mRNA_H-elongata_contig81342.15794.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81342.15794.1
Unique NamemRNA_H-elongata_contig81342.15794.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81342.15794.1 vs. uniprot
Match: D7G669_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G669_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 9.210e-78
Identity = 160/259 (61.78%), Postives = 176/259 (67.95%), Query Frame = 1 
Query:    1 AQTPDSDFEGFEGEHRPPSSGGARSTADKELALLEHRLSGQVKGATMVVDEFLRVPGAKVFTVTKHKVTYHDVDATPPTGNASPEPETEVETTSAA-----AAPVDENGSIKDAAEALSEEGKEGNAKAEGEKVAAEAPSPAVASKKVRVRAVTELERTVFLTRERILVLACPGGPKSPGLVKSNRHLTELQKMTFMRRDPTLVTLHYFSSPAPGSVAAVGEGGEGGGGATKRNVYRFVPQDKETFIRIIRGALQRFQS 762
            ++ PDSDFEGF+GEH PP +GGAR+ ADKE+ALLEHRLSGQ+KGATMVVDEFL+VPGAKVFTVTKHKVT+HDVDATP                        A+  +E G   D     SE    GNA  E                K+RVRAVTELER VFL+RERILVLACP GP SPGLVKSN HLTELQKMTFMRRDP+LVTLHY    APG     G   +G  GATKRNVYRF   DKE FIRIIRGALQRFQ+
Sbjct: 1195 SENPDSDFEGFDGEHPPPRAGGARTAADKEVALLEHRLSGQIKGATMVVDEFLKVPGAKVFTVTKHKVTFHDVDATPEAXXXXXXXXXXXXXXXXXXXXXKASTAEEKGVAAD-----SEVETSGNADGEXXXXXXXXXXXXXXXXKMRVRAVTELERVVFLSRERILVLACPSGPTSPGLVKSNHHLTELQKMTFMRRDPSLVTLHYL---APG-----GPQEDGSPGATKRNVYRFGLDDKEAFIRIIRGALQRFQA 1440
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BLAST of mRNA_H-elongata_contig81342.15794.1 vs. uniprot
Match: A0A4D9DAX1_9STRA (Rhodanese domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAX1_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.480e-8
Identity = 47/108 (43.52%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:  445 TELERTVFLTRERILVLACPGGPK---SPGLVKSNRHLTELQKMTFMRRDPTLVTLHYFSSPAPGSVAAVGEGGEGGGGATKRNVYRFVPQDKETFIRIIRGALQRFQ 759
            TEL R + LT ERI+VL   G        G VKSN HLTEL +MTFM+R+P +VTL YF +P   +     E G       K   YR     KE FI  ++  LQRF+
Sbjct: 1537 TELARYIVLTPERIIVLEEAGRKARKAGQGRVKSNHHLTELARMTFMKREPDIVTL-YFRNPESQAGTEDTEAGPQKKENLKGRAYRIG--QKEDFIAALQLRLQRFK 1641
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BLAST of mRNA_H-elongata_contig81342.15794.1 vs. uniprot
Match: W7U2B4_9STRA (Tbc1 domain family member 23 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2B4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.140e-7
Identity = 46/107 (42.99%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:  448 ELERTVFLTRERILVLACPGGPK---SPGLVKSNRHLTELQKMTFMRRDPTLVTLHYFSSPAPGSVAAVGEGGEGGGGATKRNVYRFVPQDKETFIRIIRGALQRFQ 759
            EL R + LT ERI+VL   G        G VKSN HLTEL +MTFM+R+P +VTL YF +P   +     E G       K   YR     KE FI  ++  LQRF+
