mRNA_H-elongata_contig81171.15773.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig81171.15773.1
Unique NamemRNA_H-elongata_contig81171.15773.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig81171.15773.1 vs. uniprot
Match: D7FIS6_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS6_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 5.340e-26
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 1
Query:   58 MQGDTFVSVGGKSAVTRQPKTEEERRGAYRAMFACPTHSIRMETADPATKAALDDFPFPVDAERLPG 258
            MQG+TF    GKSAV RQP+TEEERRGAYRAM ACPT SIR+E +DP  + AL DFPFPVD+ERLPG
Sbjct:    1 MQGETFAHKSGKSAVVRQPETEEERRGAYRAMHACPTSSIRVEASDPIARDALKDFPFPVDSERLPG 67          
BLAST of mRNA_H-elongata_contig81171.15773.1 vs. uniprot
Match: A0A835Z392_9STRA (4Fe-4S single cluster domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z392_9STRA)

HSP 1 Score: 103 bits (258), Expect = 9.090e-25
Identity = 51/86 (59.30%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 VSRNLFVDESCIDCDTCRWMQGDTFVSVGGKSAVTRQPKTEEERRGAYRAMFACPTHSIRMETADPATKAALDDFPFPVDAERLPG 258
            V  NLFVDESCIDCDTCRWM    +     +S V +QP+ E+ERR AYRAM +CPT SIR+E  D   K A +DFPFPV  E LPG
Sbjct:   58 VEGNLFVDESCIDCDTCRWMAPGIYGRENSQSNVIKQPEGEQERREAYRAMVSCPTGSIRLEQPDALVKDARNDFPFPV--EGLPG 141          
BLAST of mRNA_H-elongata_contig81171.15773.1 vs. uniprot
Match: UPI00053C1A11 (uncharacterized protein LOC104807169 isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C1A11)

HSP 1 Score: 102 bits (255), Expect = 2.450e-24
Identity = 49/86 (56.98%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 VSRNLFVDESCIDCDTCRWMQGDTFVSVGGKSAVTRQPKTEEERRGAYRAMFACPTHSIRMETADPATKAALDDFPFPVDAERLPG 258
            V  +LFVD SCIDCDTCRWM  + F  V G SAV +QP  +EER  A +A+ +CPT SIR ET       A D FP PVD ERLPG
Sbjct:   64 VDGDLFVDNSCIDCDTCRWMAPEVFTRVDGMSAVIKQPSCKEERLNALQALVSCPTGSIRTETPPTDILRAQDTFPVPVDEERLPG 149          
BLAST of mRNA_H-elongata_contig81171.15773.1 vs. uniprot
Match: A0A1Y1IAW0_KLENI (Metallo-beta-lactamase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IAW0_KLENI)

HSP 1 Score: 99.0 bits (245), Expect = 1.070e-22
Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    1 VSRNLFVDESCIDCDTCRWMQGDTFVSVGGKSAVTRQPKTEEERRGAYRAMFACPTHSIRMETADPATKAALDDFPFPVDAERLPG 258
            V  + FVD +CIDCDTCRWM  +TF  + G+SAV RQP+T +ER  A +A+ ACPT SIR ET     K A + FP  +D E LPG
Sbjct:  104 VEGDFFVDHTCIDCDTCRWMAPETFSHLNGQSAVHRQPQTPDERTRALQALLACPTASIRTETPPKDIKDAQNTFPLAIDPETLPG 189          
BLAST of mRNA_H-elongata_contig81171.15773.1 vs. uniprot
Match: A0A835ZBL0_9STRA (Beta-lactamase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL0_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.480e-22
Identity = 48/86 (55.81%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 VSRNLFVDESCIDCDTCRWMQGDTFVSVGGKSAVTRQPKTEEERRGAYRAMFACPTHSIRMETADPATKAALDDFPFPVDAERLPG 258
            V+ NLFVDESCIDCD CRWM   T+  VG  +AV +QP TE E +GA RA+ ACPT SIR    DP  KAA   FP  V  ++L G
Sbjct:   13 VTGNLFVDESCIDCDACRWMAPATYKRVGLGAAVHKQPGTESEVQGALRAVLACPTGSIRSLKGDPRVKAAFTQFPVAVAPDQLKG 98          
BLAST of mRNA_H-elongata_contig81171.15773.1 vs. uniprot
Match: A0A7S0XQ11_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XQ11_HEMAN)

