASSACKVMMKTLRLDRAGRNGPVADKYIYDVMCAKECVLSDSLREKAMLVTGCTCLQLSTQPSEAVYNSPGDWCTANSGRILCETFDHCGLWNCRISDFMCPRCE 1086
            S  D   CN TLY  WYD PYSG LL+DL DFW F DAELTNG AL+  SS C+VMM TLRLDRAGRNGPV DKYIYDVMCA EC LSDS+RE+AM ++ CTCL+LSTQPS  +Y++ GDWC  NSGR+LCETF  CG+WNCRISDFMCPR E
Sbjct:   71 SVQDALTCNVTLYDQWYDSPYSGALLEDLVDFWIFPDAELTNGQALEVVSSTCRVMMDTLRLDRAGRNGPVQDKYIYDVMCANECTLSDSIREEAMELSSCTCLELSTQPSNPIYHTEGDWCVENSGRMLCETFGQCGVWNCRISDFMCPRYE 223
[Close]
BLAST of mRNA_H-elongata_contig8138.15800.1 vs. uniprot
Match: A0A835Z9M4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M4_9STRA)

HSP 1 Score: 176 bits (446), Expect = 4.770e-50
Identity = 80/146 (54.79%), Postives = 100/146 (68.49%), Query Frame = 1 
Query:  649 CNTTLYSGWYDIPYSGGLLDDLNDFWRFSDAELTNGHALDAASSACKVMMKTLRLDRAGRNGPVADKYIYDVMCAKECVLSDSLREKAMLVTGCTCLQLSTQPSEAVYNSPGDWCTANSGRILCETFDHCGLWNCRISDFMCPRCE 1086
            C+  LY  WY+  Y G L +  N FW FS AEL+NG A++ A++ CK+ ++ LRLDRAGR+GPV + +I+DVMC+ ECV SD+LR  AM   GC CL LSTQ     Y + GDWC  NSGR+LC TF  CG W CR+ DFMCPR E
Sbjct:   36 CSLDLYQAWYNKAYEGPLQNTPN-FWIFSSAELSNGQAMEKAATKCKLKLEQLRLDRAGRHGPVEEWWIFDVMCSDECVQSDALRRAAMAACGCDCLALSTQAGAPSYRAAGDWCAHNSGRLLCATFYQCGTWACRVGDFMCPRFE 180
[Close]
BLAST of mRNA_H-elongata_contig8138.15800.1 vs. uniprot
Match: A0A482SVE4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SVE4_9ARCH)

HSP 1 Score: 140 bits (353), Expect = 3.380e-36
Identity = 67/156 (42.95%), Postives = 95/156 (60.90%), Query Frame = 1 
Query:  628 SAVDGTECNTTLYSGWYDIPYSGGLLDDLNDFWRFSDAE---LTNGHALDAASSACKVMMKTLRLDRAGRNGPVADKYIYDVMCAKECVLSDSLREKAMLVTGCTCLQLSTQPSEAVYNSPGDWCTANSGRILCETFDHCGLWNCRISDFMCPRCE 1086
            S+++ T CN T Y  W +  Y G L  D + FW +       L N  A+  A   C+ M ++L L R+GR GP+  +  Y +MC   C+ +D+L E AM +TGC+CL+LSTQP +  +   GDWC+ N+ R+LC+   +CG+WNCRI DFMCPR E
Sbjct:   28 SSIEST-CNLTRYQQWLNERYIGFLASD-SAFWMYQTQPQIVLNNFFAMSLALRGCQRMFESLYLYRSGRMGPINIQDSYKIMCRDYCIENDNLHEIAMNITGCSCLELSTQPGDISFTKEGDWCSQNTARLLCDIVGYCGVWNCRIDDFMCPRYE 181
[Close]
BLAST of mRNA_H-elongata_contig8138.15800.1 vs. uniprot
Match: A0A7S4EDD8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDD8_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 6.680e-19
Identity = 53/148 (35.81%), Postives = 71/148 (47.97%), Query Frame = 1 
Query:  739 AELTNGHALDAASSACKVMMKTLRLDRAGRNGPVADKYIYDVMCAKECVLSDSLREKAMLVTGCTCLQLSTQPS--------EAV------------------------YNSPGDWCTANSGRILCETFDHCGLWNCRISDFMCPRCE 1086
            A L NG  ++ A+  C+  +  L+ DRAGR+G V +  I+  MC+ EC  SD L  +AM  + CTC  LS  P         E +                        Y + G+ C  NSGRI+C   D CG+W CR+ DFMCPR E
Sbjct:   89 AYLGNGQVMERAAQMCERALYALKTDRAGRHGDVDNYAIFGPMCSDECRDSDGLHLEAMAKSSCTCRDLSPAPPGHGHGGVLEEIAHWGVGAPWTWDGQGIVGYERLGPYRTEGEVCQRNSGRIMCRVLDRCGVWACRLGDFMCPRHE 236
[Close]
BLAST of mRNA_H-elongata_contig8138.15800.1 vs. uniprot
Match: A0A0N7L7F1_PLAHL (FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7F1_PLAHL)

