mRNA_H-elongata_contig81266.15786.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81266.15786.1
Unique NamemRNA_H-elongata_contig81266.15786.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig81266.15786.1 vs. uniprot
Match: D8LPR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR7_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.300e-40
Identity = 62/83 (74.70%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:  190 MGIDTLDLVVVPWPSETQGNRVSSDRGERQRDGELFLKTWRALQKLVDAGTICSLGVDRFVPWQLDFIVSQPAQRPTVNFLDV 438
            MG+D+LDL+VVPWPS TQG+R  SDRGERQRDG+LFLKTW+ALQ+LVDAGT+ +LGVDRF PWQLDF+++QP  RP VNFL V
Sbjct:    1 MGLDSLDLLVVPWPSGTQGHRALSDRGERQRDGDLFLKTWKALQRLVDAGTVRALGVDRFFPWQLDFVIAQPGPRPAVNFLHV 83
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BLAST of mRNA_H-elongata_contig81266.15786.1 vs. uniprot
Match: F0Y343_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y343_AURAN)

HSP 1 Score: 68.2 bits (165), Expect = 1.330e-10
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:  136 CHRSAKATVQRVSSFMVAMGIDTLDLVVVPWPSETQ--GNRVSSDRGERQRDGELFLKTWRALQKLVDAGTICSLGVDRFVPWQLDFIVSQ--PAQRPTVN 426
            CHR++ A V +    +  +G+  LD + VPWP+     GN       + +R   LFL+TW+ LQ LV+AG++  LG +    WQL+ ++    P QRP  N
Sbjct:  104 CHRTSDACVVQTRRILDGLGVAKLDGLCVPWPAALGDGGNDPYHVSADVKRQKRLFLRTWKNLQPLVEAGSVRWLGTEMLETWQLERLIEAVAPEQRPAFN 204
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BLAST of mRNA_H-elongata_contig81266.15786.1 vs. uniprot
Match: UPI001BFF8668 (aldo/keto reductase n=1 Tax=Microbacterium flavum TaxID=415216 RepID=UPI001BFF8668)

HSP 1 Score: 60.5 bits (145), Expect = 4.590e-8
Identity = 32/95 (33.68%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:  154 ATVQRVSSFMVAMGIDTLDLVVVPWPSETQGNRVSSDRGERQRDGELFLKTWRALQKLVDAGTICSLGVDRFVPWQLDFIVSQPAQRPTVNFLDV 438
            AT++   + + A+G+D LDL ++ WP+                D EL++ TWRAL+KL   G + ++GV  F P  LD I+   A  P VN +++
Sbjct:   89 ATLRAYDASLAALGLDHLDLYLIHWPTP---------------DRELYVDTWRALEKLAADGRVRAIGVSNFEPAHLDRIIDASAVVPAVNQVEL 168
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BLAST of mRNA_H-elongata_contig81266.15786.1 vs. uniprot
Match: A0A3L7ITJ7_9MICO (Aldo/keto reductase n=1 Tax=Mycetocola zhadangensis TaxID=1164595 RepID=A0A3L7ITJ7_9MICO)

HSP 1 Score: 55.5 bits (132), Expect = 2.800e-6
Identity = 28/95 (29.47%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:  154 ATVQRVSSFMVAMGIDTLDLVVVPWPSETQGNRVSSDRGERQRDGELFLKTWRALQKLVDAGTICSLGVDRFVPWQLDFIVSQPAQRPTVNFLDV 438
            +T++   + M  +G+D LDL ++ WP+  Q               +L++ TWRAL++L   G + S+GV  F P  L+ +V++    P VN +++
Sbjct:   88 STLRAFDTSMDLLGLDYLDLYLIHWPAPAQ---------------DLYVDTWRALERLQSEGRVRSIGVSNFHPHHLERLVNETETVPVVNQIEL 167
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BLAST of mRNA_H-elongata_contig81266.15786.1 vs. uniprot
Match: C3Y7N0_BRAFL (Aldo_ket_red domain-containing protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Y7N0_BRAFL)

HSP 1 Score: 54.7 bits (130), Expect = 5.710e-6
Identity = 27/82 (32.93%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:  190 MGIDTLDLVVVPWP-SETQGNRVS--SDRGERQRDGELFLKTWRALQKLVDAGTICSLGVDRFVPWQLDFIVSQPAQRPTVN 426
            +G+D LDL ++ WP +  +G+ +    + G+R      +L TW+A++KLVDAG + ++G+  F   Q++ I++    +P VN
Sbjct:  100 LGLDYLDLYLMHWPYASKRGDNLHPVDENGQRAYGDTHYLDTWKAMEKLVDAGLVKAIGLSNFNISQMEEILTNGRIKPAVN 181
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BLAST of mRNA_H-elongata_contig81266.15786.1 vs. uniprot
Match: A0A852YJG6_9MICO (2,5-diketo-D-gluconate reductase A n=4 Tax=Schumannella TaxID=472058 RepID=A0A852YJG6_9MICO)