HSP 1 Score: 95.9 bits (237), Expect = 2.700e-22
Identity = 47/76 (61.84%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   10 NLFVDESCIDCDTCRWMQGDTFVSVGGKSAVTRQPKTEEERRGAYRAMFACPTHSIRMETADPATKAALDDFPFPV 237
            N+FVDESCIDC TCRWM    F     KSAVT QP++EEER GA +AM ACPT SIR E+ DP +K A   FP PV
Sbjct:  101 NVFVDESCIDCGTCRWMS-PCFTRSNDKSAVTVQPQSEEERLGALQAMVACPTGSIRTESPDPLSKQATLSFPLPV 175          
BLAST of mRNA_H-elongata_contig81171.15773.1 vs. uniprot
Match: A0A067JL29_JATCU (Lactamase_B domain-containing protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JL29_JATCU)

HSP 1 Score: 95.5 bits (236), Expect = 1.070e-21
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 VSRNLFVDESCIDCDTCRWMQGDTFVSVGGKSAVTRQPKTEEERRGAYRAMFACPTHSIRMETADPATKAALDDFPFPVDAERLPG 258
            V  + FVD +CIDCDTCRWM    F  +  KSAV +QP T EER  A +A+ +CPT+SIR E   P    A   FP P+D +++PG
Sbjct:   44 VEGDFFVDHTCIDCDTCRWMAPQIFTRIDAKSAVFKQPSTNEERLVALQALLSCPTNSIRTEKPAPDVLQAQKTFPMPIDEQKIPG 129          
BLAST of mRNA_H-elongata_contig81171.15773.1 vs. uniprot
Match: A0A7S2WU26_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU26_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.240e-21
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    1 VSRNLFVDESCIDCDTCRWMQ----GDTFVSVGGKSAVTRQPKTEEERRGAYRAMFACPTHSIRMETADPATKAALDDFPFPVDAERLPG 258
            V+ +LFVD SCIDCDTCRWM     G T   +GG+S V +QP+++ ER+ AY AM ACPT SIR+ET DP  +  +  FP  +D   +PG
Sbjct:   46 VAGSLFVDHSCIDCDTCRWMSSTVFGRTKAGLGGQSVVYKQPESDAERKDAYAAMVACPTGSIRLETPDPLMREVIGSFPRLIDPS-MPG 134          
BLAST of mRNA_H-elongata_contig81171.15773.1 vs. uniprot
Match: A0A7S1GTA0_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GTA0_HEMAN)

HSP 1 Score: 95.9 bits (237), Expect = 1.400e-21
Identity = 47/76 (61.84%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   10 NLFVDESCIDCDTCRWMQGDTFVSVGGKSAVTRQPKTEEERRGAYRAMFACPTHSIRMETADPATKAALDDFPFPV 237
            N+FVDESCIDC TCRWM    F     KSAVT QP++EEER GA +AM ACPT SIR E+ DP +K A   FP PV
Sbjct:   97 NVFVDESCIDCGTCRWMS-PCFTRSNDKSAVTVQPQSEEERLGALQAMVACPTGSIRTESPDPLSKQATLSFPLPV 171          
BLAST of mRNA_H-elongata_contig81171.15773.1 vs. uniprot
Match: D7FLY4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLY4_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.600e-21
Identity = 45/85 (52.94%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    4 SRNLFVDESCIDCDTCRWMQGDTFVSVGGKSAVTRQPKTEEERRGAYRAMFACPTHSIRMETADPATKAALDDFPFPVDAERLPG 258
            S + FVDESC+DCD C WM   TF   G  + V  QPK+EE+R  A++AM ACP  SIR+   D     AL+ FP PVD ERLPG
Sbjct:   14 SGDFFVDESCVDCDICCWMDPRTFKRSGLGAVVASQPKSEEDRMRAFQAMLACPAGSIRVMRGDRQVIKALESFPLPVDEERLPG 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig81171.15773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIS6_ECTSI5.340e-2673.13Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A835Z392_9STRA9.090e-2559.304Fe-4S single cluster domain-containing protein n=... [more]
UPI00053C1A112.450e-2456.98uncharacterized protein LOC104807169 isoform X1 n=... [more]
A0A1Y1IAW0_KLENI1.070e-2253.49Metallo-beta-lactamase family protein n=1 Tax=Kleb... [more]
A0A835ZBL0_9STRA1.480e-2255.81Beta-lactamase-like protein n=1 Tax=Tribonema minu... [more]
A0A7S0XQ11_HEMAN2.700e-2261.84Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A067JL29_JATCU1.070e-2148.84Lactamase_B domain-containing protein n=1 Tax=Jatr... [more]
A0A7S2WU26_9STRA1.240e-2151.11Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1GTA0_HEMAN1.400e-2161.84Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
D7FLY4_ECTSI1.600e-2152.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig81171contigH-elongata_contig81171:348..1105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.6e-20
Seed eggNOG ortholog2880.D7FIS6
EggNOG free text desc.4Fe-4S single cluster domain of Ferredoxin I
EggNOG OGs2QPS3@2759,COG0491@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931218.427664-CDS-H-elongata_contig81171:347..4821622931218.427664-CDS-H-elongata_contig81171:347..482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81171 348..482 -
1691679746.4179132-CDS-H-elongata_contig81171:347..4821691679746.4179132-CDS-H-elongata_contig81171:347..482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81171 348..482 -
1622931218.4463575-CDS-H-elongata_contig81171:982..11051622931218.4463575-CDS-H-elongata_contig81171:982..1105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81171 983..1105 -
1691679746.429771-CDS-H-elongata_contig81171:982..11051691679746.429771-CDS-H-elongata_contig81171:982..1105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig81171 983..1105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig81171.15773.1prot_H-elongata_contig81171.15773.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig81171 348..1105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig81171.15773.1

