mRNA_H-elongata_contig80750.15727.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80750.15727.1
Unique NamemRNA_H-elongata_contig80750.15727.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80750.15727.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.280e-23
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 1
Query:    1 LQPLWDALEIGDNSTEESFETRVYDLLPPNPVFFHYMGSLTTPPCTEGVTWIVMNEPV 174
            ++ LWD L+IG  +T+E F TRVYD++P NPVF HYMGSLTTPPCTEGV WIVM++PV
Sbjct:   42 IEHLWDVLDIGKPTTDEVFVTRVYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPV 99          
BLAST of mRNA_H-elongata_contig80750.15727.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA)

HSP 1 Score: 96.7 bits (239), Expect = 7.680e-23
Identity = 39/58 (67.24%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    1 LQPLWDALEIGDNSTEESFETRVYDLLPPNPVFFHYMGSLTTPPCTEGVTWIVMNEPV 174
            ++ LWD L+IG+ +T+E F TR+YD++P NPVF HYMGSLTTPPCTEGV WIVM++PV
Sbjct:  188 IEHLWDVLDIGETTTKEVFTTRIYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPV 245          
BLAST of mRNA_H-elongata_contig80750.15727.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.170e-14
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 LQPLWDALEIGDNSTEESFETRVYDLLPPNPVFFHYMGSLTTPPCTEGVTWIVMNEP 171
            L+P+W+ +++  +  EE F    Y LLP  P F  Y GSLTTPPCTEGV WI+M+EP
Sbjct:  193 LEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEP 249          
BLAST of mRNA_H-elongata_contig80750.15727.1 vs. uniprot
Match: A0A268TXX1_9HELI (Alpha-carbonic anhydrase domain-containing protein n=1 Tax=Helicobacter sp. 12S02232-10 TaxID=1476197 RepID=A0A268TXX1_9HELI)

HSP 1 Score: 66.6 bits (161), Expect = 1.000e-11
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 LQPLWDALEIGDNSTEESFETRVYDLLPPNPVFFHYMGSLTTPPCTEGVTWIVMNEPV 174
            L P+W+A+      T    +  + DL+P    F+H+ GSLTTPPCTEGVTWIV+ +P+
Sbjct:  157 LAPIWEAMPEKSGETSYPKKIALQDLIPKKTYFYHFNGSLTTPPCTEGVTWIVLKKPL 214          
BLAST of mRNA_H-elongata_contig80750.15727.1 vs. uniprot
Match: A0A432SM83_9PROT (Alpha-carbonic anhydrase domain-containing protein n=1 Tax=Sulfurimonas sp. TaxID=2022749 RepID=A0A432SM83_9PROT)

HSP 1 Score: 61.2 bits (147), Expect = 1.470e-10
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   22 LEIGDNSTEESFETRVYDLLPPNPVFFHYMGSLTTPPCTEGVTWIVMNEPVII 180
            L+ GD    ++      DLLP +  F+HY+GSLTTPPCT+ V W VM EP+ I
Sbjct:   39 LKEGDRKVSDTITLNAKDLLPTDKGFYHYLGSLTTPPCTQIVEWYVMKEPITI 91          
BLAST of mRNA_H-elongata_contig80750.15727.1 vs. uniprot
Match: A0A2S9H170_9BURK (Eukaryotic-type carbonic anhydrase n=1 Tax=Solimicrobium silvestre TaxID=2099400 RepID=A0A2S9H170_9BURK)

HSP 1 Score: 63.9 bits (154), Expect = 1.870e-10
Identity = 27/59 (45.76%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 LQPLWDALEIGDNSTEESFET-RVYDLLPPNPVFFHYMGSLTTPPCTEGVTWIVMNEPV 174
            +Q +W+ + +  N T +   T  +Y +LP N  ++ YMGSLTTPPCTEGV W+V  EP+
Sbjct:  273 IQTIWNNMPLEKNDTVQPSGTIDMYQILPANRQYYTYMGSLTTPPCTEGVLWVVFKEPI 331          
BLAST of mRNA_H-elongata_contig80750.15727.1 vs. uniprot
Match: UPI0003F5F94C (carbonic anhydrase family protein n=1 Tax=Chitinilyticum aquatile TaxID=362520 RepID=UPI0003F5F94C)