HSP 1 Score: 82.4 bits (202), Expect = 1.430e-13
Identity = 44/132 (33.33%), Postives = 72/132 (54.55%), Query Frame = 1 
Query:  691 SGGLLDDLNDFWRFSDAELTNGHALDAASSACKVMMKTLRLDRAGRNGPVADKYIYDVMCAKECVLSDSLREKAMLVTGCTCLQLSTQPSEAVYNSPGDWCTANSGRILCETFDHCGLWNCRISDFMCPRCE 1086
            + GL  DL+ +  F +++  +GH +   ++ C+  +  L+  RAG  GP+  + +  VMC+ EC+ +D L + AML++ CTC ++S +          D+C  NS R+LC     CG W C + DF C R E
Sbjct:   49 ANGLQCDLDLYNAFIESK--DGHDIFIMAALCESRIVHLKHARAGWYGPIPQEDLAMVMCSDECLRNDELHKTAMLLSHCTCAEVSAETFVQ-----HDFCLENSARLLCTHLSECGHWGCELEDFNCLRYE 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8138.15800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K8D8_9PHAE1.010e-7571.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9M4_9STRA4.770e-5054.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482SVE4_9ARCH3.380e-3642.95Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S4EDD8_9STRA6.680e-1935.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0N7L7F1_PLAHL1.430e-1333.33FKBP-type peptidyl-prolyl cis-trans isomerase n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8138contigH-elongata_contig8138:6450..7704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.0
Seed ortholog evalue2.9e-62
Seed eggNOG ortholog2880.D7FY74
EggNOG OGs2CP61@1,2S42B@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_003540.1
Exons3
Model size1086
Cds size570
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8138.15800.1prot_H-elongata_contig8138.15800.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8138 6450..7158 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931221.4930148-CDS-H-elongata_contig8138:6449..65251622931221.4930148-CDS-H-elongata_contig8138:6449..6525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8138 6450..6525 -
1691679747.754974-CDS-H-elongata_contig8138:6449..65251691679747.754974-CDS-H-elongata_contig8138:6449..6525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8138 6450..6525 -
1622931221.513444-CDS-H-elongata_contig8138:6664..71581622931221.513444-CDS-H-elongata_contig8138:6664..7158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8138 6665..7158 -
1691679747.7646785-CDS-H-elongata_contig8138:6664..71581691679747.7646785-CDS-H-elongata_contig8138:6664..7158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8138 6665..7158 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931221.5322242-UTR-H-elongata_contig8138:7158..74191622931221.5322242-UTR-H-elongata_contig8138:7158..7419Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8138 7159..7419 -
1691679747.7727745-UTR-H-elongata_contig8138:7158..74191691679747.7727745-UTR-H-elongata_contig8138:7158..7419Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8138 7159..7419 -
1622931221.5495398-UTR-H-elongata_contig8138:7449..77041622931221.5495398-UTR-H-elongata_contig8138:7449..7704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8138 7450..7704 -
1691679747.7820659-UTR-H-elongata_contig8138:7449..77041691679747.7820659-UTR-H-elongata_contig8138:7449..7704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8138 7450..7704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8138.15800.1

>prot_H-elongata_contig8138.15800.1 ID=prot_H-elongata_contig8138.15800.1|Name=mRNA_H-elongata_contig8138.15800.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp
MGLSRRYLVMCFVLLMSRIDVVHSVNPTMLLVKSSDISAVDGTECNTTLY
SGWYDIPYSGGLLDDLNDFWRFSDAELTNGHALDAASSACKVMMKTLRLD
RAGRNGPVADKYIYDVMCAKECVLSDSLREKAMLVTGCTCLQLSTQPSEA
VYNSPGDWCTANSGRILCETFDHCGLWNCRISDFMCPRCE
back to top

