mRNA_H-elongata_contig80737.15724.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig80737.15724.1 vs. uniprot
Match: D7G1B2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1B2_ECTSI) HSP 1 Score: 177 bits (449), Expect = 1.000e-49 Identity = 87/143 (60.84%), Postives = 106/143 (74.13%), Query Frame = 1
Query: 1 MNGEVFGGFAACAWASTCQYYGTGECFLFKIEGEHSTGETGDASTKEA--EGVGDGDSGG-------KTVMNGEVVAYRWTGMNMYLQYSDCAGVGMGGGGKDAAFGLFIGDDFLSGSTGRCDTFSNPPLCSHGQFQISQVEV 402
M GEVFGGFA AW+S CQYYGTGECFLFK+EGE T E+ + T+ + DG +G KT++ G++ A+ WTGMNMYLQYSD G+ MGGGG D +FGLFIG+DFL+GSTG+CDT+ NPPLCS QFQ+SQVEV
Sbjct: 501 MRGEVFGGFATSAWSSGCQYYGTGECFLFKMEGERVTVESEEEQTENDSDDRSADGRTGSSETVAASKTLLEGDLTAFGWTGMNMYLQYSDGKGIAMGGGGADGSFGLFIGEDFLTGSTGKCDTYGNPPLCSQEQFQVSQVEV 643
BLAST of mRNA_H-elongata_contig80737.15724.1 vs. uniprot
Match: A0A7S2NUQ3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NUQ3_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 7.760e-18 Identity = 49/139 (35.25%), Postives = 66/139 (47.48%), Query Frame = 1
Query: 4 NGEVFGGFAACAWASTCQ----YYGTGECFLFKIEGEHSTGETGDASTKEAEGVGDGDSGGKTVMNGEVVAYRWTGMNMYLQYSDCAG--VGMGGGGKDAAFGLFIGDDFLSGSTGRCDTFSNPPLCSHGQFQISQVEV 402
G +FGG+A W S Q +YGTG+ L++I ++ +V Y+W+GMN Y+Q D + MGGGG FGL + +DF GSTGRC TF N PLC G+F + EV
Sbjct: 706 TGAIFGGYADSTWQSPLQAGNTFYGTGQAMLYRIMDDN-----------------------------QVKIYKWSGMNRYIQLCDTTDKRIAMGGGGTGGNFGLCVEEDFSRGSTGRCQTFENEPLCEGGEFDVLDFEV 815
BLAST of mRNA_H-elongata_contig80737.15724.1 vs. uniprot
Match: A0A4D9DBE4_9STRA (TLDc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBE4_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 3.070e-16 Identity = 57/144 (39.58%), Postives = 74/144 (51.39%), Query Frame = 1
Query: 10 EVFGGFAACAWA--STCQ---YYGTGECFLFKIEGEH-------STGETG--DASTKEAEGVGDGDSGGKTVMNGEVVAYRWTGMNMYLQYSDCAGVGMGGGGKDAAFGLFIGDDFLSGSTGRCDTFSNPPLCSHGQFQISQVE 399
EVFGGF WA +T YYGTGE FL+K+ H S E G +A +E + G++ + + + WT N Y S +GMGGGG + FGLFIGD+FL GS+G +TF N PL H F+I E
Sbjct: 132 EVFGGFTTTPWAVHTTAAGPLYYGTGESFLYKVRPSHRSQGSSLSISENGIFNAEDEEEDLKRPGENEKSSTRRKMIQFFPWTRENTYYMLSTENSLGMGGGGGE--FGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFE 273
BLAST of mRNA_H-elongata_contig80737.15724.1 vs. uniprot
Match: A0A6U3ZCA5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3ZCA5_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 4.700e-16 Identity = 49/140 (35.00%), Postives = 65/140 (46.43%), Query Frame = 1
Query: 7 GEVFGGFAACAWASTCQ------YYGTGECFLFKIEGEHSTGETGDASTKEAEGVGDGDSGGKTVMNGEVVAYRWTGMNMYLQYSDC--AGVGMGGGGKDAAFGLFIGDDFLSGSTGRCDTFSNPPLCSHGQFQISQVEV 402
