mRNA_H-elongata_contig8072.15722.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8072.15722.1
Unique NamemRNA_H-elongata_contig8072.15722.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8072.15722.1 vs. uniprot
Match: D7FPV1_ECTSI (Similar to U3 small nucleolar RNA interacting protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPV1_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 5.390e-119
Identity = 259/369 (70.19%), Postives = 293/369 (79.40%), Query Frame = 1
Query:    1 VAKGLKDRQIPTSGMRRMRGHRLTPTCVALSPDDASAFSGSKDNSIVRWDVETGTRFTMLPQWRRVNKGKVSDVNAHNKEVLSLAVSGDGRYLASGGRDRLINVWDCRTNTTVEIFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAIDSWRKERVVTGGRDRTVRLWKVLEDSHLVFRPVGGGGIDCVRMIXXXXXXXXXXXXXXXXXFAMKKKPAVLASAAHGQGPAGVPRWITSVSCLKQSDLVISGSNDGLVRLWRADLEERSLQQVASVPLTGFVNGLAVSSTGKFFVAAVGKEHRLGRWESLKGARNEVCVVPLPT---EDVSVTVESKSAMEEDAVDVDGKE 1098
            VAKGL+ +QI  + +R MRGH+L+PTCV LSPDD +AFSGSKDNSI+RWDVETG R TMLP WR++  GKV  V AH+KEVL+LAVSGDGRYLASGGRDRLINVWDCRT+T VE F XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  NAIDSWRKER+VT                                  XXXXXXXXXXXXXXXXX AMKKKPA+L  AAHG    G+PRWI+++ CLKQSDLV+SGSNDG VRLWRAD+E RSL+QVASVPL GFVNGLAVSSTGKF VAAVG+EHRLGRWE  K ARNE+CVVPLP+   ++V+V ++++SA EED  D+DG+E
Sbjct:  152 VAKGLQGQQISPTAVRHMRGHKLSPTCVVLSPDDTTAFSGSKDNSIIRWDVETGKRVTMLPHWRKLPGGKVPSVKAHSKEVLTLAVSGDGRYLASGGRDRLINVWDCRTDTVVETFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEINAIDSWRKERLVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMKKKPAMLVPAAHGYSAVGIPRWISAIGCLKQSDLVVSGSNDGSVRLWRADVEARSLEQVASVPLEGFVNGLAVSSTGKFLVAAVGQEHRLGRWEHQKKARNEICVVPLPSGAEDEVAVAMDTESA-EEDQGDIDGEE 519          
BLAST of mRNA_H-elongata_contig8072.15722.1 vs. uniprot
Match: A0A6H5KZR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZR0_9PHAE)

HSP 1 Score: 288 bits (737), Expect = 3.190e-93
Identity = 162/292 (55.48%), Postives = 189/292 (64.73%), Query Frame = 1
Query:  238 EVLSLAVSGDGRYLASGGRDRLINVWDCRTNTTVEIFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAIDSWRKERVVTGGRDRTV--RLWKVLEDSHLVFRPVGGGGIDCVRMIXXXXXXXXXXXXXXXXXFAMKKKPAVLASAAHGQGPAGVPRWITSVSCLKQSDLVISGSNDGLVRLWRADLEERSLQQVASVPLTGFVNGLAVSSTGKFFVAAVGKEHRLGRWESLKGARNEVCVVPLPT---EDVSVTVESKSAMEEDAVDVDGKE 1098
            +VL+LAVSGDGRYLASGGRDRLINVWDCRT+T VE FR                                                N++       + +G  DR V  RLWKVLEDSHLVFRPVGGG IDCVRM+                 FAMKKKPAVL  AAHG    G+PRWI+++ CLKQSDLV+SGSNDG VRLWRAD+E RSL+QVASVPL GFVNGLAVSSTGKF VAAVG+EHRLGRWE  K ARNE+CVVPLP+   ++ +V ++++SA EED  D+DG+E
Sbjct:    6 KVLTLAVSGDGRYLASGGRDRLINVWDCRTDTLVETFRGHQDTVSSLAFRA-----------------------------------NSL------ALFSGSHDRCVKVRLWKVLEDSHLVFRPVGGGSIDCVRMLNEDWFTTGGEDGSLALWFAMKKKPAVLVPAAHGYSAVGIPRWISAIGCLKQSDLVVSGSNDGSVRLWRADVEARSLEQVASVPLEGFVNGLAVSSTGKFLVAAVGQEHRLGRWEHQKKARNEICVVPLPSGVEDEGAVAMDTESA-EEDQGDIDGEE 255          
BLAST of mRNA_H-elongata_contig8072.15722.1 vs. uniprot
Match: A0A7S3YCM4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCM4_HETAK)

HSP 1 Score: 231 bits (589), Expect = 2.240e-69
