mRNA_H-elongata_contig81345.15795.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81345.15795.1
Unique NamemRNA_H-elongata_contig81345.15795.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig81345.15795.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.150e-15
Identity = 36/85 (42.35%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    1 HLSLDPWVDRVSGAKYVGVRIFYITSTWELRTRLLAARLFNPPSSLLSSNHLSEILHDYLKDVLREFDLNVNHLYSATSHSGSGV 255
            H + D W  + S  KY+G+R+F+ TST+ L + L+A +LF P + L SS  LS+IL  ++++VL+EF L+ NHL+   + +GS V
Sbjct:  247 HANFDLWTSKWSNEKYIGLRLFWCTSTFVLDSALVAVKLFQPSADLTSSKQLSDILLIWVQEVLKEFGLDTNHLFCTVTDAGSDV 331
[Close]
BLAST of mRNA_H-elongata_contig81345.15795.1 vs. uniprot
Match: A0A6H5KZ81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ81_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.210e-9
Identity = 30/87 (34.48%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 HLSLDPWVDRVSGAKYVGVRIFYITSTWELRTRLLAA--RLFNPPSSLLSSNHLSEILHDYLKDVLREFDLNVNHLYSATSHSGSGV 255
            H  +D W ++ SG K++GV ++Y+T+++E++  LL    + ++P    LS    SE+L + +K +L E  L+ + L S T+ SGS V
Sbjct:  112 HHMIDIWTEKGSGRKFLGVHLYYVTASFEMKHALLCVGVKRYSPDQGALSEARASEVLLEIVKSILVEVGLSPSDLASGTTDSGSDV 198
[Close]
BLAST of mRNA_H-elongata_contig81345.15795.1 vs. uniprot
Match: G5A2D6_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A2D6_PHYSP)

HSP 1 Score: 56.2 bits (134), Expect = 2.830e-7
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:   13 DPWVDRVSGAKYVGVRIFYITSTWELRTRLLAARLFNPPSSLLSSNHLSEILHDYLKDVLREFDLNVNHLYSATSHSGSGV 255
            D W  +  GAK++G+R+++I   +EL+T LL AR FNP  S  S   +      +L D+L +F L    L+ ATS +G  V
Sbjct:  163 DFWTPKGKGAKFLGLRLYFINKQYELKTILLGARHFNPKYSERSGG-IRAPFRRWLDDILIDFGLTRADLFGATSDAGPDV 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81345.15795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE2.150e-1542.35Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KZ81_9PHAE3.210e-934.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
G5A2D6_PHYSP2.830e-738.27Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81345contigH-elongata_contig81345:831..1331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931220.9115336-CDS-H-elongata_contig81345:830..10331622931220.9115336-CDS-H-elongata_contig81345:830..1033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81345 831..1033 -
1691679747.5380385-CDS-H-elongata_contig81345:830..10331691679747.5380385-CDS-H-elongata_contig81345:830..1033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81345 831..1033 -
1622931220.9468782-CDS-H-elongata_contig81345:1279..13311622931220.9468782-CDS-H-elongata_contig81345:1279..1331Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81345 1280..1331 -
1691679747.5480826-CDS-H-elongata_contig81345:1279..13311691679747.5480826-CDS-H-elongata_contig81345:1279..1331Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81345 1280..1331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81345.15795.1prot_H-elongata_contig81345.15795.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81345 831..1331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81345.15795.1

>prot_H-elongata_contig81345.15795.1 ID=prot_H-elongata_contig81345.15795.1|Name=mRNA_H-elongata_contig81345.15795.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
HLSLDPWVDRVSGAKYVGVRIFYITSTWELRTRLLAARLFNPPSSLLSSN
HLSEILHDYLKDVLREFDLNVNHLYSATSHSGSGV
back to top

mRNA from alignment at H-elongata_contig81345:831..1331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81345.15795.1 ID=mRNA_H-elongata_contig81345.15795.1|Name=mRNA_H-elongata_contig81345.15795.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at H-elongata_contig81345:831..1331- (Himanthalia elongata Himel1 dioecious)
CACCTCAGCCTGGATCCGTGGGTGGACAGGGTTTCGGGCGCGAAGTATGT
GGGTAAGTAGGGTTTGTCACATCTGAGCACCATGCCATGGTTGCGGTATA
TTTCGATATTTTTTGGGTCAACAGACGTTTATTTTTTAATACTATGAACC
GTGCGCAAACGCCCTGTGTGGGTAGTACTGCTTCGCCGTCTGCTAAATTC
AAGAAACTAGATATAGTTTTCCAACAACGTGAGAGGAGCTTCTAAGCCAG
CGGTGGTGTTTTTTTGCCGTGCTCACTAAAAACCCCGTGCCTGTCCAGGT
GTTCGCATTTTTTACATCACCTCTACCTGGGAACTGCGGACCCGCCTACT
CGCCGCTCGCCTGTTCAACCCACCATCGTCCCTGCTCAGCTCGAACCACC
TCTCCGAAATCTTGCACGACTACCTCAAGGATGTCCTGCGCGAGTTCGAC
CTTAACGTGAACCATCTCTACTCGGCAACGAGTCATTCCGGAAGCGGCGT
T
back to top

Coding sequence (CDS) from alignment at H-elongata_contig81345:831..1331-

>mRNA_H-elongata_contig81345.15795.1 ID=mRNA_H-elongata_contig81345.15795.1|Name=mRNA_H-elongata_contig81345.15795.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig81345:831..1331- (Himanthalia elongata Himel1 dioecious)
CACCTCAGCCTGGATCCGTGGGTGGACAGGGTTTCGGGCGCGAAGTATGT
GGCACCTCAGCCTGGATCCGTGGGTGGACAGGGTTTCGGGCGCGAAGTAT
GTGGGTGTTCGCATTTTTTACATCACCTCTACCTGGGAACTGCGGACCCG
CCTACTCGCCGCTCGCCTGTTCAACCCACCATCGTCCCTGCTCAGCTCGA
ACCACCTCTCCGAAATCTTGCACGACTACCTCAAGGATGTCCTGCGCGAG
TTCGACCTTAACGTGAACCATCTCTACTCGGCAACGAGTCATTCCGGAAG
CGGCGTTGTGTTCGCATTTTTTACATCACCTCTACCTGGGAACTGCGGAC
CCGCCTACTCGCCGCTCGCCTGTTCAACCCACCATCGTCCCTGCTCAGCT
CGAACCACCTCTCCGAAATCTTGCACGACTACCTCAAGGATGTCCTGCGC
GAGTTCGACCTTAACGTGAACCATCTCTACTCGGCAACGAGTCATTCCGG
AAGCGGCGTT
back to top