mRNA_H-elongata_contig807.15720.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig807.15720.1
Unique NamemRNA_H-elongata_contig807.15720.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.470e-18
Identity = 49/85 (57.65%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 DAPPLLDALAEWARMVRESRGPP----------PSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
            DAPPLL+ALAE+ +   E R              +AA L+GPEGGFD +EI  L   P VRFVSLG TVLRAETAA+YALS WSA
Sbjct:  212 DAPPLLEALAEYEQAFSEQRRQDHVNSSDDNRNANAAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYALSSWSA 296          
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.670e-18
Identity = 49/85 (57.65%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 DAPPLLDALAEWARMVRESRGPP----------PSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
            DAPPLL+ALAE+ +   E R              +AA L+GPEGGFD +EI  L   P VRFVSLG TVLRAETAA+YALS WSA
Sbjct:  386 DAPPLLEALAEYEQAFSEERRQDHVNSSDGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYALSSWSA 470          
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A835ZHN8_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.360e-14
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    4 APPLLDALA--EWARMVRESRGPPPSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWS 222
            +PPLL+ALA    AR V  S  P   AA LVGPEGGF  +E  +L   P ++ VSLG TVLRAETAA+YALSC+S
Sbjct:  167 SPPLLEALAAASAARGVPSSAAP---AAFLVGPEGGFSADEREMLAGLPWIQGVSLGATVLRAETAALYALSCYS 238          
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A349TWW5_9PROT (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A349TWW5_9PROT)

HSP 1 Score: 72.8 bits (177), Expect = 1.000e-13
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query:    1 DAPPLLDALAEWARMVRESRGPPPSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
            +A P +D  + WAR       P    A+LVGPEGGF +EE+  L + P V F+ LGP +LRAETAAI ALS W A
Sbjct:  175 NARPAMDVFSGWARE------PAHPTAILVGPEGGFAKEELEYLASLPFVHFIGLGPRILRAETAAITALSLWQA 243          
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A143DD91_9PROT (Ribosomal RNA small subunit methyltransferase E n=4 Tax=Haematospirillum TaxID=1804663 RepID=A0A143DD91_9PROT)

HSP 1 Score: 69.7 bits (169), Expect = 1.370e-12
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   43 MVRESRGPPPSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
            + RE+ GP   AA L GPEGGFD  E  LL  +P VR VSLGP +LRAETAA+ +L+CW A
Sbjct:  183 LAREASGP---AAFLTGPEGGFDPRETELLHQAPFVRPVSLGPRILRAETAAMASLTCWQA 240          
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A178MU09_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Magnetospirillum marisnigri TaxID=1285242 RepID=A0A178MU09_9PROT)

HSP 1 Score: 69.3 bits (168), Expect = 1.780e-12
Identity = 43/86 (50.00%), Postives = 48/86 (55.81%), Query Frame = 1
Query:    1 DAPPLLDALAEWAR-----MVRESRG--------PPPSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCW 219
            D  PL   L +W        + ES G        PP  AALLVGPEGGFD EE  LL + P  R V LGP +LRAETAAI AL+ W
Sbjct:  149 DPAPLDKVLGQWPEGRVLLYLDESGGGVPLAQAIPPGPAALLVGPEGGFDDEERRLLASKPFARPVGLGPRILRAETAAIAALAVW 234          
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A1H4DH21_9RHOB (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rubrimonas cliftonensis TaxID=89524 RepID=A0A1H4DH21_9RHOB)

HSP 1 Score: 68.2 bits (165), Expect = 5.130e-12
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:    1 DAPPLLDALAEWARMVRESRGPPPSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
            DAPP +DAL    R      GP    A+L+GPEGGF  EE   L+ +P V  VSLGP VLRA+TAA+ AL+ W A
Sbjct:  174 DAPPAMDALRAAGREAGSGPGP---WAVLIGPEGGFAPEERARLSEAPFVTRVSLGPRVLRADTAAVAALALWQA 245          
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A522WDR9_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Magnetospirillum sp. TaxID=31872 RepID=A0A522WDR9_9PROT)

HSP 1 Score: 66.6 bits (161), Expect = 1.830e-11
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 1
Query:   79 ALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
            ALLVGPEGGFD EE  +L A P  R VSLGP +LRAETAAI AL+ W A
Sbjct:  188 ALLVGPEGGFDPEERRMLAAKPYTRPVSLGPRILRAETAAIAALAVWQA 236          
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A364NX95_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Magnetospirillum kuznetsovii TaxID=2053833 RepID=A0A364NX95_9PROT)