Identity = 142/327 (43.43%), Postives = 197/327 (60.24%), Query Frame = 1
Query:   49 RMRGHRLTPTCVALSPDDASAFSGSKDNSIVRWDVETGTRFTMLPQWRRVNKGKVSDVNAHNKEVLSLAVSGDGRYLASGGRDRLINVWDCRTNTTVEIFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAIDSWRKERVVTGGRDRTVRLWKVLEDSHLVFRPVGGGGIDCVRMIXXXXXXXXXXXXXXXXXFAMKKKPA--VLASAAHGQGPAGVPRWITSVSCLKQSDLVISGSNDGLVRLWRADLEERSLQQVASVPLTGFVNGLAVSSTGKFFVAAVGKEHRLGRWESLKGARNEVCVVPLP 1023
            R   HRL+PTCVAL+ DD   ++G KDN++V+W++ETG R  + P W+    G  S    H  E+L++AVS DG+++A+GGRD+L+ V+D R+      F                                                  A+D+ R+ER  T G D T+RLWK+ ++S LVF+             XXXXXXXXXXXXXXXXXFA++K+PA  V A  AHG+G      W+T++   + SDLV SGS+ GLV+LWRA LE+R+L++VA+VPLTG++NGLAV+STG+  VAAVG+EHRLGRW+ ++ A+N + VV LP
Sbjct:    1 RRGAHRLSPTCVALAEDDRRCWTGGKDNALVQWELETGQRQFLKPMWKHTKGGPKS----HQGEILAVAVSSDGKFVAAGGRDKLVRVYDVRSGREEAAFPGHKDAVSALAFRRGAHALYSGGLDRCLNHWNVDEMGFVETLFGHQSGITALDALRRERCATVGEDATLRLWKLADESQLVFKDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXFALRKRPAAWVPAGQAHGEGA-----WVTALGGARDSDLVASGSSTGLVKLWRAGLEDRALEEVAAVPLTGYINGLAVTSTGRVLVAAVGQEHRLGRWDRIQSAKNGLAVVELP 318          
BLAST of mRNA_H-elongata_contig8072.15722.1 vs. uniprot
Match: A0A835Z4V0_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V0_9STRA)

HSP 1 Score: 233 bits (593), Expect = 7.850e-69
Identity = 142/334 (42.51%), Postives = 189/334 (56.59%), Query Frame = 1
Query:   43 MRRMRGHRLTPTCVALSPDDASAFSGSKDNSIVRWDVETGTRFTMLPQWRRVNKGKVSDV--------NAHNKEVLSLAVSGDGRYLASGGRDRLINVWDCRTNTTVEIFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAIDSWRKERVVTGGRDRTVRLWKVLEDSHLVFRPVGGGGIDCVRMIXXXXXXXXXXXXXXXXXFAMKKKPAVLASAAHGQGPAGVPRWITSVSCLKQSDLVISGSNDGLVRLWRADLEERSLQQVASVPLTGFVNGLAVSSTGKFFVAAVGKEHRLGRWESLKGARNEVCVVPL 1020
            +R + GHRL  TCVALS DDA+AFSGSKDN+++RWDVETG R  +  +W++    + +            H  EVL++A S DGRY+A+GGRD+L+ VWDCRT+  V  F                                                 NA+D++R+ER V+                                  XXXXXXXXXXXXXXXXXF +KKKP  +A+AAHG G  GV  W+ + + ++ SDL ++GS+DG +RLW  D + R+L+QV ++PL GFVNGL+V+STG+F VAAVG++HRLGRWE  K ARN VC+VPL
Sbjct:  122 IRALSGHRLAVTCVALSGDDATAFSGSKDNAVLRWDVETGARKVLCARWKKRPAAERAAXXXXXXXXEQEHCAEVLAIAASTDGRYVAAGGRDKLVRVWDCRTDEVVASFSGHRDAVTALAFRHGSYSLYSGSADRSIKHWGLSEMAYVETLFGHQGEVNALDAFRRERAVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNLKKKPVAVAAAAHGVGRNGVAPWVCAAAAVRSSDLAVTGSSDGYIRLWHCDTDARTLEQVNAIPLAGFVNGLSVASTGRFAVAAVGQDHRLGRWERQKDARNRVCIVPL 455          
BLAST of mRNA_H-elongata_contig8072.15722.1 vs. uniprot
Match: A0A8K1FMR6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMR6_PYTOL)

HSP 1 Score: 229 bits (584), Expect = 3.280e-67
Identity = 174/342 (50.88%), Postives = 229/342 (66.96%), Query Frame = 1
Query:    1 VAKGLKDRQIPTSGMRRMRGHRLTPTCVALSPDDASAFSGSKDNSIVRWDVETGTRFTMLPQWRRVNKGKVSDVNAHNKEVLSLAVSGDGRYLASGGRDRLINVWDCRTNTTVEIFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAIDSWRKERVVTGGRDRTVRLWKVLEDSHLVFRPVGGGGIDCVRMIXXXXXXXXXXXXXXXXXFAMKKKPAVLASAAHGQGPAGVPRWITSVSCLKQSDLVISGSNDGLVRLWRADLEERSLQQVASVPLTGFVNGLAVSSTGKFFVAAVGKEHRLGRWESLKGARNEVCVVPLPT 1026