HSP 1 Score: 54.3 bits (129), Expect = 7.160e-6
Identity = 24/95 (25.26%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:  154 ATVQRVSSFMVAMGIDTLDLVVVPWPSETQGNRVSSDRGERQRDGELFLKTWRALQKLVDAGTICSLGVDRFVPWQLDFIVSQPAQRPTVNFLDV 438
            AT++     +  + +  +DL ++ WP   Q               +L++ TWRALQ+L D G + S+GV  F P  ++ ++++  ++P +N +++
Sbjct:   85 ATLRAAERSLAELDLGYIDLYLIHWPCPAQ---------------DLYVDTWRALQRLRDEGVVKSIGVSNFHPHHIERLIAETGEKPVINQVEL 164
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BLAST of mRNA_H-elongata_contig81266.15786.1 vs. uniprot
Match: A0A4P9ZRS9_9FUNG (Aldose reductase n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZRS9_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 7.870e-6
Identity = 30/86 (34.88%), Postives = 47/86 (54.65%), Query Frame = 1 
Query:  190 MGIDTLDLVVVPWPS---ETQGNRVSSDRGERQRD-GELFLKTWRALQKLVDAGTICSLGVDRFVPWQLDFIVSQPAQRPTVNFLD 435
            +G D LDL ++ WP      +G +     G  + D G   L+TWRA++KLVDAG + ++GV  F   QL  ++     +P VN ++
Sbjct:   98 LGCDYLDLYLMHWPLAFVHGEGLKPFGPDGHMKMDTGVTILETWRAMEKLVDAGLVRNIGVSNFTITQLTDLLQNARIKPAVNQIE 183
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BLAST of mRNA_H-elongata_contig81266.15786.1 vs. uniprot
Match: UPI0012EA5953 (aldo/keto reductase n=1 Tax=Microbacterium karelineae TaxID=2654283 RepID=UPI0012EA5953)

HSP 1 Score: 53.9 bits (128), Expect = 9.810e-6
Identity = 26/94 (27.66%), Postives = 49/94 (52.13%), Query Frame = 1 
Query:  157 TVQRVSSFMVAMGIDTLDLVVVPWPSETQGNRVSSDRGERQRDGELFLKTWRALQKLVDAGTICSLGVDRFVPWQLDFIVSQPAQRPTVNFLDV 438
            T++   + +  +G+D LDL ++ WP+  +               +L++ TWRAL+KL   G + ++GV  F P  LD ++   +  P VN +++
Sbjct:   87 TLRAYDTTLTKLGVDALDLYLIHWPTPRR---------------DLYIDTWRALEKLYADGRVRAIGVSNFEPEHLDRLIDSSSVVPVVNQVEL 165
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BLAST of mRNA_H-elongata_contig81266.15786.1 vs. uniprot
Match: UPI001FADE62D (aldo/keto reductase n=1 Tax=Microbacterium sp. CIAB417 TaxID=2860287 RepID=UPI001FADE62D)

HSP 1 Score: 53.9 bits (128), Expect = 9.930e-6
Identity = 28/95 (29.47%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:  154 ATVQRVSSFMVAMGIDTLDLVVVPWPSETQGNRVSSDRGERQRDGELFLKTWRALQKLVDAGTICSLGVDRFVPWQLDFIVSQPAQRPTVNFLDV 438
            AT++   + +  +G+D LDL +V WP+                D +L++ TWRAL+KL   G + ++GV  F P  L+ ++   +  P VN +++
Sbjct:   89 ATLRAYDTTLAKLGLDQLDLYLVHWPTP---------------DRDLYVDTWRALEKLYADGRVRAIGVSNFEPAHLERLIEAGSVVPAVNQVEL 168
[Close]
BLAST of mRNA_H-elongata_contig81266.15786.1 vs. uniprot
Match: A0A3N4ZAA8_9MICO (Diketogulonate reductase-like aldo/keto reductase n=1 Tax=Georgenia muralis TaxID=154117 RepID=A0A3N4ZAA8_9MICO)

