mRNA_H-elongata_contig80528.15702.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80528.15702.1
Unique NamemRNA_H-elongata_contig80528.15702.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80528.15702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80528contigH-elongata_contig80528:620..922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.6793423-CDS-H-elongata_contig80528:619..9221622931210.6793423-CDS-H-elongata_contig80528:619..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80528 620..922 -
1691679743.0796578-CDS-H-elongata_contig80528:619..9221691679743.0796578-CDS-H-elongata_contig80528:619..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80528 620..922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80528.15702.1prot_H-elongata_contig80528.15702.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80528 620..922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80528.15702.1

>prot_H-elongata_contig80528.15702.1 ID=prot_H-elongata_contig80528.15702.1|Name=mRNA_H-elongata_contig80528.15702.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
NTTNHGDADCRSRLKESDNAHFAHVRSSSVPGICTPWDLPVQDDSDKKPY
ISFSATEVQLATKPANVQEEKERTWPLGPAPTATTEEWSARPWPFTLRAE
P
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mRNA from alignment at H-elongata_contig80528:620..922-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80528.15702.1 ID=mRNA_H-elongata_contig80528.15702.1|Name=mRNA_H-elongata_contig80528.15702.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig80528:620..922- (Himanthalia elongata Himel1 dioecious)
AACACCACTAACCACGGCGACGCCGACTGTCGCTCCAGATTAAAAGAAAG
CGACAACGCCCACTTCGCCCACGTTCGCTCTTCGAGCGTTCCTGGGATCT
GTACCCCGTGGGACCTTCCTGTACAAGACGACTCCGACAAGAAGCCCTAT
ATCTCGTTTTCGGCGACTGAGGTTCAGCTTGCGACTAAGCCCGCCAACGT
CCAAGAGGAGAAGGAGAGGACATGGCCGCTCGGGCCAGCCCCAACAGCAA
CGACGGAAGAGTGGAGCGCTCGCCCATGGCCATTTACTCTACGTGCTGAG
CCG
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Coding sequence (CDS) from alignment at H-elongata_contig80528:620..922-

>mRNA_H-elongata_contig80528.15702.1 ID=mRNA_H-elongata_contig80528.15702.1|Name=mRNA_H-elongata_contig80528.15702.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig80528:620..922- (Himanthalia elongata Himel1 dioecious)
AACACCACTAACCACGGCGACGCCGACTGTCGCTCCAGATTAAAAGAAAG
CGACAACGCCCACTTCGCCCACGTTCGCTCTTCGAGCGTTCCTGGGATCT
GTACCCCGTGGGACCTTCCTGTACAAGACGACTCCGACAAGAAGCCCTAT
ATCTCGTTTTCGGCGACTGAGGTTCAGCTTGCGACTAAGCCCGCCAACGT
CCAAGAGGAGAAGGAGAGGACATGGCCGCTCGGGCCAGCCCCAACAGCAA
CGACGGAAGAGTGGAGCGCTCGCCCATGGCCATTTACTCTACGTGCTGAG
CCGAACACCACTAACCACGGCGACGCCGACTGTCGCTCCAGATTAAAAGA
AAGCGACAACGCCCACTTCGCCCACGTTCGCTCTTCGAGCGTTCCTGGGA
TCTGTACCCCGTGGGACCTTCCTGTACAAGACGACTCCGACAAGAAGCCC
TATATCTCGTTTTCGGCGACTGAGGTTCAGCTTGCGACTAAGCCCGCCAA
CGTCCAAGAGGAGAAGGAGAGGACATGGCCGCTCGGGCCAGCCCCAACAG
CAACGACGGAAGAGTGGAGCGCTCGCCCATGGCCATTTACTCTACGTGCT
GAGCCG
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