HSP 1 Score: 62.8 bits (151), Expect = 2.580e-10
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:    1 LQPLWDALEIGDNSTEESFETRVYDLLPPNPVFFHYMGSLTTPPCTEGVTWIVMNEPVII 180
            L+  W  L   + + ++      +DLLP N  +F + GSLTTPPCTEGV W VM EPV +
Sbjct:  150 LKSFWGKLPAKEGTLDDGSSINAFDLLPENHGYFAFSGSLTTPPCTEGVRWQVMKEPVTV 209          
BLAST of mRNA_H-elongata_contig80750.15727.1 vs. uniprot
Match: A6QR75_AMPQE (Carbonic anhydrase n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A6QR75_AMPQE)

HSP 1 Score: 63.2 bits (152), Expect = 2.610e-10
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   25 EIGDNSTEESFETRVYDLLPPNPVFFHYMGSLTTPPCTEGVTWIVMNEPVII 180
            ++  NS E+  + ++YD LP N  ++ Y GSLTTPPCTE V WIVM  P+++
Sbjct:  190 QVAYNSEEQVQDVKLYDYLPENKDYYLYAGSLTTPPCTEAVQWIVMKNPIVV 241          
BLAST of mRNA_H-elongata_contig80750.15727.1 vs. uniprot
Match: A0A545SIA0_9GAMM (Carbonic anhydrase n=1 Tax=Halothiobacillaceae bacterium TaxID=2268194 RepID=A0A545SIA0_9GAMM)

HSP 1 Score: 62.0 bits (149), Expect = 3.160e-10
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:    1 LQPLWDAL--EIGDNSTEESFETRVYDLLPPNPVFFHYMGSLTTPPCTEGVTWIVMNEPV 174
            L P+W  +  E+G     E        LLP  P ++ Y GSLTTPPC+EGVTW++M EP+
Sbjct:  110 LAPIWANMPTELGKEKAVEGVTASAKALLPSKPEYYRYSGSLTTPPCSEGVTWLLMTEPL 169          
BLAST of mRNA_H-elongata_contig80750.15727.1 vs. uniprot
Match: A0A3S2XTQ9_9BURK (Carbonate dehydratase n=2 Tax=Inhella crocodyli TaxID=2499851 RepID=A0A3S2XTQ9_9BURK)

HSP 1 Score: 62.8 bits (151), Expect = 3.640e-10
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 LQPLWDALEIGDNSTEESFETR-VYDLLPPNPVFFHYMGSLTTPPCTEGVTWIVMNEPV 174
            +Q +W+ L +    T++      +  LLP +P +F YMGSLTTPPCTEGV W+VM +PV
Sbjct:  192 VQQVWNHLPLEKGDTQKGLVPMDLSALLPSDPAYFTYMGSLTTPPCTEGVLWLVMRQPV 250          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80750.15727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q9SMD6_9PHAE1.280e-2368.97Carbonic anhydrase alpha type (Fragment) n=1 Tax=L... [more]
F6MHT6_SACJA7.680e-2367.24Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
D8LB10_ECTSI2.170e-1452.63Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A268TXX1_9HELI1.000e-1146.55Alpha-carbonic anhydrase domain-containing protein... [more]
A0A432SM83_9PROT1.470e-1049.06Alpha-carbonic anhydrase domain-containing protein... [more]
A0A2S9H170_9BURK1.870e-1045.76Eukaryotic-type carbonic anhydrase n=1 Tax=Solimic... [more]
UPI0003F5F94C2.580e-1045.00carbonic anhydrase family protein n=1 Tax=Chitinil... [more]
A6QR75_AMPQE2.610e-1048.08Carbonic anhydrase n=1 Tax=Amphimedon queenslandic... [more]
A0A545SIA0_9GAMM3.160e-1045.00Carbonic anhydrase n=1 Tax=Halothiobacillaceae bac... [more]
A0A3S2XTQ9_9BURK3.640e-1047.46Carbonate dehydratase n=2 Tax=Inhella crocodyli Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80750contigH-elongata_contig80750:966..1379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue4.3e-12
Seed eggNOG ortholog2880.D8LB10
KEGG rclassRC02807
KEGG koko:K01672,ko:K01674,ko:K04413
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG3338@1,KOG0382@2759
EC2.7.11.1,4.2.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931213.262439-CDS-H-elongata_contig80750:966..10051622931213.262439-CDS-H-elongata_contig80750:966..1005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80750 967..1005 -
1691679744.1314318-CDS-H-elongata_contig80750:966..10051691679744.1314318-CDS-H-elongata_contig80750:966..1005Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80750 967..1005 -
1622931213.2828982-CDS-H-elongata_contig80750:1238..13791622931213.2828982-CDS-H-elongata_contig80750:1238..1379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80750 1239..1379 -
1691679744.1419547-CDS-H-elongata_contig80750:1238..13791691679744.1419547-CDS-H-elongata_contig80750:1238..1379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80750 1239..1379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80750.15727.1prot_H-elongata_contig80750.15727.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80750 967..1379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80750.15727.1