Sbjct: 1104 ELARYIVLTPERIIVLEEAGRKARKAGQGRVKSNHHLTELARMTFMKREPDIVTL-YFRNPECQAGTEDTEAGPQKKENLKGRAYRIG--QKEEFIAALQLRLQRFK 1207
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BLAST of mRNA_H-elongata_contig81342.15794.1 vs. uniprot
Match: A0A7S2CM97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CM97_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.360e-7
Identity = 38/118 (32.20%), Postives = 58/118 (49.15%), Query Frame = 1 
Query:  430 RVRAVTELERTVFLTRERILVLAC--------PGGPKSPGLVKSNRHLTELQKMTFMRRDPTLVTLHYFSSPAPGSVAAVGEGGEGGGGATKRNVYRFVPQDKETFIRIIRGALQRFQ 759
            R+  +  L R + +T++R+LVL          P    S   VKSN HL+EL +MT +++DP +VTLHY   P+   +              +R  YR     K+ FI  ++  LQRF+
Sbjct:  122 RMSEIPSLPRIIIVTKDRLLVLQAIALDDGLPPPLLNSQATVKSNHHLSELSRMTLLKKDPDVVTLHYRDGPSEKDL--------------RRRTYRV--DCKDDFITTLQQCLQRFR 223
[Close]
BLAST of mRNA_H-elongata_contig81342.15794.1 vs. uniprot
Match: A0A7S2CN15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CN15_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.150e-6
Identity = 38/118 (32.20%), Postives = 58/118 (49.15%), Query Frame = 1 
Query:  430 RVRAVTELERTVFLTRERILVLAC--------PGGPKSPGLVKSNRHLTELQKMTFMRRDPTLVTLHYFSSPAPGSVAAVGEGGEGGGGATKRNVYRFVPQDKETFIRIIRGALQRFQ 759
            R+  +  L R + +T++R+LVL          P    S   VKSN HL+EL +MT +++DP +VTLHY   P+   +              +R  YR     K+ FI  ++  LQRF+
Sbjct:  309 RMSEIPSLPRIIIVTKDRLLVLQAIALDDGLPPPLLNSQATVKSNHHLSELSRMTLLKKDPDVVTLHYRDGPSEKDL--------------RRRTYRV--DCKDDFITTLQQCLQRFR 410
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81342.15794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G669_ECTSI9.210e-7861.78Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
A0A4D9DAX1_9STRA1.480e-843.52Rhodanese domain-containing protein n=1 Tax=Nannoc... [more]
W7U2B4_9STRA1.140e-742.99Tbc1 domain family member 23 n=1 Tax=Nannochlorops... [more]
A0A7S2CM97_9STRA4.360e-732.20Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2CN15_9STRA1.150e-632.20Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81342contigH-elongata_contig81342:1347..2601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score267.3
Seed ortholog evalue7.3e-69
Seed eggNOG ortholog2880.D7G669
EggNOG free text desc.embryonic brain development
EggNOG OGsKOG3636@1,KOG3636@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size765
Cds size765
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81342.15794.1prot_H-elongata_contig81342.15794.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81342 1347..2601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931220.8432546-CDS-H-elongata_contig81342:1346..17261622931220.8432546-CDS-H-elongata_contig81342:1346..1726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81342 1347..1726 -