>prot_H-elongata_contig81171.15773.1 ID=prot_H-elongata_contig81171.15773.1|Name=mRNA_H-elongata_contig81171.15773.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
VSRNLFVDESCIDCDTCRWMQGDTFVSVGGKSAVTRQPKTEEERRGAYRA
MFACPTHSIRMETADPATKAALDDFPFPVDAERLPG
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mRNA from alignment at H-elongata_contig81171:348..1105-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig81171.15773.1 ID=mRNA_H-elongata_contig81171.15773.1|Name=mRNA_H-elongata_contig81171.15773.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=758bp|location=Sequence derived from alignment at H-elongata_contig81171:348..1105- (Himanthalia elongata Himel1 dioecious)
GTTTCCAGGAATCTTTTCGTGGACGAGTCGTGTATAGACTGCGATACGTG CCGGTGGATGCAAGGCGACACGTTCGTCAGCGTCGGCGGGAAGTCGGCCG TTACTCGGCAGCCCAAGACAGAGGTACGGCAACAGCCCACCACCGTCCAC CCAACCCTCCCGTATTGCGCGGTACACTCAACGATGCTTGTCGATGCAGA ATGGTCTCCGTTTTGTTTGTTTCTTTGTTATTGTTCCGCCTACCTCCTGC TGTTGAATACGGAATTATTTGGAAATTCCGTGCATTCCTAAATGTTGGCT GGTTATTGCTCGGGATTCTTTTGCTCTTTGTTTTTCCGTTTTATTATTTG AAGCTTCGGGGGCTTGGCCGTCGTCGGCAAGAGCTTCAAAACGCGCCGCA ACCCTTCGTCGCGATTCTCACCGACCACGCCGCGGAGTATCGTTGAGCCT GCGGACTAGCACGCCCGCGTTTCTGTTGCCGTTCCACCACGAATACGAAG GCGTTTTCGCTCGGGTCACCCTGATATGTTTTTGCTGTGATTCTTCTTTT GGTGCGGTGGGGGGGGGGGCGTTCCGTTTGGAGTGTTGTGGATTCTTTTT ACTTTCGTCGTGGACACTTCCAGGAAGAAAGGCGCGGTGCCTACAGGGCG ATGTTCGCGTGTCCAACGCACTCGATCAGGATGGAGACGGCCGATCCCGC GACCAAGGCGGCCCTCGACGACTTTCCGTTCCCGGTCGACGCGGAACGCC TGCCAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig81171:348..1105-

>mRNA_H-elongata_contig81171.15773.1 ID=mRNA_H-elongata_contig81171.15773.1|Name=mRNA_H-elongata_contig81171.15773.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig81171:348..1105- (Himanthalia elongata Himel1 dioecious)
GTTTCCAGGAATCTTTTCGTGGACGAGTCGTGTATAGACTGCGATACGTG
CCGGTGGATGCAAGGCGACACGTTCGTCAGCGTCGGCGGGAAGTCGGCCG
TTACTCGGCAGCCCAAGACAGAGGTTTCCAGGAATCTTTTCGTGGACGAG
TCGTGTATAGACTGCGATACGTGCCGGTGGATGCAAGGCGACACGTTCGT
CAGCGTCGGCGGGAAGTCGGCCGTTACTCGGCAGCCCAAGACAGAGGAAG
AAAGGCGCGGTGCCTACAGGGCGATGTTCGCGTGTCCAACGCACTCGATC
AGGATGGAGACGGCCGATCCCGCGACCAAGGCGGCCCTCGACGACTTTCC
GTTCCCGGTCGACGCGGAACGCCTGCCAGGCGAAGAAAGGCGCGGTGCCT
ACAGGGCGATGTTCGCGTGTCCAACGCACTCGATCAGGATGGAGACGGCC
GATCCCGCGACCAAGGCGGCCCTCGACGACTTTCCGTTCCCGGTCGACGC
GGAACGCCTGCCAGGC
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