HSP 1 Score: 66.6 bits (161), Expect = 1.830e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   76 AALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
            AALLVGPEGGFD +E  LL + P VR V LGP +LRAETAAI AL+ W A
Sbjct:  187 AALLVGPEGGFDPDERRLLLSKPFVRPVGLGPRILRAETAAIAALAIWQA 236          
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A6N7AJ31_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N7AJ31_9PROT)

HSP 1 Score: 65.9 bits (159), Expect = 3.370e-11
Identity = 41/91 (45.05%), Postives = 47/91 (51.65%), Query Frame = 1
Query:   10 PLLDALAEWAR-------------------MVRESRGPPPSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
            PL  ALA+W                     M R   GP    ALLVGPEGGF + E+ LL   P    VSLGP +LRAETAA+ AL+CW A
Sbjct:  148 PLGTALADWPEGRRLIVCDESGGGETIADAMTRFGSGP---VALLVGPEGGFAKTELDLLRILPFATTVSLGPRILRAETAALAALACWQA 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8G1_ECTSI1.470e-1857.6516S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A6H5K9Y9_9PHAE4.670e-1857.6516S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A835ZHN8_9STRA3.360e-1458.6716S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A349TWW5_9PROT1.000e-1350.67Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A143DD91_9PROT1.370e-1259.02Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A178MU09_9PROT1.780e-1250.00Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A1H4DH21_9RHOB5.130e-1252.00Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A522WDR9_9PROT1.830e-1169.39Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A364NX95_9PROT1.830e-1168.00Ribosomal RNA small subunit methyltransferase E n=... [more]
A0A6N7AJ31_9PROT3.370e-1145.05Ribosomal RNA small subunit methyltransferase E n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig807contigH-elongata_contig807:18732..18956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue5.2e-15
Seed eggNOG ortholog2880.D7G8G1
EggNOG free text desc.RNA methyltransferase
EggNOG OGs2SA8N@2759,COG1385@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931212.5227504-CDS-H-elongata_contig807:18731..189561622931212.5227504-CDS-H-elongata_contig807:18731..18956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig807 18732..18956 -
1691679743.859835-CDS-H-elongata_contig807:18731..189561691679743.859835-CDS-H-elongata_contig807:18731..18956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig807 18732..18956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig807.15720.1prot_H-elongata_contig807.15720.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig807 18732..18956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig807.15720.1

>prot_H-elongata_contig807.15720.1 ID=prot_H-elongata_contig807.15720.1|Name=mRNA_H-elongata_contig807.15720.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
DAPPLLDALAEWARMVRESRGPPPSAALLVGPEGGFDREEIHLLTASPIV
RFVSLGPTVLRAETAAIYALSCWSA
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mRNA from alignment at H-elongata_contig807:18732..18956-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig807.15720.1 ID=mRNA_H-elongata_contig807.15720.1|Name=mRNA_H-elongata_contig807.15720.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig807:18732..18956- (Himanthalia elongata Himel1 dioecious)
GACGCCCCGCCTCTGCTGGATGCGCTTGCTGAGTGGGCTCGAATGGTACG AGAAAGTAGGGGTCCACCTCCCAGCGCTGCCTTGTTGGTGGGCCCCGAGG GAGGCTTCGACCGAGAGGAGATACATTTATTAACCGCTTCCCCAATCGTC CGCTTTGTTTCTTTAGGGCCTACAGTCTTACGCGCCGAAACGGCTGCTAT TTATGCCTTGAGTTGCTGGAGCGCA
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Coding sequence (CDS) from alignment at H-elongata_contig807:18732..18956-

>mRNA_H-elongata_contig807.15720.1 ID=mRNA_H-elongata_contig807.15720.1|Name=mRNA_H-elongata_contig807.15720.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig807:18732..18956- (Himanthalia elongata Himel1 dioecious)
GACGCCCCGCCTCTGCTGGATGCGCTTGCTGAGTGGGCTCGAATGGTACG
AGAAAGTAGGGGTCCACCTCCCAGCGCTGCCTTGTTGGTGGGCCCCGAGG
GAGGCTTCGACCGAGAGGAGATACATTTATTAACCGCTTCCCCAATCGTC
CGCTTTGTTTCTTTAGGGCCTACAGTCTTACGCGCCGAAACGGCTGCTAT
TTATGCCTTGAGTTGCTGGAGCGCAGACGCCCCGCCTCTGCTGGATGCGC
TTGCTGAGTGGGCTCGAATGGTACGAGAAAGTAGGGGTCCACCTCCCAGC
GCTGCCTTGTTGGTGGGCCCCGAGGGAGGCTTCGACCGAGAGGAGATACA
TTTATTAACCGCTTCCCCAATCGTCCGCTTTGTTTCTTTAGGGCCTACAG
TCTTACGCGCCGAAACGGCTGCTATTTATGCCTTGAGTTGCTGGAGCGCA
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