1691679747.5070596-CDS-H-elongata_contig81342:1346..17261691679747.5070596-CDS-H-elongata_contig81342:1346..1726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81342 1347..1726 -
1622931220.8589666-CDS-H-elongata_contig81342:1762..20061622931220.8589666-CDS-H-elongata_contig81342:1762..2006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81342 1763..2006 -
1691679747.5187159-CDS-H-elongata_contig81342:1762..20061691679747.5187159-CDS-H-elongata_contig81342:1762..2006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81342 1763..2006 -
1622931220.8720546-CDS-H-elongata_contig81342:2460..26011622931220.8720546-CDS-H-elongata_contig81342:2460..2601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81342 2461..2601 -
1691679747.5282614-CDS-H-elongata_contig81342:2460..26011691679747.5282614-CDS-H-elongata_contig81342:2460..2601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81342 2461..2601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81342.15794.1

>prot_H-elongata_contig81342.15794.1 ID=prot_H-elongata_contig81342.15794.1|Name=mRNA_H-elongata_contig81342.15794.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp
AQTPDSDFEGFEGEHRPPSSGGARSTADKELALLEHRLSGQVKGATMVVD
EFLRVPGAKVFTVTKHKVTYHDVDATPPTGNASPEPETEVETTSAAAAPV
DENGSIKDAAEALSEEGKEGNAKAEGEKVAAEAPSPAVASKKVRVRAVTE
LERTVFLTRERILVLACPGGPKSPGLVKSNRHLTELQKMTFMRRDPTLVT
LHYFSSPAPGSVAAVGEGGEGGGGATKRNVYRFVPQDKETFIRIIRGALQ
RFQS*
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mRNA from alignment at H-elongata_contig81342:1347..2601-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81342.15794.1 ID=mRNA_H-elongata_contig81342.15794.1|Name=mRNA_H-elongata_contig81342.15794.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1255bp|location=Sequence derived from alignment at H-elongata_contig81342:1347..2601- (Himanthalia elongata Himel1 dioecious)
GCGCAGACCCCGGACAGCGACTTCGAGGGGTTTGAAGGAGAGCACAGGCC
GCCCAGCTCCGGGGGGGCGCGAAGCACCGCGGACAAGGAGTTGGCTCTGC
TGGAGCACAGGCTGAGCGGTCAGGTCAAAGGTGCAACCATGGTGAGTGAA
GAGAAGACTTCGCGCCGCTTGATGGTGTTGGTTTTTTCTGCTCAATTTCC
CCCCCCCTCACCCCCCGTTTCTTAGTCGCATAATTTCGCTTCGTCCATCT
ATATTTTTTTGTGTTTTCTTGATTTGTCGGCGAATTCTGATCGTTGCAAA
GGGTGTGTGTAATGGATGTGCTCGGTGTGATGGGTGTGCTGGGGATGATG
GGTGTGCTGCCGCAGGCCGGATAGGAAGGGAGTGATGCTGATCACTGCTC
TTTAGGCACTCAAGTCGAGCACTCGCTGTAGTGTGTGTTCTACAAAAAGA
CGATGCCCCTCGTATGTGTTTCTATCACTGGCTCGTTGCTGACATCGTGC
ACGCAGTTGCCACTGTCGCCGCTTGTTCTTCATACTACCCCACCTCACCC
CACCCCACCCCACCTCACCACGGAAAACACCTACTTATATTTCAGGTGGT
