mRNA_H-elongata_contig80387.15691.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig80387.15691.1
Unique NamemRNA_H-elongata_contig80387.15691.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig80387.15691.1 vs. uniprot
Match: D7FSY4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY4_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.740e-33
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 1
Query:   16 DFRVVTYNILCSSLAVPDHFPFCEPIDLDATTRLKRVKRKLAKEMANGAVICLQEVSLTWAGELHVFFALKNYAFVTTQYGSRFNDYMG 282
            DFRV TYNILCS LA P  FP C P +LDA TRLKRVK KL  E++ G+VICLQEV + WAG+LHV+F  + YAFVT  YG  FN+Y G
Sbjct:    2 DFRVATYNILCSHLAEPTWFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIQWAGDLHVYFMARGYAFVTAHYGMHFNNYTG 90          
BLAST of mRNA_H-elongata_contig80387.15691.1 vs. uniprot
Match: D7FSY2_ECTSI (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY2_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.000e-32
Identity = 59/92 (64.13%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    7 NPADFRVVTYNILCSSLAVPDHFPFCEPIDLDATTRLKRVKRKLAKEMANGAVICLQEVSLTWAGELHVFFALKNYAFVTTQYGSRFNDYMG 282
            N  DFRV TYNILCS LA P  FP C P +LDA TRLKRVK KL  E++ G+VICLQEV + WAG+LHV+F  + YAFVT  YG  FN+YMG
Sbjct:   51 NKMDFRVATYNILCSHLAEPTRFPQCSPRNLDAPTRLKRVKHKLDAEISKGSVICLQEVGIGWAGDLHVYFMDRGYAFVTAHYGKHFNNYMG 142          
BLAST of mRNA_H-elongata_contig80387.15691.1 vs. uniprot
Match: A0A5J4YQ76_PORPP (Carbon catabolite repressor protein 4-like 4 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQ76_PORPP)

HSP 1 Score: 111 bits (277), Expect = 4.000e-27
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1
Query:   22 RVVTYNILCSSLAVPDHFPFCEPIDLDATTRLKRVKRKLAKEMANGAVICLQEVSLTWAGELHVFFALKNYAFVTTQYGSRFNDYMG 282
            RVVTYN+L  +LA P +FPFC P DL    RL+RVKRKL  E+  GA++CLQEVS +W G LH FF    Y+ +   YGS+FNDYMG
Sbjct:   29 RVVTYNVLSPTLAAPPYFPFCNPDDLVPDVRLERVKRKLLSEIERGAILCLQEVSRSWTGNLHAFFVQHQYSMIVAPYGSKFNDYMG 115          
BLAST of mRNA_H-elongata_contig80387.15691.1 vs. uniprot
Match: A0A7S3BQZ3_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BQZ3_9VIRI)

HSP 1 Score: 104 bits (259), Expect = 4.820e-26
Identity = 49/87 (56.32%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   22 RVVTYNILCSSLAVPDHFPFCEPIDLDATTRLKRVKRKLAKEMANGAVICLQEVSLTWAGELHVFFALKNYAFVTTQYGSRFNDYMG 282
            RV TYN+L  +L  P+HF  C P  LD   RL+RVK KL  E+A G+V+CLQEVS++WAGELH FF  + Y FV T Y   F+DYMG
Sbjct:   54 RVATYNVLSQTLCRPNHFTACAPEALDPEARLERVKEKLEAEVAQGSVLCLQEVSMSWAGELHTFFDKRGYRFVETLYSGPFSDYMG 140          
BLAST of mRNA_H-elongata_contig80387.15691.1 vs. uniprot
Match: A0A7S0IU27_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IU27_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 2.120e-25
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    4 SNPADFRVVTYNILCSSLAVPDHFPFCEPIDLDATTRLKRVKRKLAKEMANGAVICLQEVSLTWAGELHVFFALKNYAFVTTQYGSRFNDYMG 282
            S P   RVVTYN+L SSLA  DHF  C   DLDA+ RL+RVK +L +++A GAVICLQEVS  WAGEL  +F    Y  VT  YG+RFN YMG
Sbjct:   11 SAPTAMRVVTYNVLSSSLAGADHFVACSSDDLDASMRLRRVKSQLDEQLAAGAVICLQEVSSKWAGELTPYFEQHGYTVVTGLYGNRFNGYMG 103          
BLAST of mRNA_H-elongata_contig80387.15691.1 vs. uniprot
Match: C1EEK0_MICCC (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EEK0_MICCC)

