mRNA_H-elongata_contig81294.15788.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81294.15788.1
Unique NamemRNA_H-elongata_contig81294.15788.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81294.15788.1 vs. uniprot
Match: A0A6H5KSH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.240e-15
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 2 
Query:  152 DVAARRKAELLKRYGNRTASSEPIAVKREESAREAAGVAAE-DANKSAADEADHNQIWGDYVRYMEHQRKKGWKT 373
            D AA ++A LLKRYG+RT  S PI VK + +  + A  +   D  K+AA E +HN+IWGDYVRYMEHQRKKGWKT
Sbjct:   65 DEAAAKRAALLKRYGDRTPPSGPIPVKVDPAKAKTANPSRGFDVEKAAAGEVNHNEIWGDYVRYMEHQRKKGWKT 139
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BLAST of mRNA_H-elongata_contig81294.15788.1 vs. uniprot
Match: D8LSF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF9_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.240e-15
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 2 
Query:  158 AARRKAELLKRYGNRTASSEPIAVK----REESAREAAGVAAEDANKSAADEADHNQIWGDYVRYMEHQRKKGWKT 373
            AA ++A LLKRYG+RT  S PIAVK    + E+   + G    D  K+AA E +HN+IWGDYVRYMEHQRKKGWKT
Sbjct:   67 AAAKRAALLKRYGDRTPPSGPIAVKVDPAKAETGNSSRGF---DVEKAAAGEVNHNEIWGDYVRYMEHQRKKGWKT 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81294.15788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSH2_9PHAE5.240e-1558.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSF9_ECTSI5.240e-1559.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81294contigH-elongata_contig81294:388..2696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_003530.1
Exons2
Model size1408
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81294.15788.1prot_H-elongata_contig81294.15788.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81294 425..1664 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931220.179906-UTR-H-elongata_contig81294:387..4241622931220.179906-UTR-H-elongata_contig81294:387..424Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81294 388..424 +
1691679747.1594617-UTR-H-elongata_contig81294:387..4241691679747.1594617-UTR-H-elongata_contig81294:387..424Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81294 388..424 +
1622931220.2336762-UTR-H-elongata_contig81294:1664..26961622931220.2336762-UTR-H-elongata_contig81294:1664..2696Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81294 1665..2696 +
1691679747.1957722-UTR-H-elongata_contig81294:1664..26961691679747.1957722-UTR-H-elongata_contig81294:1664..2696Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81294 1665..2696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931220.2012918-CDS-H-elongata_contig81294:424..7161622931220.2012918-CDS-H-elongata_contig81294:424..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81294 425..716 +
1691679747.1710913-CDS-H-elongata_contig81294:424..7161691679747.1710913-CDS-H-elongata_contig81294:424..716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81294 425..716 +
1622931220.219115-CDS-H-elongata_contig81294:1617..16641622931220.219115-CDS-H-elongata_contig81294:1617..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81294 1618..1664 +
1691679747.1854117-CDS-H-elongata_contig81294:1617..16641691679747.1854117-CDS-H-elongata_contig81294:1617..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81294 1618..1664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81294.15788.1

>prot_H-elongata_contig81294.15788.1 ID=prot_H-elongata_contig81294.15788.1|Name=mRNA_H-elongata_contig81294.15788.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MTQRSLATGESDKQGHFDGSPPTPAASEWEATAKGSTDDVAARRKAELLK
RYGNRTASSEPIAVKREESAREAAGVAAEDANKSAADEADHNQIWGDYVR
YMEHQRKKGWKT*