HSP 1 Score: 53.9 bits (128), Expect = 1.000e-5
Identity = 27/95 (28.42%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:  154 ATVQRVSSFMVAMGIDTLDLVVVPWPSETQGNRVSSDRGERQRDGELFLKTWRALQKLVDAGTICSLGVDRFVPWQLDFIVSQPAQRPTVNFLDV 438
            +T++   +   A+G+D +DL ++ WP               + D +L+++TWRAL+KL   G + ++GV  F+P  L+ +V++    P VN +++
Sbjct:   89 STLKAFDASRRALGLDVVDLYLIHWP---------------RPDLDLYVETWRALEKLYAEGAVRAIGVSNFLPEHLERLVAESDVVPAVNQVEL 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81266.15786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LPR7_ECTSI1.300e-4074.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0Y343_AURAN1.330e-1035.64Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
UPI001BFF86684.590e-833.68aldo/keto reductase n=1 Tax=Microbacterium flavum ... [more]
A0A3L7ITJ7_9MICO2.800e-629.47Aldo/keto reductase n=1 Tax=Mycetocola zhadangensi... [more]
C3Y7N0_BRAFL5.710e-632.93Aldo_ket_red domain-containing protein n=2 Tax=Bra... [more]
A0A852YJG6_9MICO7.160e-625.262,5-diketo-D-gluconate reductase A n=4 Tax=Schuman... [more]
A0A4P9ZRS9_9FUNG7.870e-634.88Aldose reductase n=1 Tax=Dimargaris cristalligena ... [more]
UPI0012EA59539.810e-627.66aldo/keto reductase n=1 Tax=Microbacterium karelin... [more]
UPI001FADE62D9.930e-629.47aldo/keto reductase n=1 Tax=Microbacterium sp. CIA... [more]
A0A3N4ZAA8_9MICO1.000e-528.42Diketogulonate reductase-like aldo/keto reductase ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81266contigH-elongata_contig81266:1237..2657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue3.4e-31
Seed eggNOG ortholog2880.D8LPR7
EggNOG OGs2EV49@1,2SX5Z@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADP-dependent oxidoreductase domain
Ec32 orthologEc-18_002210.1
Exons3
Model size438
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81266.15786.1prot_H-elongata_contig81266.15786.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81266 1237..2657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931219.729686-CDS-H-elongata_contig81266:1236..14231622931219.729686-CDS-H-elongata_contig81266:1236..1423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81266 1237..1423 +
1691679746.965799-CDS-H-elongata_contig81266:1236..14231691679746.965799-CDS-H-elongata_contig81266:1236..1423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81266 1237..1423 +
1622931219.7506514-CDS-H-elongata_contig81266:1766..19341622931219.7506514-CDS-H-elongata_contig81266:1766..1934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81266 1767..1934 +
1691679746.9835932-CDS-H-elongata_contig81266:1766..19341691679746.9835932-CDS-H-elongata_contig81266:1766..1934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81266 1767..1934 +
1622931219.7707293-CDS-H-elongata_contig81266:2574..26571622931219.7707293-CDS-H-elongata_contig81266:2574..2657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81266 2575..2657 +
1691679746.994519-CDS-H-elongata_contig81266:2574..26571691679746.994519-CDS-H-elongata_contig81266:2574..2657Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81266 2575..2657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81266.15786.1