G +FGG+A W + + +YG+ + LF+ G+ +T + EVV Y+WTG N Y+Q D V GGGG D FGL I DDF G+TG C TF N LC G F + +EV
Sbjct: 32 GRLFGGYADTRWEARHKNRQADGFYGSAQACLFRFP------RCGETTTXXX-----------XXDDNEVVIYKWTGANRYIQLCDAYKRAVAFGGGGDDGDFGLCIEDDFRRGTTGHCSTFENEALCEEGYFDVVDLEV 154
BLAST of mRNA_H-elongata_contig80737.15724.1 vs. uniprot
Match: A0A7S2PL69_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PL69_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 5.390e-16 Identity = 49/139 (35.25%), Postives = 70/139 (50.36%), Query Frame = 1
Query: 4 NGEVFGGFAACAWASTCQ----YYGTGECFLFKIEGEHSTGETGDASTKEAEGVGDGDSGGKTVMNGEVVAYRWTGMNMYLQYSDCAG--VGMGGGGKDAAFGLFIGDDFLSGSTGRCDTFSNPPLCSHGQFQISQVEV 402
G++FG FA W +YG+G+ FLF ++ S + +A E + +V Y+W G N+YLQ D + + MGGGG +FGL + D F GSTG C+TF NP LCS +F I +E+
Sbjct: 360 RGDIFGAFANDTWEERGSRGKTFYGSGQSFLFSVKS--SLAKVDNAPICEMQPYA-------PTNRDQVEIYKWKGTNVYLQMCDTSNDRIAMGGGGNSGSFGLCVEDSFRRGSTGYCETFGNPRLCSDNEFDILDMEM 489
BLAST of mRNA_H-elongata_contig80737.15724.1 vs. uniprot
Match: A0A7S1Y6A2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y6A2_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 3.660e-15 Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 1
Query: 10 EVFGGFAACAWASTCQ----YYGTGECFLFKIEGEHSTGETGDASTKEAEGVGDGDSGGKTVMNGEVVAYRWTGMNMYLQYSDCAGVGMGGGGKDAAFGLFIGDDFLSGSTGRCDTFSNPPLC 366
++FGG+A AW ++ Q +YG+ + L++I +H+ G+++TK E + + Y+W+G+N Y+QY D A M GG FGL + DF GSTGRC TF+N PLC
Sbjct: 81 QIFGGYADSAWIASHQGNPEFYGSAQASLYRIV-QHNNIANGNSTTKNGEDI-----------PFSLRVYKWSGVNRYIQYVDVARNMMALGGGGGEFGLCLESDFQRGSTGRCATFNNEPLC 191
BLAST of mRNA_H-elongata_contig80737.15724.1 vs. uniprot
Match: A0A7R9WFY7_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WFY7_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.560e-14 Identity = 48/141 (34.04%), Postives = 63/141 (44.68%), Query Frame = 1
Query: 10 EVFGGFAACAW------ASTCQYYGTGECFLFKIEGEHSTGETGDASTKEAEGVGDGDSGGKTVMNGEVVAYRWTGMNMYLQYSDCAG--VGMGGGGKDAAFGLFIGDDFLSGSTGRCDTFSNPPLCSH---GQFQISQVE 399
EVFG ++ + AS YYG+ + L++I +G+V Y+WTGMN Y+Q D + GGGG FGL + DDF GSTGRC TF N PLC G F++ VE
Sbjct: 28 EVFGAYSDSPYEAKHHAASASSYYGSAQACLWRI----------------------------LPSSGDVKPYKWTGMNRYIQLVDVRSKMIAFGGGGNAGEFGLCVEDDFRRGSTGRCGTFGNDPLCDSSDGGSFEVVDVE 140
BLAST of mRNA_H-elongata_contig80737.15724.1 vs. uniprot
Match: A0A7S1V0Q1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V0Q1_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 5.570e-12 Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 1
Query: 55 QYYGTGECFLFKIEGEHSTGETGDASTKEAEGVGDGDSGGKTVMNGEVVAYRWTGMNMYLQYSDCAGVGMGGGGKDAAFGLFIGDDFLSGSTGRCDTFSNPPLC 366