            VA   ++ +  T   R ++GH+L  T + LS D  +AFS +KD +I+RWD+ T T+  +L     ++K        H + VL+LA++ DG+YLASGG D+L+ VWD   N  +E F+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX N +D+  KERVV+ GRDR+VR+WK+ E++ LVF     G +DCV+MI                 F  +KKPA +   AHG G     RWI+SV+ + ++DLV SGS DG +RLWRADL  R+L+ V  +PL GFVNGL     G+F +A VG+EHRLGRWE +K  +N + ++ LP+
Sbjct:  134 VASKYEEFEFDTDSTRFLKGHKLPVTALCLSEDGKTAFSAAKDGTILRWDLATQTKTKLLLPKDDISKA----TKDHERCVLALALNSDGKYLASGGYDKLLRVWDAEKNEVIETFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNGLDALYKERVVSCGRDRSVRMWKIPEETQLVFYG-NTGSMDCVKMINDEYYVTGGDDGSLSLWFNGRKKPAYVVPNAHGAG-----RWISSVTVMPRTDLVASGSCDGSIRLWRADLGARTLEPVGEIPLEGFVNGLCFDQKGRFLLAGVGQEHRLGRWERIKHVKNGLAIIALPS 465          
BLAST of mRNA_H-elongata_contig8072.15722.1 vs. uniprot
Match: A0A5D6XNE3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNE3_9STRA)

HSP 1 Score: 227 bits (578), Expect = 2.190e-66
Identity = 169/346 (48.84%), Postives = 223/346 (64.45%), Query Frame = 1
Query:   25 QIPTSGMRRMRGHRLTPTCVALSPDDASAFSGSKDNSIVRWDVETGTRFTMLPQWRRVNKGKVSDVNAHNKEVLSLAVSGDGRYLASGGRDRLINVWDCRTNTTVEIFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAIDSWRKERVVTGGRDRTVRLWKVLEDSHLVFRPVGGGGIDCVRMIXXXXXXXXXXXXXXXXXFAMKKKPAVLASAAHGQGPAGVPRWITSVSCLKQSDLVISGSNDGLVRLWRADLEERSLQQVASVPLTGFVNGLAVSSTGKFFVAAVGKEHRLGRWESLKGARNEVCVVPLPTEDVSVTVESKSA 1062
            +  T   R + GHRL  T V L+ D  +AFS SKD +I+RWD+   T+  +      V   K+     H K VL+LA+S DG++LASGG D+L+ VWD   +  +E F+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   + +DS  KERVV+ GRDR+VR+WK+ E++ LVF     G +DCV+M+                 F  +KKP  +   AHG G     +W+ SV+ + ++DLV SGS+DGL+RLW+ADL+ER L  VA++P+ G+VN L   S  +F +A VG+EHRLGRWE LK  +N + ++ LP  D     ES+SA
Sbjct:  150 EFDTDSTRFLPGHRLPVTSVCLADDGKTAFSASKDGAILRWDLAAQTKTRLALPSDDVATAKMD----HEKSVLALALSSDGKFLASGGCDKLVRVWDAEKSELLESFKGHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEVHGLDSLYKERVVSCGRDRSVRMWKIPEETQLVFYG-NSGSMDCVKMVTDEYYVTGGDDGSLSLWFNGRKKPVHVVPHAHGAG-----KWVASVAVMPRTDLVASGSSDGLIRLWKADLKERKLAPVATIPVPGYVNALVFDSKARFLLAGVGQEHRLGRWERLKRVKNGIAIIALPNVDEEAASESESA 485          
BLAST of mRNA_H-elongata_contig8072.15722.1 vs. uniprot
Match: W7U1Y2_9STRA (U3 small nucleolar rna-interacting protein 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1Y2_9STRA)

HSP 1 Score: 221 bits (563), Expect = 1.330e-63
Identity = 175/370 (47.30%), Postives = 220/370 (59.46%), Query Frame = 1
Query:   52 MRGHRLTPTCVALSPDDASAFSGSKDNSIVRWDVETGTRFTMLPQWRRVNKGKVSDVNAHNKEVLSLAVSGDGRYLASGGRDRLINVWDCRTN--------TTVEIFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAIDSWRKERVVTGGRDRTVRLWKVLEDSHLVFR---PVGGGG----------IDCVRMIXXXXXXXXXXXXXXXXXFAMKKKPAVLASAAHGQGPAGVPRWITSVSCLKQSDLVISGSNDGLVRLWRADLEER----SLQQVASVPLT-GFVNGLAVSSTGKFFVAAVGKEHRLGRWESLKGARNEVCVVPLPTEDVSVTVESKSAMEEDAVD 1083