>prot_H-elongata_contig80750.15727.1 ID=prot_H-elongata_contig80750.15727.1|Name=mRNA_H-elongata_contig80750.15727.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
LQPLWDALEIGDNSTEESFETRVYDLLPPNPVFFHYMGSLTTPPCTEGVT
WIVMNEPVII
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mRNA from alignment at H-elongata_contig80750:966..1379-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80750.15727.1 ID=mRNA_H-elongata_contig80750.15727.1|Name=mRNA_H-elongata_contig80750.15727.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=414bp|location=Sequence derived from alignment at H-elongata_contig80750:966..1379- (Himanthalia elongata Himel1 dioecious)
CTCCAGCCCCTGTGGGACGCTCTGGAAATTGGTGACAACTCCACCGAGGA ATCATTCGAGACACGTGTGTACGACCTTCTGCCTCCAAACCCAGTATTTT TCCACTACATGGGATCTCTAACAACGCCTCCCTGTACGGAGGTGAGAACG GCAGCCATCCTGCCGTACGTGGGAAAAATGATAGAGCGCTATGCGCGGAA GAATCACGGGCTGTAGTTTTCTTGCTGCGCGAACGAAGCTTCCTTGCTCC TGGGATACACCTTGTGGTGGATATGTTGGTCCACTCCCTTCCTTCCCGCT AGAGTAAATAAAAGAAACTCCAAAAGTACTATCCCTCACTCACATTCAAC TGTCTCCGTTACATTACAACGCAGGGCGTTACGTGGATAGTCATGAATGA GCCTGTGATCATTG
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Coding sequence (CDS) from alignment at H-elongata_contig80750:966..1379-

>mRNA_H-elongata_contig80750.15727.1 ID=mRNA_H-elongata_contig80750.15727.1|Name=mRNA_H-elongata_contig80750.15727.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig80750:966..1379- (Himanthalia elongata Himel1 dioecious)
CTCCAGCCCCTGTGGGACGCTCTGGAAATTGGTGACAACTCCACCGAGGA
ATCATTCGAGACACGTGTGTACGACCTTCTGCCTCCAAACCCAGTATTTT
TCCACTACATGGGATCTCTAACAACGCCTCCCTGTACGGAGCTCCAGCCC
CTGTGGGACGCTCTGGAAATTGGTGACAACTCCACCGAGGAATCATTCGA
GACACGTGTGTACGACCTTCTGCCTCCAAACCCAGTATTTTTCCACTACA
TGGGATCTCTAACAACGCCTCCCTGTACGGAGGGCGTTACGTGGATAGTC
ATGAATGAGCCTGTGATCATTGGCGTTACGTGGATAGTCATGAATGAGCC
TGTGATCATT
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