mRNA_H-elongata_contig81212.15778.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81212.15778.1
Unique NamemRNA_H-elongata_contig81212.15778.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81212.15778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81212contigH-elongata_contig81212:179..1192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size485
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931218.8946018-CDS-H-elongata_contig81212:178..2901622931218.8946018-CDS-H-elongata_contig81212:178..290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81212 179..290 +
1691679746.5453107-CDS-H-elongata_contig81212:178..2901691679746.5453107-CDS-H-elongata_contig81212:178..290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81212 179..290 +
1622931218.9154181-CDS-H-elongata_contig81212:819..11901622931218.9154181-CDS-H-elongata_contig81212:819..1190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81212 820..1190 +
1691679746.5555496-CDS-H-elongata_contig81212:819..11901691679746.5555496-CDS-H-elongata_contig81212:819..1190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81212 820..1190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81212.15778.1prot_H-elongata_contig81212.15778.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81212 179..1190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81212.15778.1

>prot_H-elongata_contig81212.15778.1 ID=prot_H-elongata_contig81212.15778.1|Name=mRNA_H-elongata_contig81212.15778.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
TFRYDPKPGANSITESFSPGVDETTCSGNNGMVSNHTGLAKGRDASLLIL
GSPTPKTRRGDLGAPVKEEEQPSCPVLCKTPTDHGEPRAVPSRSDRPLAL
CPSDDGREFCATGDAPAGGAVEAEVDEGVIPGKRPMAPATSISRSSLPCP
RPKRAVTFSPS
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mRNA from alignment at H-elongata_contig81212:179..1192+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81212.15778.1 ID=mRNA_H-elongata_contig81212.15778.1|Name=mRNA_H-elongata_contig81212.15778.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1014bp|location=Sequence derived from alignment at H-elongata_contig81212:179..1192+ (Himanthalia elongata Himel1 dioecious)
ACGTTCCGCTACGATCCGAAGCCTGGCGCCAATAGCATCACCGAGTCGTT
TTCTCCGGGCGTCGATGAGACCACCTGCAGTGGCAACAATGGTATGGTCT
CCAACCATACAGGTGAAGGACGCTACTTGCGCGGTGCGAGAGAGAGAGAC
CATTGGCAAATGTTGAGCATCTCGTGCTTCGGGCGGGTTTGTCCCGCTCG
CGCTTTGGTTTCGCAACGGCATGACTCTCCGCCTGGGCGTCGCAGGGAAG
GTTTTTAGAGTTTCCGTTGTTGCCACGCAAGGCGCGGATCAAACCACCTG
ACCGCACTATTTGGTGTCGCGCCAGCCTCGAATGTCTCGCCGCTTGGCAC
CGTATAGTGTACAGTCACTCGGTATAGACGCTAGTTTTTGCGTGTTGTCT
GTCCGCGCGGCACTCGCGGTATTATGGCGTGTAGAAACAGAGTAAGCAGC
TGTACATTCCCTGTGTGTAGGGCGTTCGCGTGAAAACCACCCAACGAGGC
GGGTCAAGAAGCTAAGCATACTTTTGAAATAAAAGTCGTTGCTTTTGAGT
GTCAAGAGCTATGTTAGGCTATGTCACATATTTTTGCCGTCCTCAATCGA
AAACGCGCCAAACTCGTTTTGCCCAAATGCCATCGACGCAGGGCTGGCAA
AAGGACGCGACGCTTCTTTGCTGATTCTTGGTTCGCCGACCCCGAAAACA
CGGAGGGGGGATCTCGGGGCACCCGTCAAAGAAGAAGAGCAACCCTCGTG
CCCCGTGCTCTGTAAAACTCCGACGGACCACGGTGAACCTCGGGCAGTGC
CCTCGCGTAGCGACCGTCCACTCGCCCTCTGTCCATCCGATGACGGTCGG
GAGTTTTGTGCTACAGGGGACGCGCCAGCTGGTGGGGCAGTGGAAGCAGA
GGTTGATGAAGGTGTGATTCCAGGGAAGCGCCCGATGGCGCCGGCTACCT
CGATTTCTCGCAGCAGTCTCCCTTGCCCTCGTCCGAAGCGGGCGGTGACC
TTCTCGCCTTCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig81212:179..1192+

>mRNA_H-elongata_contig81212.15778.1 ID=mRNA_H-elongata_contig81212.15778.1|Name=mRNA_H-elongata_contig81212.15778.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig81212:179..1192+ (Himanthalia elongata Himel1 dioecious)
ACGTTCCGCTACGATCCGAAGCCTGGCGCCAATAGCATCACCGAGTCGTT
TTCTCCGGGCGTCGATGAGACCACCTGCAGTGGCAACAATGGTATGGTCT
CCAACCATACAGACGTTCCGCTACGATCCGAAGCCTGGCGCCAATAGCAT
CACCGAGTCGTTTTCTCCGGGCGTCGATGAGACCACCTGCAGTGGCAACA
ATGGTATGGTCTCCAACCATACAGGGCTGGCAAAAGGACGCGACGCTTCT
TTGCTGATTCTTGGTTCGCCGACCCCGAAAACACGGAGGGGGGATCTCGG
GGCACCCGTCAAAGAAGAAGAGCAACCCTCGTGCCCCGTGCTCTGTAAAA
CTCCGACGGACCACGGTGAACCTCGGGCAGTGCCCTCGCGTAGCGACCGT
CCACTCGCCCTCTGTCCATCCGATGACGGTCGGGAGTTTTGTGCTACAGG
GGACGCGCCAGCTGGTGGGGCAGTGGAAGCAGAGGTTGATGAAGGTGTGA
TTCCAGGGAAGCGCCCGATGGCGCCGGCTACCTCGATTTCTCGCAGCAGT
CTCCCTTGCCCTCGTCCGAAGCGGGCGGTGACCTTCTCGCCTTCCGGCTG
GCAAAAGGACGCGACGCTTCTTTGCTGATTCTTGGTTCGCCGACCCCGAA
AACACGGAGGGGGGATCTCGGGGCACCCGTCAAAGAAGAAGAGCAACCCT
CGTGCCCCGTGCTCTGTAAAACTCCGACGGACCACGGTGAACCTCGGGCA
GTGCCCTCGCGTAGCGACCGTCCACTCGCCCTCTGTCCATCCGATGACGG
TCGGGAGTTTTGTGCTACAGGGGACGCGCCAGCTGGTGGGGCAGTGGAAG
CAGAGGTTGATGAAGGTGTGATTCCAGGGAAGCGCCCGATGGCGCCGGCT
ACCTCGATTTCTCGCAGCAGTCTCCCTTGCCCTCGTCCGAAGCGGGCGGT
GACCTTCTCGCCTTCC
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