mRNA_H-elongata_contig80896.15745.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80896.15745.1
Unique NamemRNA_H-elongata_contig80896.15745.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig80896.15745.1 vs. uniprot
Match: D8LNG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG1_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.380e-15
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = -3 
Query:    2 MSDAALKIDPDFYNRRLLDTEANVDQSRRIYRAGGGSXXXXXXXXXXXXXXXXXXRMNGGYGAPELSDYLVRQHSLLGLYLSLNPRDE 265
            MSDAA+K+DPD+YNR LL+T+  +DQSRR    G G XXXXXXXXXXXXXXXXXX            DYLVRQHSLLGLYLSLNP DE
Sbjct:    1 MSDAAMKVDPDYYNRSLLETDTRMDQSRRAAATGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYLVRQHSLLGLYLSLNPGDE 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80896.15745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNG1_ECTSI1.380e-1568.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80896contigH-elongata_contig80896:1227..1568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size344
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931215.1303673-CDS-H-elongata_contig80896:1226..15681622931215.1303673-CDS-H-elongata_contig80896:1226..1568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80896 1227..1568 +
1691679744.9250844-CDS-H-elongata_contig80896:1226..15681691679744.9250844-CDS-H-elongata_contig80896:1226..1568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80896 1227..1568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80896.15745.1prot_H-elongata_contig80896.15745.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80896 1227..1568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80896.15745.1

>prot_H-elongata_contig80896.15745.1 ID=prot_H-elongata_contig80896.15745.1|Name=mRNA_H-elongata_contig80896.15745.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
LRHVDSETDINPAGNAAVQGSQKAPEHRSLRSSGRRRCLRSRTLQQSRCL
LHFLLQHGKFSEIDPRLPLCPTVCGCRSQDRSSRLHPTLFHGGSLVAAQY
TQALQSAEFSLIA*
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mRNA from alignment at H-elongata_contig80896:1227..1568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80896.15745.1 ID=mRNA_H-elongata_contig80896.15745.1|Name=mRNA_H-elongata_contig80896.15745.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig80896:1227..1568+ (Himanthalia elongata Himel1 dioecious)
CTTCGTCACGTGGATTCAGAGACAGATATAAACCCAGCAGGGAATGCTGC
CGTACAAGGTAGTCAGAAAGCTCCGGAGCACCGTAGCCTCCGTTCATCCG
GCCGCCGCCGCTGCCTCCGCTCGCGAACCCTCCAGCAAAGCCGTTGTCTC
CTCCACTTCCTCCTCCAGCACGGTAAATTCTCCGAGATTGATCCACGTTT
GCCTCTGTGTCCAACAGTCTGCGGTTGTAGAAGTCAGGATCGATCTTCAA
GGCTGCATCCGACATTATTCCACGGCGGCTCTCTCGTAGCGGCACAATAT
ACTCAAGCTCTGCAGTCCGCAGAGTTCTCCCTCATTGCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig80896:1227..1568+

>mRNA_H-elongata_contig80896.15745.1 ID=mRNA_H-elongata_contig80896.15745.1|Name=mRNA_H-elongata_contig80896.15745.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig80896:1227..1568+ (Himanthalia elongata Himel1 dioecious)
CTTCGTCACGTGGATTCAGAGACAGATATAAACCCAGCAGGGAATGCTGC
CGTACAAGGTAGTCAGAAAGCTCCGGAGCACCGTAGCCTCCGTTCATCCG
GCCGCCGCCGCTGCCTCCGCTCGCGAACCCTCCAGCAAAGCCGTTGTCTC
CTCCACTTCCTCCTCCAGCACGGTAAATTCTCCGAGATTGATCCACGTTT
GCCTCTGTGTCCAACAGTCTGCGGTTGTAGAAGTCAGGATCGATCTTCAA
GGCTGCATCCGACATTATTCCACGGCGGCTCTCTCGTAGCGGCACAATAT
ACTCAAGCTCTGCAGTCCGCAGAGTTCTCCCTCATTGCTTAACTTCGTCA
CGTGGATTCAGAGACAGATATAAACCCAGCAGGGAATGCTGCCGTACAAG
GTAGTCAGAAAGCTCCGGAGCACCGTAGCCTCCGTTCATCCGGCCGCCGC
CGCTGCCTCCGCTCGCGAACCCTCCAGCAAAGCCGTTGTCTCCTCCACTT
CCTCCTCCAGCACGGTAAATTCTCCGAGATTGATCCACGTTTGCCTCTGT
GTCCAACAGTCTGCGGTTGTAGAAGTCAGGATCGATCTTCAAGGCTGCAT
CCGACATTATTCCACGGCGGCTCTCTCGTAGCGGCACAATATACTCAAGC
TCTGCAGTCCGCAGAGTTCTCCCTCATTGCTTAA
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