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mRNA from alignment at H-elongata_contig81294:388..2696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81294.15788.1 ID=mRNA_H-elongata_contig81294.15788.1|Name=mRNA_H-elongata_contig81294.15788.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2309bp|location=Sequence derived from alignment at H-elongata_contig81294:388..2696+ (Himanthalia elongata Himel1 dioecious)
CCGAGCTGTGAGAGCACCACGGTCGGTAGTACGATTGATGACTCAGAGGA
GTCTCGCGACGGGCGAGAGCGATAAACAGGGGCACTTTGATGGGAGTCCT
CCGACGCCAGCTGCATCAGAATGGGAAGCCACAGCGAAAGGATCAACCGA
TGACGTCGCCGCCCGGAGAAAAGCTGAGCTGTTGAAGAGATACGGTAACC
GCACCGCGTCTTCGGAGCCAATAGCCGTCAAGAGGGAAGAGTCTGCGAGA
GAGGCAGCCGGAGTTGCGGCGGAAGACGCTAACAAAAGTGCAGCGGACGA
GGCCGACCACAACCAAATCTGGGGAGATTGTGAGTTTTCGCCAAGGGGTA
ACTTGGAGAAACGCACCGCAACCCTAGAATAGCGACACAACCTGTCAGAT
TTGCTTCAGAACATTTACGACCCTCGAAAACCTTGCTACATACCAGTATT
AATAGGCTCTATCTAACTTAGTTCTCTATAGCATTATAGCTCTGCTGATA
TGCGCAGAGTCGCCTCCGCAAATCCCTAGTAATTTCTTGTGTTTATATTT
TTAGGAGGACGTCCAACCCTGACGACCTCGGATAAAACAGTGCACAGCAA
CGCGATCACCGTGAAATCGTTTGCATTATATTTTCTTGAAAATCATCACC
AGATGCTCCAGCTCATTACTATGTCACAGCCTTTCCTAATAATATTACTT
TAGAATATTAGCTCCGCTCATGCGCGCAGAGCTGGGTCTCCAACCTCCAC
TGTGTCTGCTTTGAGGAGGGCGTATGACCCTGGCAGCTAGACTCGTTGGC
CGCGCCCCAGCAATTGTGTACCTAAATGCAGACTGTATGACAAGAATAAC
TTGTACAGTACAAGCATTCACTAGCATTGTACGTAGTGCAACGGGTTGTG
AAAAGGTACAGCAGTGTCTGGTACTAATGTAATTACACGGCGCCAAGAAC
TTTTCTATCCACCTAACGAAGCTAGGTTACTCAAACTCTCCACGTCAGCT
CCTGTGTAAACTTCAAGGGTGTTGTTGTGCCCCCTGAACCCAGGATATCC
GCCTGGTCTCTTTCGTACAGAAATGTTTTCACAGCTGGTAGACAGACTAC
AGCTTGTGCGAACGGTAACCAACGTCGTGCGATGGCCGCTACCCGCCTCT
CTCTCTCTCTCTCTTGCGTATCGTCGCCCCCGCCGTGGGTGCAAATGCCC
CTTTCTCACGCCTTTCTCTGTCTGTTTCAGATGTGCGCTACATGGAGCAC
CAACGAAAGAAGGGGTGGAAGACTTGAAGTTTTTTTCTTCTTTTTTTCCC
CCAACGTACACGTGTAGAATCAAGCTCGTACACGCGCGTCTGCTTGCGCC
ACCGCTGGTTTTAGGAAAACCGACCACTGTACGGACACCCAGGGTCGAAC
AACGACCCAGCAGCAGCAGCAGCAGACGCGATGTAAGAGACTGTATAGTA
TAATAGTGGGCATCGCTGGGGGCGAAAGAAAAAACGTGCAAAACCAGCAC
GGACATTACACTAGAAGTAGTAGTCGTTGGATGGGAAAAGGAGACTGACT
ACCTTAAACGTTTTTTCCTTCCGGATAGTGATTTTTCTACCTTGTGACCA
CGGGCTGGATTTTGACATCAGCTTACGTGACGATTCAATTAATATAAGTG
CAGTAAATGGAGGGACGGACGGATGTATGACAAGAGAGTTTTTTTGCTCG
AGTTCGGCAAATTTTTACAACGTTTTACTCATTGCGCAAGGTATTAGCCA
AGGAATCAAGAACATCCTCGTGTCGACTGATCAGTGATTCGGTCTCGGGT
ATCCATATTCAAGATCACAATCAATATATCTTGGGTTTAACCTATTATTA
TGAAAGAAACCTTGAAGTCATTCCAACCCTCGGAACATCCACACCTTCTT
TTAGCACTATGAGAGGTGTAATCCAGGGGACCAACTATCGTCAGGTTCGA
ATGTGGACATTTTAAGTACAAAATCGTCCTATGTGATTATTCATCATCAT
AATATGGGGACGCCAGACCAGAGTATAGGGAGTGAACTGTGTGTGGTGGT
TAGGAAGGGTTCGGCGTAGCATTATCCATATGTAGAGAGTTACGATCATG
CATTTTGATTGATTTCAGGTTGTAAGGGTATACTTATTTATCGTATGGGG
ACGTAAAGCCGAAGCCTAGAGGGTGGACTGTGGTGATTAGGAAGGGTGAA
TTATTTTCATCACTTCATTACATCATATACTAGTATAGTCTGAGTATCGG
ACTAGAATAATATGTTGAATCTACGGTGCTTAATTGTACTTATTATAAGC
TAGACAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig81294:388..2696+

>mRNA_H-elongata_contig81294.15788.1 ID=mRNA_H-elongata_contig81294.15788.1|Name=mRNA_H-elongata_contig81294.15788.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig81294:388..2696+ (Himanthalia elongata Himel1 dioecious)
ATGACTCAGAGGAGTCTCGCGACGGGCGAGAGCGATAAACAGGGGCACTT
TGATGGGAGTCCTCCGACGCCAGCTGCATCAGAATGGGAAGCCACAGCGA
AAGGATCAACCGATGACGTCGCCGCCCGGAGAAAAGCTGAGCTGTTGAAG
AGATACGGTAACCGCACCGCGTCTTCGGAGCCAATAGCCGTCAAGAGGGA
AGAGTCTGCGAGAGAGGCAGCCGGAGTTGCGGCGGAAGACGCTAACAAAA
GTGCAGCGGACGAGGCCGACCACAACCAAATCTGGGGAGATTATGACTCA
GAGGAGTCTCGCGACGGGCGAGAGCGATAAACAGGGGCACTTTGATGGGA
GTCCTCCGACGCCAGCTGCATCAGAATGGGAAGCCACAGCGAAAGGATCA
ACCGATGACGTCGCCGCCCGGAGAAAAGCTGAGCTGTTGAAGAGATACGG
TAACCGCACCGCGTCTTCGGAGCCAATAGCCGTCAAGAGGGAAGAGTCTG
CGAGAGAGGCAGCCGGAGTTGCGGCGGAAGACGCTAACAAAAGTGCAGCG
GACGAGGCCGACCACAACCAAATCTGGGGAGATTATGTGCGCTACATGGA
GCACCAACGAAAGAAGGGGTGGAAGACTTGAATGTGCGCTACATGGAGCA
CCAACGAAAGAAGGGGTGGAAGACTTGA
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