>prot_H-elongata_contig81266.15786.1 ID=prot_H-elongata_contig81266.15786.1|Name=mRNA_H-elongata_contig81266.15786.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
QRCKCFFFDACVEKYLASHFKTLLARPNRSRAGVFVGLTFPADFPCHRSA
KATVQRVSSFMVAMGIDTLDLVVVPWPSETQGNRVSSDRGERQRDGELFL
KTWRALQKLVDAGTICSLGVDRFVPWQLDFIVSQPAQRPTVNFLDV
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mRNA from alignment at H-elongata_contig81266:1237..2657+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81266.15786.1 ID=mRNA_H-elongata_contig81266.15786.1|Name=mRNA_H-elongata_contig81266.15786.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1421bp|location=Sequence derived from alignment at H-elongata_contig81266:1237..2657+ (Himanthalia elongata Himel1 dioecious)
CAGAGATGCAAGTGTTTTTTTTTTGACGCCTGCGTCGAGAAATATTTGGC
GTCCCATTTCAAGACGCTGCTTGCGAGGCCGAACCGCAGTAGGGCCGGGG
TATTTGTCGGGTTAACATTTCCCGCGGACTTCCCCTGCCATCGCTCTGCA
AAGGCTACAGTCCAGAGAGTTTCCAGCTTTATGGTCGGTGGGTGAGGTGA
AAAAACAAGTAAAGCAATACTGTATTGAATGTGGAAATACTGGGCTGGGT
TATAATAACTGACGATTGCCCCCGGAGCTCTACATGGCAATAACTTCGTT
GCAGTTGGGGTTCGATGCATTTGAAAAATATTTTTCGGGGTCGATCCACC
GTGCTTGTGCAACACCCTTCATAGGTCATAGGTACTTCCGACCGGAGGTA
CAACCACCATCCCGCCACCCATTTCCCCCAGGAGACGTCCTCACGCGTAG
CGACCGAGAAACAACCTAACTTCAGAACCTTCTTGTTTTCGAATATTTGG
CTCACGGCCCACGACACACGCGCGCTAAAGCGATGGGAATAGATACCCTC
GATCTGGTGGTCGTGCCTTGGCCATCGGAAACACAGGGTAACCGAGTATC
CTCAGACAGAGGAGAGCGTCAGCGGGATGGAGAATTATTTCTGAAGACCT
GGCGGGCTTTGCAGAAGCTCGTTGACGCTGGAACGATCTGCTCACTAGGT
GCGAGTGATTTATCAGTATACAGGGAGAGCTATAGAAAACTCAATGATAC
AATATGTCCTTTCCTTGGTATTATTAGCATGCTACTATGTATTTTGGGGT
AAAGAATCGTCCAGATTGTGGGTGCTTGAGCACGTCTAACATTATATTGG
CGAAATGGAGACTCGATTACGAAAATGACACTGAGTATGTTTTTGGCGAT
TTTGGAACCTTGTGGAGTAGAAGAATGGTCACAATATATCTTTCTATTCT
TCAAACATAATACAATACTGAGCAACAATAGTGAATATCGTTTCGCCTGC
CCCCCAAAAGGCCTAGTGAGCATCCCACAAGGGTTGTGGGGAGATGGTGG
CTGAAGGCAGTTGTACGATAAGCAGAATGGCGGCATTCTTGGGATGAAAG
AGAGATGCCGCTAAGCTACTGATAGAAAATTCTTGCGAGGGGGGTGATCA
TGCAGACGCTCGGGGTTATCAGACATGTCAGAATCCTGAAAAATTATGGG
GTTCGATGACGGAGACTCTTGAGGTTCTTAGGCGTGTCAATAGCCTGAAA
ACATATAGGGGCTCGATCATGCTGACGGTCGGGGTTCTTAAACATGCCAA
GAGTGTTCACTCATGAGCGGCGATCATTGCCAATCCAGGTGTGGATCGTT
TCGTACCTTGGCAGCTGGACTTCATCGTATCGCAACCGGCACAAAGGCCG
ACCGTCAATTTTCTAGATGTC
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Coding sequence (CDS) from alignment at H-elongata_contig81266:1237..2657+

>mRNA_H-elongata_contig81266.15786.1 ID=mRNA_H-elongata_contig81266.15786.1|Name=mRNA_H-elongata_contig81266.15786.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig81266:1237..2657+ (Himanthalia elongata Himel1 dioecious)
CAGAGATGCAAGTGTTTTTTTTTTGACGCCTGCGTCGAGAAATATTTGGC
GTCCCATTTCAAGACGCTGCTTGCGAGGCCGAACCGCAGTAGGGCCGGGG
TATTTGTCGGGTTAACATTTCCCGCGGACTTCCCCTGCCATCGCTCTGCA
AAGGCTACAGTCCAGAGAGTTTCCAGCTTTATGGTCGCAGAGATGCAAGT
GTTTTTTTTTTGACGCCTGCGTCGAGAAATATTTGGCGTCCCATTTCAAG
ACGCTGCTTGCGAGGCCGAACCGCAGTAGGGCCGGGGTATTTGTCGGGTT
AACATTTCCCGCGGACTTCCCCTGCCATCGCTCTGCAAAGGCTACAGTCC
AGAGAGTTTCCAGCTTTATGGTCGCGATGGGAATAGATACCCTCGATCTG
GTGGTCGTGCCTTGGCCATCGGAAACACAGGGTAACCGAGTATCCTCAGA
CAGAGGAGAGCGTCAGCGGGATGGAGAATTATTTCTGAAGACCTGGCGGG
CTTTGCAGAAGCTCGTTGACGCTGGAACGATCTGCTCACTAGCGATGGGA
ATAGATACCCTCGATCTGGTGGTCGTGCCTTGGCCATCGGAAACACAGGG
TAACCGAGTATCCTCAGACAGAGGAGAGCGTCAGCGGGATGGAGAATTAT
TTCTGAAGACCTGGCGGGCTTTGCAGAAGCTCGTTGACGCTGGAACGATC
TGCTCACTAGGTGTGGATCGTTTCGTACCTTGGCAGCTGGACTTCATCGT
ATCGCAACCGGCACAAAGGCCGACCGTCAATTTTCTAGATGTCGTGTGGA
TCGTTTCGTACCTTGGCAGCTGGACTTCATCGTATCGCAACCGGCACAAA
GGCCGACCGTCAATTTTCTAGATGTC
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