++YG+ + L++I +H+ G+++TK E + + Y+W+G+N Y+QY D A M GG FGL + DF GSTGRC TF+N PLC
Sbjct: 14 EFYGSAQASLYRIV-QHNNIANGNSTTKNGEDI-----------PFSLRVYKWSGVNRYIQYVDVARNMMALGGGGGEFGLCLESDFQRGSTGRCATFNNEPLC 105
BLAST of mRNA_H-elongata_contig80737.15724.1 vs. uniprot
Match: A0A077WWV6_9FUNG (TLDc domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WWV6_9FUNG) HSP 1 Score: 70.9 bits (172), Expect = 8.020e-12 Identity = 43/131 (32.82%), Postives = 60/131 (45.80%), Query Frame = 1
Query: 10 EVFGGFAACAWASTCQYYGTGECFLFKIEGEHSTGETGDASTKEAEGVGDGDSGGKTVMNGEVVAYRWTGMNMYLQYSDCAGVGMGGGGKDAAFGLFIGDDFLSGSTGRCDTFSNPPLCSHGQFQISQVEV 402
EVFGG+ + +YYG+GECFL++++ + N + YRW G N YL YSD + +GGG D GL++ D L G T C TF N PL H F+ +E+
Sbjct: 227 EVFGGYLSEPLHMESRYYGSGECFLWRMDMQSG--------------------------NPRPLVYRWAGKNDYLIYSDRNYLSLGGG--DGKVGLWLHGDLLHGHTEPCATFENEPLADHTTFECLALEI 329
BLAST of mRNA_H-elongata_contig80737.15724.1 vs. uniprot
Match: A0A7S0KN75_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KN75_MICPS) HSP 1 Score: 70.9 bits (172), Expect = 8.860e-12 Identity = 45/135 (33.33%), Postives = 66/135 (48.89%), Query Frame = 1
Query: 4 NGEVFGGFAACAWASTCQYYGTGECFLFKIEGEHSTGETGDASTKEAEGVGDGDSGGKTVMNGEVVAYRWTGMNMYLQY--SDCAGVGMGGGGKDAAFGLFIGDDFLSGSTGRCDTFSNPPLCSHGQFQISQVEV 402
+GE FG F W +YYGTGE F+F +EG G ++T+ A G G + WT N Y + ++CA VG G A F L++ ++ G++ R DTF N PL S +F ++ VE+
Sbjct: 236 SGERFGAFTTEHWRVAPRYYGTGESFVFVLEG------AGGSNTEVA--------GSNPAAGGGARVFPWTQRNNYFVFGRNECAAVGGG-----AGFALWLDEELARGNSARSDTFGNDPLSSEHEFDVACVEL 351 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80737.15724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig80737.15724.1 >prot_H-elongata_contig80737.15724.1 ID=prot_H-elongata_contig80737.15724.1|Name=mRNA_H-elongata_contig80737.15724.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp MNGEVFGGFAACAWASTCQYYGTGECFLFKIEGEHSTGETGDASTKEAEGback to top mRNA from alignment at H-elongata_contig80737:806..2881- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig80737.15724.1 ID=mRNA_H-elongata_contig80737.15724.1|Name=mRNA_H-elongata_contig80737.15724.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2076bp|location=Sequence derived from alignment at H-elongata_contig80737:806..2881- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig80737:806..2881- >mRNA_H-elongata_contig80737.15724.1 ID=mRNA_H-elongata_contig80737.15724.1|Name=mRNA_H-elongata_contig80737.15724.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig80737:806..2881- (Himanthalia elongata Himel1 dioecious)back to top |