mRNA from alignment at H-elongata_contig8138:6450..7704-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8138.15800.1 ID=mRNA_H-elongata_contig8138.15800.1|Name=mRNA_H-elongata_contig8138.15800.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1255bp|location=Sequence derived from alignment at H-elongata_contig8138:6450..7704- (Himanthalia elongata Himel1 dioecious)
CCTGAAACCCTCCAGAATAATATCGTGAGATGTTTTGCGCTGGCAGCTGA
TAATGCACACTCAACCCTGACGATAGGTGATCCCCTCGATTTCACCTAAC
CTCGTGTAACGAAGATGTGGATGTTCGGAGGGTTGAATGAGTTCATATTT
AGTACTAAAATAGAAAATAGAAACAATTTGTAGTCGGTAATATTTTAGAG
CTATGTGTATAGCTCGTCTACGTAGTGACGTAAAAAGAAGTATAAACAGC
GAGGTGTCAGACCGGACGAAGTACAGTACTCCAAGTAATTACTCCAAGAA
CAAAATCAGCTTGACGAATTACATATACATGGCTTTGTAGATATAGTACA
TTAAATATAAAGTAGTGCTTGCATAAAAATATATATTGAATGGATGATGT
CTAATAGGGAGAACATTCCGCCAGCTTTAACGCAGCCAGAGAAAACTTGC
AAAGAATGGAAATTCGGAACATCGTGTGACGATATCGGCATAATAAATGG
AAGGCTTCGAGAATTAACTTTGCTCGGGCAATAAGCTGAGGTGCCAATGG
GCCTGTCCCGGCGATATCTGGTGATGTGTTTTGTTCTCCTGATGAGTCGA
ATTGACGTGGTTCATTCAGTGAATCCGACTATGCTTTTGGTCAAGTCCAG
CGATATATCAGCCGTCGATGGAACAGAATGCAATACTACCCTTTACAGTG
GATGGTATGATATACCCTACTCGGGTGGTCTTCTAGACGACTTGAACGAC
TTCTGGCGTTTCTCGGATGCGGAGCTCACAAATGGACATGCTCTAGACGC
CGCATCATCTGCGTGCAAGGTCATGATGAAGACTTTACGCTTGGATCGGG
CCGGAAGAAACGGTCCAGTAGCTGACAAATATATATACGACGTAATGTGC
GCCAAAGAATGCGTATTGAGCGATAGCTTGAGGGAGAAAGCCATGTTGGT
TACGGGGTGCACGTGCCTCCAGCTATCAACGCAGCCTTCGGAGGCGGTGT
ACAATTCGCCTGGAGATTGGTGTACAGCAAACTCTGGGAGGTGTGAACAT
GCATGTTTTTGGTCGAAGTCTTGCATTGAAGGAACTGCTCAGCTAACGCG
GGGAAGAAGGCGATAGCGTCTGAGCATGCAGTCACTATAGTAAGATATAA
TTGATTTTCGTATCGATTATGCCTCGCAGGATACTTTGTGAAACGTTTGA
CCACTGCGGGCTGTGGAACTGCCGCATTAGCGACTTCATGTGCCCAAGGT
GCGAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8138:6450..7704-

>mRNA_H-elongata_contig8138.15800.1 ID=mRNA_H-elongata_contig8138.15800.1|Name=mRNA_H-elongata_contig8138.15800.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig8138:6450..7704- (Himanthalia elongata Himel1 dioecious)
ATGGGCCTGTCCCGGCGATATCTGGTGATGTGTTTTGTTCTCCTGATGAG
TCGAATTGACGTGGTTCATTCAGTGAATCCGACTATGCTTTTGGTCAAGT
CCAGCGATATATCAGCCGTCGATGGAACAGAATGCAATACTACCCTTTAC
AGTGGATGGTATGATATACCCTACTCGGGTGGTCTTCTAGACGACTTGAA
CGACTTCTGGCGTTTCTCGGATGCGGAGCTCACAAATGGACATGCTCTAG
ACGCCGCATCATCTGCGTGCAAGGTCATGATGAAGACTTTACGCTTGGAT
CGGGCCGGAAGAAACGGTCCAGTAGCTGACAAATATATATACGACGTAAT
GTGCGCCAAAGAATGCGTATTGAGCGATAGCTTGAGGGAGAAAGCCATGT
TGGTTACGGGGTGCACGTGCCTCCAGCTATCAACGCAGCCTTCGGAGGCG
GTGTACAATTCGCCTGGAGATTGGTGTACAGCAAACTCTGGGAGATGGGC
CTGTCCCGGCGATATCTGGTGATGTGTTTTGTTCTCCTGATGAGTCGAAT
TGACGTGGTTCATTCAGTGAATCCGACTATGCTTTTGGTCAAGTCCAGCG
ATATATCAGCCGTCGATGGAACAGAATGCAATACTACCCTTTACAGTGGA
TGGTATGATATACCCTACTCGGGTGGTCTTCTAGACGACTTGAACGACTT
CTGGCGTTTCTCGGATGCGGAGCTCACAAATGGACATGCTCTAGACGCCG
CATCATCTGCGTGCAAGGTCATGATGAAGACTTTACGCTTGGATCGGGCC
GGAAGAAACGGTCCAGTAGCTGACAAATATATATACGACGTAATGTGCGC
CAAAGAATGCGTATTGAGCGATAGCTTGAGGGAGAAAGCCATGTTGGTTA
CGGGGTGCACGTGCCTCCAGCTATCAACGCAGCCTTCGGAGGCGGTGTAC
AATTCGCCTGGAGATTGGTGTACAGCAAACTCTGGGAGGATACTTTGTGA
AACGTTTGACCACTGCGGGCTGTGGAACTGCCGCATTAGCGACTTCATGT
GCCCAAGGTGCGAAGATACTTTGTGAAACGTTTGACCACTGCGGGCTGTG
GAACTGCCGCATTAGCGACTTCATGTGCCCAAGGTGCGAA
back to top