            ++GH+L PTCV ++ D+ +AF+G KDN+I+R+D+E+G R   L  + R  +G  S    H KEVL+LAVS DGRYLA+GGRD+ I +WD R            V+ F  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              N ID+WR+ER VT GRDR+VR+WK+ ++SH++ +    VGGGG          +DC+ M+                    KKKP  +  AAHG    G  RWI+SV+ +K +DLV SGSNDG VRLWRA    +    SL+   +  L  G+VNGLA   +G   VAA GKEHRLGRW   KGA N + V+ LP E           M EDAVD
Sbjct:  165 LKGHKLAPTCVTITADERTAFTGGKDNAILRYDLESGRRTATLSSFWRGGQGYQS----HEKEVLALAVSSDGRYLAAGGRDKEIRIWDLRGRGHREGLVLKPVKTFAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMYVETLFGHQAEINGIDAWRRERPVTCGRDRSVRVWKLADESHMLLQCPQGVGGGGASKGLVMGGSLDCLSMLSEECFVTGGEDGMLAMWNVNKKKPVAVVPAAHG----GNSRWISSVAAIKGTDLVASGSNDGYVRLWRASTTPQGQGSSLESTGAALLCPGYVNGLAFGHSGSVLVAACGKEHRLGRWAPEKGAVNGLYVMRLPDE----------RMGEDAVD 516          
BLAST of mRNA_H-elongata_contig8072.15722.1 vs. uniprot
Match: K3X8R7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8R7_GLOUD)

HSP 1 Score: 216 bits (551), Expect = 1.390e-62
Identity = 172/358 (48.04%), Postives = 229/358 (63.97%), Query Frame = 1
Query:    1 VAKGLKDRQIPTSGMRRMRGHRLTPTCVALSPDDASAFSGSKDNSIVRWDVETGTRFTM-LPQWRRVNKGKVSDVNAHNKEVLSLAVSGDGRYLASGGRDRLINVWDCRTNTTVEIFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAIDSWRKERVVTGGRDRTVRLWKVLEDSHLVFRPVGGGGIDCVRMIXXXXXXXXXXXXXXXXXFAMKKKPAVLASAAHGQGPAGVPRWITSVSCLKQSDLVISGSNDGLVRLWRADLEERSLQQVASVPLTGFVNGLAVSSTGKFFVAAVGKEHRLGRWESLKGARNEVCVVPLPTEDVSVTVESKSAMEE 1071
            VA   +D +      + + GHRL  T VAL+ D  +AFS SKD +I+RW++   T+  + LP        K      H K +L+LA+S DG+YL SGG D+L+ VWD      +E F XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  N +DS  KERVV+ GRDR+VR+WK+ E++ LVF     G +DCV+MI                 F  +KKP  +   AHG       +WI+SV+ + ++DLV SGS+DG +RLW+ADL+ER+L  VA++P+ G+VN L   +  +F +A +G+EHRLGRWE +KG +N + ++ LP  D     E +S  +E
Sbjct:  129 VAGLYEDFEFDADSTKFLPGHRLPVTSVALAEDGKTAFSASKDGAILRWNLAEQTKLRLTLPADDVATASK-----DHEKNILALALSSDGKYLVSGGCDKLVRVWDAEKKELLESFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVNGLDSLYKERVVSCGRDRSVRMWKIPEETQLVFYG-NSGSMDCVKMINDEYYVTGGDDGSLSLWFNGRKKPVYVVPKAHGG------KWISSVTVMPRTDLVASGSSDGFIRLWKADLKERTLMPVATIPIQGYVNALVFDNKTRFLLAGIGQEHRLGRWERIKGVKNGLALIALPNVDEENESEDESEDDE 474          
BLAST of mRNA_H-elongata_contig8072.15722.1 vs. uniprot
Match: A0A662XPF7_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XPF7_9STRA)

HSP 1 Score: 216 bits (551), Expect = 1.890e-62
Identity = 152/338 (44.97%), Postives = 204/338 (60.36%), Query Frame = 1
Query:   25 QIPTSGMRRMRGHRLTPTCVALSPDDASAFSGSKDNSIVRWDV--ETGTRFTMLPQWRRVNKGKVSDVNAHNKEVLSLAVSGDGRYLASGGRDRLINVWDCRTNTTVEIFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAIDSWRKERVVTGGRDRTVRLWKVLEDSHLVFRPVGGGGIDCVRMIXXXXXXXXXXXXXXXXXFAMKKKPAVLASAAHGQGPAGVPRWITSVSCLKQSDLVISGSNDGLVRLWRADLEERSLQQVASVPLTGFVNGLAVSSTGKFFVAAVGKEHRLGRWESLKGARNEVCVVPLPTED 1032
            +  T   + ++GHRL  T + L  D  +AFS +KD S++RWD+  +  TR + LP+     +   +D     + VL+LAVS DG+YLASGGRD+L++VWD   N   E F                    XXXXXXXXXXXXXXXXXXXXXXXXX    N +DS  KERVV+ GRDR+VR+WK+ E++ LVF     G +DCV+M+                 F  +KKP  + + AHG       +WI+SV+ L ++DLV SGS+DG +RLW+ADL ERSL  VA++PL G+VN L      +F +A VG+EHRLGRWE LK  +N + +V LP+ D
