mRNA_H-elongata_contig807.15720.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 1.470e-18 Identity = 49/85 (57.65%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 1 DAPPLLDALAEWARMVRESRGPP----------PSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
DAPPLL+ALAE+ + E R +AA L+GPEGGFD +EI L P VRFVSLG TVLRAETAA+YALS WSA
Sbjct: 212 DAPPLLEALAEYEQAFSEQRRQDHVNSSDDNRNANAAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYALSSWSA 296
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 4.670e-18 Identity = 49/85 (57.65%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 1 DAPPLLDALAEWARMVRESRGPP----------PSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
DAPPLL+ALAE+ + E R +AA L+GPEGGFD +EI L P VRFVSLG TVLRAETAA+YALS WSA
Sbjct: 386 DAPPLLEALAEYEQAFSEERRQDHVNSSDGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYALSSWSA 470
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A835ZHN8_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN8_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 3.360e-14 Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query: 4 APPLLDALA--EWARMVRESRGPPPSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWS 222
+PPLL+ALA AR V S P AA LVGPEGGF +E +L P ++ VSLG TVLRAETAA+YALSC+S
Sbjct: 167 SPPLLEALAAASAARGVPSSAAP---AAFLVGPEGGFSADEREMLAGLPWIQGVSLGATVLRAETAALYALSCYS 238
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A349TWW5_9PROT (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A349TWW5_9PROT) HSP 1 Score: 72.8 bits (177), Expect = 1.000e-13 Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query: 1 DAPPLLDALAEWARMVRESRGPPPSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
+A P +D + WAR P A+LVGPEGGF +EE+ L + P V F+ LGP +LRAETAAI ALS W A
Sbjct: 175 NARPAMDVFSGWARE------PAHPTAILVGPEGGFAKEELEYLASLPFVHFIGLGPRILRAETAAITALSLWQA 243
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A143DD91_9PROT (Ribosomal RNA small subunit methyltransferase E n=4 Tax=Haematospirillum TaxID=1804663 RepID=A0A143DD91_9PROT) HSP 1 Score: 69.7 bits (169), Expect = 1.370e-12 Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1
Query: 43 MVRESRGPPPSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
+ RE+ GP AA L GPEGGFD E LL +P VR VSLGP +LRAETAA+ +L+CW A
Sbjct: 183 LAREASGP---AAFLTGPEGGFDPRETELLHQAPFVRPVSLGPRILRAETAAMASLTCWQA 240
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A178MU09_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Magnetospirillum marisnigri TaxID=1285242 RepID=A0A178MU09_9PROT) HSP 1 Score: 69.3 bits (168), Expect = 1.780e-12 Identity = 43/86 (50.00%), Postives = 48/86 (55.81%), Query Frame = 1
Query: 1 DAPPLLDALAEWAR-----MVRESRG--------PPPSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCW 219
D PL L +W + ES G PP AALLVGPEGGFD EE LL + P R V LGP +LRAETAAI AL+ W
Sbjct: 149 DPAPLDKVLGQWPEGRVLLYLDESGGGVPLAQAIPPGPAALLVGPEGGFDDEERRLLASKPFARPVGLGPRILRAETAAIAALAVW 234
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A1H4DH21_9RHOB (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rubrimonas cliftonensis TaxID=89524 RepID=A0A1H4DH21_9RHOB) HSP 1 Score: 68.2 bits (165), Expect = 5.130e-12 Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query: 1 DAPPLLDALAEWARMVRESRGPPPSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
DAPP +DAL R GP A+L+GPEGGF EE L+ +P V VSLGP VLRA+TAA+ AL+ W A
Sbjct: 174 DAPPAMDALRAAGREAGSGPGP---WAVLIGPEGGFAPEERARLSEAPFVTRVSLGPRVLRADTAAVAALALWQA 245
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A522WDR9_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Magnetospirillum sp. TaxID=31872 RepID=A0A522WDR9_9PROT) HSP 1 Score: 66.6 bits (161), Expect = 1.830e-11 Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 1
Query: 79 ALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
ALLVGPEGGFD EE +L A P R VSLGP +LRAETAAI AL+ W A
Sbjct: 188 ALLVGPEGGFDPEERRMLAAKPYTRPVSLGPRILRAETAAIAALAVWQA 236
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A364NX95_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Magnetospirillum kuznetsovii TaxID=2053833 RepID=A0A364NX95_9PROT) HSP 1 Score: 66.6 bits (161), Expect = 1.830e-11 Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query: 76 AALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
AALLVGPEGGFD +E LL + P VR V LGP +LRAETAAI AL+ W A
Sbjct: 187 AALLVGPEGGFDPDERRLLLSKPFVRPVGLGPRILRAETAAIAALAIWQA 236
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Match: A0A6N7AJ31_9PROT (Ribosomal RNA small subunit methyltransferase E n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N7AJ31_9PROT) HSP 1 Score: 65.9 bits (159), Expect = 3.370e-11 Identity = 41/91 (45.05%), Postives = 47/91 (51.65%), Query Frame = 1
Query: 10 PLLDALAEWAR-------------------MVRESRGPPPSAALLVGPEGGFDREEIHLLTASPIVRFVSLGPTVLRAETAAIYALSCWSA 225
PL ALA+W M R GP ALLVGPEGGF + E+ LL P VSLGP +LRAETAA+ AL+CW A
Sbjct: 148 PLGTALADWPEGRRLIVCDESGGGETIADAMTRFGSGP---VALLVGPEGGFAKTELDLLRILPFATTVSLGPRILRAETAALAALACWQA 235 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig807.15720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig807.15720.1 >prot_H-elongata_contig807.15720.1 ID=prot_H-elongata_contig807.15720.1|Name=mRNA_H-elongata_contig807.15720.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp DAPPLLDALAEWARMVRESRGPPPSAALLVGPEGGFDREEIHLLTASPIVback to top mRNA from alignment at H-elongata_contig807:18732..18956- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig807.15720.1 ID=mRNA_H-elongata_contig807.15720.1|Name=mRNA_H-elongata_contig807.15720.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at H-elongata_contig807:18732..18956- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig807:18732..18956- >mRNA_H-elongata_contig807.15720.1 ID=mRNA_H-elongata_contig807.15720.1|Name=mRNA_H-elongata_contig807.15720.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig807:18732..18956- (Himanthalia elongata Himel1 dioecious)back to top |