GGACGAATTCCTCCGTGTCCCCGGGGCCAAGGTGTTCACCGTCACCAAGC
ATAAGGTCACCTATCACGACGTGGATGCCACCCCCCCTACTGGAAACGCC
TCCCCCGAACCGGAAACCGAGGTTGAGACCACCTCGGCCGCGGCCGCACC
GGTGGATGAAAATGGTAGCATTAAAGATGCCGCGGAGGCGTTGTCAGAAG
AGGGGAAAGAGGGGAACGCAAAGGCCGAAGGTGAGAAGGGTTCGGTGGAC
ACCGCAGAAGCAGCAGCGGCCGTAGTGGCGGCCGAAGCGCCGAGTCCCGC
CGTTGCTTCCAAGAAAGTGAGGGTTCGAGCGGTGACCGAGCTTGAGCGCA
CGGTGTTCCTCACCCGCGAACGTATCCTGGTGCTAGCTTGCCCCGGCGGA
CCGAAGAGCCCCGGTCTGGTTAAATCGAATCGGCACCTGACGGAGCTCCA
AAAGATGACCTTCATGAGGCGAGATCCAACGCTGGTCACGCTTCACTACT
TTTCGTCGCCTGCCCCTGGGAGTGTTGCTGCCGTGGGAGAGGGAGGGGAG
GGAGGAGGAGGGGCAACGAAGAGGAACGTCTACCGCTTCGTGCCACAGGA
CAAGGAGACCTTCATTAGGATCATTAGGGGGGCGTTGCAGCGATTCCAGT
CGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig81342:1347..2601-

>mRNA_H-elongata_contig81342.15794.1 ID=mRNA_H-elongata_contig81342.15794.1|Name=mRNA_H-elongata_contig81342.15794.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig81342:1347..2601- (Himanthalia elongata Himel1 dioecious)
GCGCAGACCCCGGACAGCGACTTCGAGGGGTTTGAAGGAGAGCACAGGCC
GCCCAGCTCCGGGGGGGCGCGAAGCACCGCGGACAAGGAGTTGGCTCTGC
TGGAGCACAGGCTGAGCGGTCAGGTCAAAGGTGCAACCATGGCGCAGACC
CCGGACAGCGACTTCGAGGGGTTTGAAGGAGAGCACAGGCCGCCCAGCTC
CGGGGGGGCGCGAAGCACCGCGGACAAGGAGTTGGCTCTGCTGGAGCACA
GGCTGAGCGGTCAGGTCAAAGGTGCAACCATGGTGGTGGACGAATTCCTC
CGTGTCCCCGGGGCCAAGGTGTTCACCGTCACCAAGCATAAGGTCACCTA
TCACGACGTGGATGCCACCCCCCCTACTGGAAACGCCTCCCCCGAACCGG
AAACCGAGGTTGAGACCACCTCGGCCGCGGCCGCACCGGTGGATGAAAAT
GGTAGCATTAAAGATGCCGCGGAGGCGTTGTCAGAAGAGGGGAAAGAGGG
GAACGCAAAGGCCGAAGGTGAGAAGGGTGGTGGACGAATTCCTCCGTGTC
CCCGGGGCCAAGGTGTTCACCGTCACCAAGCATAAGGTCACCTATCACGA
CGTGGATGCCACCCCCCCTACTGGAAACGCCTCCCCCGAACCGGAAACCG
AGGTTGAGACCACCTCGGCCGCGGCCGCACCGGTGGATGAAAATGGTAGC
ATTAAAGATGCCGCGGAGGCGTTGTCAGAAGAGGGGAAAGAGGGGAACGC
AAAGGCCGAAGGTGAGAAGGTGGCGGCCGAAGCGCCGAGTCCCGCCGTTG
CTTCCAAGAAAGTGAGGGTTCGAGCGGTGACCGAGCTTGAGCGCACGGTG
TTCCTCACCCGCGAACGTATCCTGGTGCTAGCTTGCCCCGGCGGACCGAA
GAGCCCCGGTCTGGTTAAATCGAATCGGCACCTGACGGAGCTCCAAAAGA
TGACCTTCATGAGGCGAGATCCAACGCTGGTCACGCTTCACTACTTTTCG
TCGCCTGCCCCTGGGAGTGTTGCTGCCGTGGGAGAGGGAGGGGAGGGAGG
AGGAGGGGCAACGAAGAGGAACGTCTACCGCTTCGTGCCACAGGACAAGG
AGACCTTCATTAGGATCATTAGGGGGGCGTTGCAGCGATTCCAGTCGTGA
TGGCGGCCGAAGCGCCGAGTCCCGCCGTTGCTTCCAAGAAAGTGAGGGTT
CGAGCGGTGACCGAGCTTGAGCGCACGGTGTTCCTCACCCGCGAACGTAT
CCTGGTGCTAGCTTGCCCCGGCGGACCGAAGAGCCCCGGTCTGGTTAAAT
CGAATCGGCACCTGACGGAGCTCCAAAAGATGACCTTCATGAGGCGAGAT
CCAACGCTGGTCACGCTTCACTACTTTTCGTCGCCTGCCCCTGGGAGTGT
TGCTGCCGTGGGAGAGGGAGGGGAGGGAGGAGGAGGGGCAACGAAGAGGA
ACGTCTACCGCTTCGTGCCACAGGACAAGGAGACCTTCATTAGGATCATT
AGGGGGGCGTTGCAGCGATTCCAGTCGTGA
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