mRNA_H-elongata_contig81212.15779.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81212.15779.1
Unique NamemRNA_H-elongata_contig81212.15779.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81212.15779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81212contigH-elongata_contig81212:1263..2380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1096
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81212.15779.1prot_H-elongata_contig81212.15779.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81212 1605..2361 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931218.9608347-UTR-H-elongata_contig81212:1262..16041622931218.9608347-UTR-H-elongata_contig81212:1262..1604Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81212 1263..1604 +
1691679746.5663288-UTR-H-elongata_contig81212:1262..16041691679746.5663288-UTR-H-elongata_contig81212:1262..1604Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81212 1263..1604 +
1622931219.0149353-UTR-H-elongata_contig81212:2361..23801622931219.0149353-UTR-H-elongata_contig81212:2361..2380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81212 2362..2380 +
1691679746.5942187-UTR-H-elongata_contig81212:2361..23801691679746.5942187-UTR-H-elongata_contig81212:2361..2380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig81212 2362..2380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931218.977649-CDS-H-elongata_contig81212:1604..23051622931218.977649-CDS-H-elongata_contig81212:1604..2305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81212 1605..2305 +
1691679746.5773594-CDS-H-elongata_contig81212:1604..23051691679746.5773594-CDS-H-elongata_contig81212:1604..2305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81212 1605..2305 +
1622931218.9979546-CDS-H-elongata_contig81212:2327..23611622931218.9979546-CDS-H-elongata_contig81212:2327..2361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81212 2328..2361 +
1691679746.5851426-CDS-H-elongata_contig81212:2327..23611691679746.5851426-CDS-H-elongata_contig81212:2327..2361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81212 2328..2361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81212.15779.1

>prot_H-elongata_contig81212.15779.1 ID=prot_H-elongata_contig81212.15779.1|Name=mRNA_H-elongata_contig81212.15779.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=245bp
MCCADKARQGKCYCIERGDRGVGGWISRRQDWCVANVRDISTGVPKVSTS
GSAVASVSASRQLPSRVKSVFASTPTPPSPPQQQHHNRLQCKQTLVRATG
LPGSRNSTNRIIDRAPRSVKREAAVLESSTRCLVDPTGLHQSRKFTSPAA
GGGVKRTRGDDGDGGGCTYGGKRYEATAEMDAGVGVGPRSHAKRRRGVAA
GQNREQGCVSLVYSPVAATTAKIPPPRGRVPSKKLLVATTLETH*
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mRNA from alignment at H-elongata_contig81212:1263..2380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81212.15779.1 ID=mRNA_H-elongata_contig81212.15779.1|Name=mRNA_H-elongata_contig81212.15779.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1118bp|location=Sequence derived from alignment at H-elongata_contig81212:1263..2380+ (Himanthalia elongata Himel1 dioecious)
GTGACTGGGGCAGCATCGGCGGCGGCCGTAGAAGTGCCTACATGGTCGAC