Sbjct:  138 EFDTDSTKFLKGHRLPVTSLCLLEDGKTAFSAAKDGSLLRWDLAAQKKTRLS-LPKDDIAAETATTD---KQRCVLALAVSSDGKYLASGGRDKLVHVWDVEKNELQESFSGHRDAISALAFRLRSHSLFXXXXXXXXXXXXXXXXXXXXXXXXXQGEVNGLDSLYKERVVSCGRDRSVRMWKIPEETQLVFYG-NSGSMDCVKMVTDEYYVTGGDDGSLSLWFNGRKKPVCVIANAHGG------KWISSVAVLPRTDLVASGSSDGFIRLWQADLHERSLTPVATIPLEGYVNALCFDLKARFLLAGVGQEHRLGRWEKLKKVKNGIAIVALPSID 464          
BLAST of mRNA_H-elongata_contig8072.15722.1 vs. uniprot
Match: A0A6G0XP95_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP95_9STRA)

HSP 1 Score: 211 bits (538), Expect = 9.540e-61
Identity = 175/349 (50.14%), Postives = 221/349 (63.32%), Query Frame = 1
Query:    1 VAKGLKDRQIPTSGMRRMRGHRLTPTCVALSPDDASAFSGSKDNSIVRWDVE----TGTRFTMLPQWRRVNKGKVSDVNAHNKEVLSLAVSGDGRYLASGGRDRLINVWDCRTNTTVEIFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAIDSWRKERVVTGGRDRTVRLWKVLEDSHLVFRPVGGGGIDCVRMIXXXXXXXXXXXXXXXXXFAMKKKPAVLASAAHGQGPAGVPRWITSVSCLKQSDLVISGSNDGLVRLWRADLEERSLQQVASVPL-TGFVNGLAVSSTGKFFVAAVGKEHRLGRWESLKGARNEVCVVPLPTED 1032
            VA  L   +      + ++GH +T TCV  S D    +S +KD SI++W +     T T+F         NK     V  H K VL+LA+S D +YLASGG D+++ VW+  +N  +E F+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+D  +K+RVV+ GRD +VRLWK+ E++ LVF   G G IDC+ MI                 F  KKKP     AAHG        WITSV+ L ++DL+ SGS+DG VRLW+A+L+ RSL+ V +VP+  GFVN LA    G F VA VGKEHRLGRW+  K  +N V ++ LP+ D
Sbjct:  121 VADKLASFEFDEESSKFLKGHNVTVTCVCTSEDGRLIYSAAKDGSILKWSITSDGVTKTKFIAPVDEDNDNKKPTKAVPDHKKTVLALALSSDNKYLASGGVDKILRVWNGESNECIESFKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAVDCLQKDRVVSVGRDASVRLWKIPEETQLVFH--GTGSIDCLAMINDEYYVTGDDSGSLVLWFNAKKKPTFTQRAAHGGA------WITSVAVLPRTDLIASGSSDGFVRLWKANLKVRSLEAVGAVPVGEGFVNSLAFPKDGGFLVAGVGKEHRLGRWDVKKQGKNGVVLIALPSLD 461          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8072.15722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPV1_ECTSI5.390e-11970.19Similar to U3 small nucleolar RNA interacting prot... [more]
A0A6H5KZR0_9PHAE3.190e-9355.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YCM4_HETAK2.240e-6943.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z4V0_9STRA7.850e-6942.51WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A8K1FMR6_PYTOL3.280e-6750.88Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XNE3_9STRA2.190e-6648.84Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
W7U1Y2_9STRA1.330e-6347.30U3 small nucleolar rna-interacting protein 2 n=2 T... [more]
K3X8R7_GLOUD1.390e-6248.04Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662XPF7_9STRA1.890e-6244.97Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A6G0XP95_9STRA9.540e-6150.14Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8072contigH-elongata_contig8072:7465..9900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score363.6
Seed ortholog evalue1.1e-97
Seed eggNOG ortholog2880.D7FPV1
KEGG koko:K14793
