mRNA_H-elongata_contig807.15718.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig807.15718.1
Unique NamemRNA_H-elongata_contig807.15718.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig807.15718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig807contigH-elongata_contig807:6014..8403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size435
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig807.15718.1prot_H-elongata_contig807.15718.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig807 8092..8403 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931212.1663945-UTR-H-elongata_contig807:6013..61321622931212.1663945-UTR-H-elongata_contig807:6013..6132Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig807 6014..6132 +
1691679743.6500652-UTR-H-elongata_contig807:6013..61321691679743.6500652-UTR-H-elongata_contig807:6013..6132Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig807 6014..6132 +
1622931212.1903815-UTR-H-elongata_contig807:8088..80911622931212.1903815-UTR-H-elongata_contig807:8088..8091Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig807 8089..8091 +
1691679743.6606693-UTR-H-elongata_contig807:8088..80911691679743.6606693-UTR-H-elongata_contig807:8088..8091Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig807 8089..8091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931212.208302-CDS-H-elongata_contig807:8091..84031622931212.208302-CDS-H-elongata_contig807:8091..8403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig807 8092..8403 +
1691679743.6713345-CDS-H-elongata_contig807:8091..84031691679743.6713345-CDS-H-elongata_contig807:8091..8403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig807 8092..8403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig807.15718.1

>prot_H-elongata_contig807.15718.1 ID=prot_H-elongata_contig807.15718.1|Name=mRNA_H-elongata_contig807.15718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MDGQQNPPVFATPKIEFDGSIVKREDAQAESEKDANTRKTAYRTGLRDGW
SCLPVSTASVDTPSTGDRVSSEIALFAAESKPSVLEMKLLTSGTVGTASE
GRKY
back to top