TGCGTTGTCTAGCGATGCGATTCGGCGCTCTGAAGGCCTCGAAAAACTCC
CCCCGAGGGCGGCCGTTACCTTACGGTCACCCAGATATAATCGCAAGCGC
CGGAGACAGATTGCTGACGATCTCAATGATCCTATATTTCGAGCCAAGGC
GAAAGCCAAGGCGAAAAGAGAAGAGGCCGAGAAAGCTGCAGACAAAAAGA
GTCGGACCTGCTCGGGTTTGGCCGAAGTCGGATGTGGGAGCAAAACGCGC
GGCAGCTCCGGGGTATCTAGAGATCCCGAATCCGGCGAAAAAATGTGCTG
CGCCGATAAGGCTAGGCAAGGGAAATGTTACTGCATCGAGAGAGGCGACC
GCGGGGTTGGCGGGTGGATCTCTCGTCGGCAAGACTGGTGCGTGGCCAAT
GTCCGCGATATCTCGACCGGCGTTCCAAAGGTATCGACTTCGGGCTCAGC
TGTGGCGTCTGTATCAGCTTCCAGACAACTACCATCCCGCGTAAAGTCTG
TCTTCGCTTCTACTCCAACGCCACCGTCGCCACCGCAGCAGCAGCACCAC
AACCGACTCCAGTGCAAACAGACCCTTGTCCGCGCCACTGGGCTCCCCGG
AAGCCGCAACTCGACCAACCGTATAATTGACAGGGCGCCTCGTAGCGTGA
AGAGAGAGGCGGCGGTGCTAGAGTCGTCTACGCGCTGTCTCGTTGATCCC
ACGGGATTGCACCAGAGCAGAAAGTTTACGTCCCCAGCCGCGGGTGGGGG
GGTCAAGAGGACGAGGGGTGACGACGGTGACGGAGGAGGCTGCACATATG
GTGGTAAAAGGTACGAAGCAACGGCGGAAATGGATGCGGGCGTTGGAGTG
GGTCCGCGATCGCACGCAAAGAGACGTCGAGGCGTCGCAGCAGGGCAAAA
CAGGGAACAGGGTTGCGTGTCACTGGTGTACTCGCCGGTGGCGGCAACCA
CGGCGAAGATTCCGCCGCCACGCGGGCGGGTTCCTTCGAAAAAGGGATCC
TCGAAAAAAGCGAAGGCTTCTGGTAGCAACGACTCTGGAAACACACTGAC
GAAGAAACAGCACTGTCT
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Coding sequence (CDS) from alignment at H-elongata_contig81212:1263..2380+

>mRNA_H-elongata_contig81212.15779.1 ID=mRNA_H-elongata_contig81212.15779.1|Name=mRNA_H-elongata_contig81212.15779.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1470bp|location=Sequence derived from alignment at H-elongata_contig81212:1263..2380+ (Himanthalia elongata Himel1 dioecious)
ATGTGCTGCGCCGATAAGGCTAGGCAAGGGAAATGTTACTGCATCGAGAG
AGGCGACCGCGGGGTTGGCGGGTGGATCTCTCGTCGGCAAGACTGGTGCG
TGGCCAATGTCCGCGATATCTCGACCGGCGTTCCAAAGGTATCGACTTCG
GGCTCAGCTGTGGCGTCTGTATCAGCTTCCAGACAACTACCATCCCGCGT
AAAGTCTGTCTTCGCTTCTACTCCAACGCCACCGTCGCCACCGCAGCAGC
AGCACCACAACCGACTCCAGTGCAAACAGACCCTTGTCCGCGCCACTGGG
CTCCCCGGAAGCCGCAACTCGACCAACCGTATAATTGACAGGGCGCCTCG
TAGCGTGAAGAGAGAGGCGGCGGTGCTAGAGTCGTCTACGCGCTGTCTCG
TTGATCCCACGGGATTGCACCAGAGCAGAAAGTTTACGTCCCCAGCCGCG
GGTGGGGGGGTCAAGAGGACGAGGGGTGACGACGGTGACGGAGGAGGCTG
CACATATGGTGGTAAAAGGTACGAAGCAACGGCGGAAATGGATGCGGGCG
TTGGAGTGGGTCCGCGATCGCACGCAAAGAGACGTCGAGGCGTCGCAGCA
GGGCAAAACAGGGAACAGGGTTGCGTGTCACTGGTGTACTCGCCGGTGGC
GGCAACCACGGCGAAGATTCCGCCGCCACGCGGGCGGGTTCCTTCGAAAA
AATGTGCTGCGCCGATAAGGCTAGGCAAGGGAAATGTTACTGCATCGAGA
GAGGCGACCGCGGGGTTGGCGGGTGGATCTCTCGTCGGCAAGACTGGTGC
GTGGCCAATGTCCGCGATATCTCGACCGGCGTTCCAAAGGTATCGACTTC
GGGCTCAGCTGTGGCGTCTGTATCAGCTTCCAGACAACTACCATCCCGCG
TAAAGTCTGTCTTCGCTTCTACTCCAACGCCACCGTCGCCACCGCAGCAG
CAGCACCACAACCGACTCCAGTGCAAACAGACCCTTGTCCGCGCCACTGG
GCTCCCCGGAAGCCGCAACTCGACCAACCGTATAATTGACAGGGCGCCTC
GTAGCGTGAAGAGAGAGGCGGCGGTGCTAGAGTCGTCTACGCGCTGTCTC
GTTGATCCCACGGGATTGCACCAGAGCAGAAAGTTTACGTCCCCAGCCGC
GGGTGGGGGGGTCAAGAGGACGAGGGGTGACGACGGTGACGGAGGAGGCT
GCACATATGGTGGTAAAAGGTACGAAGCAACGGCGGAAATGGATGCGGGC
GTTGGAGTGGGTCCGCGATCGCACGCAAAGAGACGTCGAGGCGTCGCAGC
AGGGCAAAACAGGGAACAGGGTTGCGTGTCACTGGTGTACTCGCCGGTGG
CGGCAACCACGGCGAAGATTCCGCCGCCACGCGGGCGGGTTCCTTCGAAA
AAGCTTCTGGTAGCAACGACTCTGGAAACACACTGAGCTTCTGGTAGCAA
CGACTCTGGAAACACACTGA
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