GOsGO:0000003,GO:0000151,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007154,GO:0007275,GO:0008037,GO:0008150,GO:0008152,GO:0009553,GO:0009790,GO:0009791,GO:0009793,GO:0009856,GO:0009875,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016072,GO:0022414,GO:0022613,GO:0030515,GO:0030684,GO:0031428,GO:0031461,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044706,GO:0046483,GO:0048229,GO:0048316,GO:0048544,GO:0048608,GO:0048731,GO:0048856,GO:0051704,GO:0060321,GO:0061458,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.snoRNA binding
EggNOG OGsKOG0299@1,KOG0299@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionsimilar to U3 small nucleolar RNA interacting protein 2
Ec32 orthologEc-18_001780.1
Exons6
Model size1107
Cds size1107
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8072.15722.1prot_H-elongata_contig8072.15722.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8072 7465..9900 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931212.663855-CDS-H-elongata_contig8072:7464..77011622931212.663855-CDS-H-elongata_contig8072:7464..7701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8072 7465..7701 -
1691679743.8943455-CDS-H-elongata_contig8072:7464..77011691679743.8943455-CDS-H-elongata_contig8072:7464..7701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8072 7465..7701 -
1622931212.6791565-CDS-H-elongata_contig8072:8071..83121622931212.6791565-CDS-H-elongata_contig8072:8071..8312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8072 8072..8312 -
1691679743.9057028-CDS-H-elongata_contig8072:8071..83121691679743.9057028-CDS-H-elongata_contig8072:8071..8312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8072 8072..8312 -
1622931212.6971362-CDS-H-elongata_contig8072:8555..86321622931212.6971362-CDS-H-elongata_contig8072:8555..8632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8072 8556..8632 -
1691679743.9144902-CDS-H-elongata_contig8072:8555..86321691679743.9144902-CDS-H-elongata_contig8072:8555..8632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8072 8556..8632 -
1622931212.7157817-CDS-H-elongata_contig8072:8908..90251622931212.7157817-CDS-H-elongata_contig8072:8908..9025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8072 8909..9025 -
1691679743.9265187-CDS-H-elongata_contig8072:8908..90251691679743.9265187-CDS-H-elongata_contig8072:8908..9025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8072 8909..9025 -
1622931212.730369-CDS-H-elongata_contig8072:9196..93911622931212.730369-CDS-H-elongata_contig8072:9196..9391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8072 9197..9391 -
1691679743.936445-CDS-H-elongata_contig8072:9196..93911691679743.936445-CDS-H-elongata_contig8072:9196..9391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8072 9197..9391 -
1622931212.7443235-CDS-H-elongata_contig8072:9660..99001622931212.7443235-CDS-H-elongata_contig8072:9660..9900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8072 9661..9900 -
1691679743.945902-CDS-H-elongata_contig8072:9660..99001691679743.945902-CDS-H-elongata_contig8072:9660..9900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8072 9661..9900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8072.15722.1