mRNA from alignment at H-elongata_contig807:6014..8403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig807.15718.1 ID=mRNA_H-elongata_contig807.15718.1|Name=mRNA_H-elongata_contig807.15718.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2390bp|location=Sequence derived from alignment at H-elongata_contig807:6014..8403+ (Himanthalia elongata Himel1 dioecious)
CGGTTCGTTTTGCATAGAACGACAAGGCAGAGATCCTGTTGTCTACATCC
AGTTTTGAGCTTTGGAGGTGTCCACGTCCGTCTGTAAAAGGTGTCGAGGG
AGTTATTTCGCGAGTTCAGGTGAGATATTGCGCCCGCGCTGTGAACGTGA
TTTCCGTTTCCGTTAAAATCGCACCATATAATTTTCAAAGACGGCTGAAT
CCTTTCAGTTGTACAAACGACAGCACGCGGTAAACTTGTTCGTCTGCCGC
CTCCAATACTGTCGGCACTGTATTGTACATGCCCACCGTACTTGTACCAA
TACAGTATTAGTATTAGTACTGTAGTGGGTGTTGAAAAAGAAAGGCGCAA
AAAAAATGGCCCATGGAGTTACCTGAATAGGCTGCACCCGTTACTCAAGC
TACCTTGAGGACTGCTGGCTCAGTTACGGTGGACTCTCGGTGGTGAACGC
CATCGGTTCACTATTGCGTGACCTGATGAACTCGGGATTGGCCCGATGGC
GGTTGACGGTAGAGATAGAAGCCGCCGCGGAAAACGGGAGGATCCCGGGA
GTACGCACTAGATTCAGCCTGGGTTAGGAGAATGAGCGGGGCTGACGCAG
GACGGGGCAGCCGAACCCGTCTCGCGAGACCAAATTCTCAGACACGAACG
GGGACAGGGGAAATTCGTGTTCAGCTGACCACAAGCAGGAGACAATCTAA
TCCGGTTGATATTTACTCTGCTATATGCAATGACGACTTACAGCACACAC
TTTACACAGCCTGAAGCTTTGAGTGGAGCCGTTAAAGCTTCTGAGGGCAA
TATGATGTGGACAAAAAGGACTAAGTAGATATTTGGGAGCATCCTATCCT
CGTTCCCGGACGCCTCTGATGTACTTACATTGAGCAACCCCCTCTCGCAC
TATTAATTTTACACTCAGCACCGATATATAATCCTTGACGCATGCTCCCC
ACACCTATTGAGGAAAGTCCGCCTTGCTTGGTGGGAAGAAGCACATCATA
TCTAACGGAGGCATTGAATGAGGAAATCGAAACAGCCTGCAAGGGTGCGA
CGTCATCACTTGGCGAGTGCAATGCGGGTAGGGTGATCCTTCATTCTGTA
CACTGTGTTTCGCGAAAACACAAGAGCCATATAAATATCTTATTACAAGA
CGCTTCACACAATACACCTCACTTTAACAGAACCAAATTAGCAACTTGAA
CATCCCCACAATACAACAGCTTTACAAACTCATCCTCCTGAGGCAACTAA
AAAATATTTATCGAGCTATCCCCAGTTGACCCTTAAAGCCAACCAATAAG
CCTCACTGGATCCTTGTACCATTCATCGTTCTGATTGTACCCTCTATCGT
ATGGAGCTAAACATTAAATATATGTCACACTTGTAAGGCATTGGATCAAG
CGGTACCAAAGCGCTATGCTGTCAGCAACGAATGCCAGTTAACTTACTGT
TGCACACGGGCACAACGCCCCTCTTGGTAATAAACTCAGCCACCCGTGAG
ATCAATCAGATTGCAAGCCATTGAGATTAACCTTAAAATGCTGCACTCAA
CAAACAGTTGCTGTATTCATTATTAAACGGAGACAGAAATTGTATTATTC
CTTTTTATCTGTTTGCATTAGACTGCGCAAACCGGCATGACACGTAAGGG
GGCGCCACGCTGGTTTGCAAATACCCCCCCCCCCCTATGGGGAGCTATCC
CTGAAGATATTGGATTGACCTATCCTACTCGCGTTGCTTACGAAACCGCG
CCGGACTACCGCTGAAACTCGCCATCCTGCCCCCGCTGCCTCCTGTTCAG
CTGACCACGAGCAGGAGGTAGCCAAATCCGGTTGGTCCTTACTCTGATGT
TTGTTATGACCACACATGCATAATGCATGGAAGTCTTTTAAATAAAAATA
ATGCATGGAAGTATGTGAACATGTTCTTAGTACTGTATGTGCAAAATGGA
ATTTCGGTCACAATTGCACCGATATTGTTTCAATGTTTATATGATACGAT
CGCCCACTCGCATGGAAATTGAATAACCATTGTTGATTCACATCTCCCTC
TTTCACCATCGTTACCATGGCACAGGTGATGGACGGTCAGCAGAACCCGC
CCGTTTTTGCAACGCCAAAAATTGAGTTTGACGGTTCAATAGTAAAAAGA
GAAGATGCTCAAGCCGAGTCCGAGAAAGACGCAAACACAAGAAAGACTGC
TTACAGGACTGGTTTGCGGGATGGCTGGTCTTGTCTCCCCGTCTCAACCG
CTTCAGTAGATACACCCAGTACTGGGGATCGAGTTTCATCCGAGATTGCT
CTTTTTGCTGCAGAATCTAAACCTTCCGTTTTAGAGATGAAACTGCTTAC
TAGCGGGACCGTGGGTACGGCCTCAGAAGGAAGAAAATAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig807:6014..8403+

>mRNA_H-elongata_contig807.15718.1 ID=mRNA_H-elongata_contig807.15718.1|Name=mRNA_H-elongata_contig807.15718.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig807:6014..8403+ (Himanthalia elongata Himel1 dioecious)
ATGGACGGTCAGCAGAACCCGCCCGTTTTTGCAACGCCAAAAATTGAGTT
TGACGGTTCAATAGTAAAAAGAGAAGATGCTCAAGCCGAGTCCGAGAAAG
ACGCAAACACAAGAAAGACTGCTTACAGGACTGGTTTGCGGGATGGCTGG
TCTTGTCTCCCCGTCTCAACCGCTTCAGTAGATACACCCAGTACTGGGGA
TCGAGTTTCATCCGAGATTGCTCTTTTTGCTGCAGAATCTAAACCTTCCG
TTTTAGAGATGAAACTGCTTACTAGCGGGACCGTGGGTACGGCCTCAGAA
GGAAGAAAATATATGGACGGTCAGCAGAACCCGCCCGTTTTTGCAACGCC
AAAAATTGAGTTTGACGGTTCAATAGTAAAAAGAGAAGATGCTCAAGCCG
AGTCCGAGAAAGACGCAAACACAAGAAAGACTGCTTACAGGACTGGTTTG
CGGGATGGCTGGTCTTGTCTCCCCGTCTCAACCGCTTCAGTAGATACACC
CAGTACTGGGGATCGAGTTTCATCCGAGATTGCTCTTTTTGCTGCAGAAT
CTAAACCTTCCGTTTTAGAGATGAAACTGCTTACTAGCGGGACCGTGGGT
ACGGCCTCAGAAGGAAGAAAATAT
back to top