>prot_H-elongata_contig8072.15722.1 ID=prot_H-elongata_contig8072.15722.1|Name=mRNA_H-elongata_contig8072.15722.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=369bp
VAKGLKDRQIPTSGMRRMRGHRLTPTCVALSPDDASAFSGSKDNSIVRWD
VETGTRFTMLPQWRRVNKGKVSDVNAHNKEVLSLAVSGDGRYLASGGRDR
LINVWDCRTNTTVEIFRGHQDSVSSLAFRRNSLALFSGSHDRCIKHWDLN
EMGYVETMYGHQSEVNAIDSWRKERVVTGGRDRTVRLWKVLEDSHLVFRP
VGGGGIDCVRMINEDWFVTGGDDGNLALWFAMKKKPAVLASAAHGQGPAG
VPRWITSVSCLKQSDLVISGSNDGLVRLWRADLEERSLQQVASVPLTGFV
NGLAVSSTGKFFVAAVGKEHRLGRWESLKGARNEVCVVPLPTEDVSVTVE
SKSAMEEDAVDVDGKEVE*
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mRNA from alignment at H-elongata_contig8072:7465..9900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8072.15722.1 ID=mRNA_H-elongata_contig8072.15722.1|Name=mRNA_H-elongata_contig8072.15722.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2436bp|location=Sequence derived from alignment at H-elongata_contig8072:7465..9900- (Himanthalia elongata Himel1 dioecious)
GTGGCGAAAGGCCTCAAGGATCGACAGATCCCCACGTCGGGCATGCGGCG CATGCGCGGGCACAGGCTGACCCCGACATGCGTGGCCTTGTCACCCGACG ACGCCTCGGCCTTCTCGGGCAGCAAGGACAACTCGATTGTGCGGTGGGAC GTCGAGACTGGCACCCGCTTTACGATGCTCCCGCAATGGCGCAGAGTCAA CAAGGGCAAGGTCTCCGATGTCAATGCCCACAACAAAGAGGTGCGCACAA TGCATTGAGTGTGTAGACACGGGATGTTTGAAAGTTTATTGAAGCCCTTG TGGCGAGGATAATAGTTTATACCTGTCCTTTTCCCTTTTTTTCCTGGCCC CTGCTTCAACCCGATGTTTTTTTCCCTTCAGTTCAAGCCTTTCGCGTTTT GATGCGCCTTTTGTCATAAGACTCGAGAATGGTTCTTCTCTCTCGACGGA GCCACTTCCTATGGGGAGCTGCATTTTTTTTCATCGTCTATCTCACACAC ATTTGTCAGGTGCTGTCCCTGGCGGTGAGCGGCGACGGTCGATACCTAGC CTCCGGAGGACGCGATCGACTAATCAACGTGTGGGACTGCCGCACCAACA CGACGGTGGAGATATTCCGTGGCCATCAGGACTCTGTCTCGTCTCTAGCT TTCCGTCGAAACAGCCTCGCGCTATTCTCTGGCTCTCACGACCGATGTAT CAAGGTACAGTACTGCAAACAGTGATAATCGTCGTCACCCTCCTATTGTG TGGTGTACATTTCGAAGCGTTGTTGATTGAAACGATTTTTTTCAAAATCT TACACGGTCTACCTCGGCTCTCTCTCCCCCCCATCCCACACACATCCTCC CTCTATATAACGCACGTACGCGCAGCACTGGGATCTCAACGAGATGGGGT ACGTCGAGACCATGTATGGTCACCAGTCGGAGGTCAACGCGATCGATTCC TGGCGCAAAGAACGTGTTGTTACTGGAGGGCGTGACCGTACGGTGTGTTC CTTGAGCAGGAGGCGTCGCCGCTTCGGGGCTCTTACCAATTATCTGACTG ACTGACTTCGGGGCTCTGCCTGCCATCGAAGTATTTGTTCCCGGGTAACG TAGTAGTCGTAGTAGTCTTATTTTGTTCAGTGCTGTACGTAACGAGCGAG CTCTTCCTCCTCTGCAACCAATGAGGCCATCATTAGCTCACTCTCCTCAG CTTCGCGTGGATGATGGAAGCGATAAGCCTTGTACCTTTTGCGACAAACT CTGTCTCGTGGAAAATAGGTCCGGCTCTGGAAGGTCCTAGAGGACAGCCA TCTCGTGTTCCGGCCTGTCGGAGGTGGCGGCATTGACTGCGTCAGGTACC AACCACACCGACGTTGCTCCGGCACGCAGGGGGCAAAAATATTTTGTCAT TGCGGACTGCCCTCGTTCGTTGATATGCAGCAGTGCTAAACGGCCTAATG CCGGTTTTGCGTTTTTCTTCCTATAAACATCTTGAGTACATATATTATGT TTCCCGGAGATGGCGGCATCCTTGCATTGCATTGCATGCCCTGCATGCCC AACCACTTCCTGTCTTCCTGCCTCTAAACCATGCCTAGGATGATCAACGA AGATTGGTTTGTTACTGGCGGCGATGACGGGAATCTGGCGCTGTGGTTTG CCATGAAGAAAAAGCCGGCCGTCCTCGCCTCGGCGGCGCACGGTCAAGGT CCGGCGGGCGTTCCGCGGTGGATCACTTCGGTTAGCTGCCTCAAGCAATC GGACCTCGTAATCAGCGGGTCGAACGACGGTCTGGTGCGACTCTGGAGAG CAGACTTAGAGGAGAGGTCTCTACAGCAAGTAAGTACTGCACTCTCTTGT TTCTGCGTGTAGGAAATTCGAGGTCTTGGGCGCGAAAGCGCTTGCCACGC GGACTGTCTGGATGCATATAGAAATGGTGCCATTAATGGTGATTGAATCA GCAGTCATATTACACCTTCAATTTTGCAGGAACCAGTAGGTTCCTGTTTG TGGTGCTCAAAATGTGCGCGGTGGGGAGGGGGTGTACGCTTCCGGTACAC TCTGGTCTGATTGTTGGCAAATTGCGCACCCAGTGCAATAATATCATCGC ATAGGATCAAGGTGTCCGCAATGTGTAATCGCTTTCTCCAGCATGTATGT GTGAGGGAGGAGTAAATATCATCCGTCGTTTGTCTCTCGCTGTTCTAAGG TGGCGTCTGTACCTCTTACGGGTTTCGTAAACGGTCTGGCGGTATCTTCC ACGGGAAAGTTCTTCGTGGCTGCGGTGGGGAAGGAGCACCGGTTGGGCCG ATGGGAGAGCCTCAAGGGGGCGCGAAACGAGGTGTGCGTAGTGCCACTAC CGACAGAGGATGTGTCAGTTACCGTGGAATCAAAGAGCGCGATGGAAGAA GATGCAGTAGACGTTGATGGGAAGGAGGTCGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig8072:7465..9900-

>mRNA_H-elongata_contig8072.15722.1 ID=mRNA_H-elongata_contig8072.15722.1|Name=mRNA_H-elongata_contig8072.15722.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2214bp|location=Sequence derived from alignment at H-elongata_contig8072:7465..9900- (Himanthalia elongata Himel1 dioecious)
GTGGCGAAAGGCCTCAAGGATCGACAGATCCCCACGTCGGGCATGCGGCG
CATGCGCGGGCACAGGCTGACCCCGACATGCGTGGCCTTGTCACCCGACG
ACGCCTCGGCCTTCTCGGGCAGCAAGGACAACTCGATTGTGCGGTGGGAC
GTCGAGACTGGCACCCGCTTTACGATGCTCCCGCAATGGCGCAGAGTCAA
CAAGGGCAAGGTCTCCGATGTCAATGCCCACAACAAAGAGGTGGCGAAAG
GCCTCAAGGATCGACAGATCCCCACGTCGGGCATGCGGCGCATGCGCGGG
CACAGGCTGACCCCGACATGCGTGGCCTTGTCACCCGACGACGCCTCGGC
CTTCTCGGGCAGCAAGGACAACTCGATTGTGCGGTGGGACGTCGAGACTG
GCACCCGCTTTACGATGCTCCCGCAATGGCGCAGAGTCAACAAGGGCAAG
GTCTCCGATGTCAATGCCCACAACAAAGAGGTGCTGTCCCTGGCGGTGAG
CGGCGACGGTCGATACCTAGCCTCCGGAGGACGCGATCGACTAATCAACG
TGTGGGACTGCCGCACCAACACGACGGTGGAGATATTCCGTGGCCATCAG
GACTCTGTCTCGTCTCTAGCTTTCCGTCGAAACAGCCTCGCGCTATTCTC
TGGCTCTCACGACCGATGTATCAAGGTGCTGTCCCTGGCGGTGAGCGGCG
ACGGTCGATACCTAGCCTCCGGAGGACGCGATCGACTAATCAACGTGTGG
GACTGCCGCACCAACACGACGGTGGAGATATTCCGTGGCCATCAGGACTC
TGTCTCGTCTCTAGCTTTCCGTCGAAACAGCCTCGCGCTATTCTCTGGCT
CTCACGACCGATGTATCAAGCACTGGGATCTCAACGAGATGGGGTACGTC
GAGACCATGTATGGTCACCAGTCGGAGGTCAACGCGATCGATTCCTGGCG
CAAAGAACGTGTTGTTACTGGAGGGCGTGACCGTACGCACTGGGATCTCA
ACGAGATGGGGTACGTCGAGACCATGTATGGTCACCAGTCGGAGGTCAAC
GCGATCGATTCCTGGCGCAAAGAACGTGTTGTTACTGGAGGGCGTGACCG
TACGGTCCGGCTCTGGAAGGTCCTAGAGGACAGCCATCTCGTGTTCCGGC
CTGTCGGAGGTGGCGGCATTGACTGCGTCAGGTCCGGCTCTGGAAGGTCC
TAGAGGACAGCCATCTCGTGTTCCGGCCTGTCGGAGGTGGCGGCATTGAC
TGCGTCAGGATGATCAACGAAGATTGGTTTGTTACTGGCGGCGATGACGG
GAATCTGGCGCTGTGGTTTGCCATGAAGAAAAAGCCGGCCGTCCTCGCCT
CGGCGGCGCACGGTCAAGGTCCGGCGGGCGTTCCGCGGTGGATCACTTCG
GTTAGCTGCCTCAAGCAATCGGACCTCGTAATCAGCGGGTCGAACGACGG
TCTGGTGCGACTCTGGAGAGCAGACTTAGAGGAGAGGTCTCTACAGCAAG
ATGATCAACGAAGATTGGTTTGTTACTGGCGGCGATGACGGGAATCTGGC
GCTGTGGTTTGCCATGAAGAAAAAGCCGGCCGTCCTCGCCTCGGCGGCGC
ACGGTCAAGGTCCGGCGGGCGTTCCGCGGTGGATCACTTCGGTTAGCTGC
CTCAAGCAATCGGACCTCGTAATCAGCGGGTCGAACGACGGTCTGGTGCG
ACTCTGGAGAGCAGACTTAGAGGAGAGGTCTCTACAGCAAGTGGCGTCTG
TACCTCTTACGGGTTTCGTAAACGGTCTGGCGGTATCTTCCACGGGAAAG
TTCTTCGTGGCTGCGGTGGGGAAGGAGCACCGGTTGGGCCGATGGGAGAG
CCTCAAGGGGGCGCGAAACGAGGTGTGCGTAGTGCCACTACCGACAGAGG
ATGTGTCAGTTACCGTGGAATCAAAGAGCGCGATGGAAGAAGATGCAGTA
GACGTTGATGGGAAGGAGGTCGAGTAGGTGGCGTCTGTACCTCTTACGGG
TTTCGTAAACGGTCTGGCGGTATCTTCCACGGGAAAGTTCTTCGTGGCTG
CGGTGGGGAAGGAGCACCGGTTGGGCCGATGGGAGAGCCTCAAGGGGGCG
CGAAACGAGGTGTGCGTAGTGCCACTACCGACAGAGGATGTGTCAGTTAC
CGTGGAATCAAAGAGCGCGATGGAAGAAGATGCAGTAGACGTTGATGGGA
AGGAGGTCGAGTAG
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