HSP 1 Score: 103 bits (258), Expect = 1.050e-24
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    4 SNPADFRVVTYNILCSSLAVPDHFPFCEPIDLDATTRLKRVKRKLAKEMANGAVICLQEVSLTWAGELHVFFALKNYAFVTTQYGSRFNDYMG 282
            S+  D RVVTYN+L SSL  PD+F  C+P DL    RL ++  KL  EMA GAVI LQEVS  WAGELHVFFA + Y  + + YG  FN YMG
Sbjct:    3 SSTHDARVVTYNVLSSSLCEPDYFAHCDPNDLHPPNRLAKLLAKLEPEMAKGAVIGLQEVSQKWAGELHVFFAKRGYHMICSLYGKPFNGYMG 95          
BLAST of mRNA_H-elongata_contig80387.15691.1 vs. uniprot
Match: C1MX28_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MX28_MICPC)

HSP 1 Score: 104 bits (259), Expect = 2.510e-24
Identity = 54/93 (58.06%), Postives = 60/93 (64.52%), Query Frame = 1
Query:    4 SNPADFRVVTYNILCSSLAVPDHFPFCEPIDLDATTRLKRVKRKLAKEMANGAVICLQEVSLTWAGELHVFFALKNYAFVTTQYGSRFNDYMG 282
            S   D RVVTYN+L SSL  P +F  C P DLD  TRLK+   KL  EM  GAVI LQEVS  W GELHVFFA + Y  V++ YG  FN YMG
Sbjct:  108 SETHDARVVTYNVLSSSLCEPTYFTHCAPEDLDPPTRLKKTLVKLEDEMKKGAVIALQEVSQKWTGELHVFFAKRGYHLVSSLYGKPFNGYMG 200          
BLAST of mRNA_H-elongata_contig80387.15691.1 vs. uniprot
Match: A0A7S0MFD4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MFD4_9CRYP)

HSP 1 Score: 99.0 bits (245), Expect = 2.560e-24
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   13 ADFRVVTYNILCSSLAVPDHFPFCEPIDLDATTRLKRVKRKLAKEMANGAVICLQEVSLTWAGELHVFFALKNYAFVTTQYGSRFNDYMG 282
            A+ RVVTYN+L SSLA P ++  C+P DLD   R  R+  K+ +E   GA+ CLQEVSL+WAG LH FFA K Y FV + YG R N YMG
Sbjct:   67 ANVRVVTYNVLSSSLADPLYYTSCKPKDLDPHVRYHRLVSKIEEECQLGAIFCLQEVSLSWAGRLHSFFASKGYHFVFSPYGHRKNGYMG 156          
BLAST of mRNA_H-elongata_contig80387.15691.1 vs. uniprot
Match: A0A7S0T4H4_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T4H4_9CHLO)

HSP 1 Score: 102 bits (253), Expect = 7.000e-24
Identity = 53/89 (59.55%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   16 DFRVVTYNILCSSLAVPDHFPFCEPIDLDATTRLKRVKRKLAKEMANGAVICLQEVSLTWAGELHVFFALKNYAFVTTQYGSRFNDYMG 282
            D RVVTYN+L SSL    +F  C P DLD  TRL RV  KL  E+A GAVI LQEVS  WAG+LHVFFA + Y  V + YG  FN YMG
Sbjct:    8 DARVVTYNVLSSSLCEASYFTHCAPEDLDPPTRLARVLAKLEPEVAAGAVIALQEVSQKWAGDLHVFFAQRGYQLVCSLYGKPFNGYMG 96          
BLAST of mRNA_H-elongata_contig80387.15691.1 vs. uniprot
Match: A0A090M8K0_OSTTA (Endonuclease/exonuclease/phosphatase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M8K0_OSTTA)

HSP 1 Score: 102 bits (253), Expect = 7.180e-24
Identity = 52/90 (57.78%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   13 ADFRVVTYNILCSSLAVPDHFPFCEPIDLDATTRLKRVKRKLAKEMANGAVICLQEVSLTWAGELHVFFALKNYAFVTTQYGSRFNDYMG 282
            A  RVVTYN+L S LA P +F  C+P DL A TRL+RV  KL  E A  AVI LQEVS++WAG LH +FA K Y F+ + YG  FN+YMG
Sbjct:    9 ATARVVTYNVLSSHLADPGYFTHCDPDDLRAETRLERVMAKLDAECAGRAVIGLQEVSMSWAGPLHAYFAKKGYTFILSLYGKPFNNYMG 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig80387.15691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSY4_ECTSI1.740e-3364.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSY2_ECTSI3.000e-3264.13Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A5J4YQ76_PORPP4.000e-2757.47Carbon catabolite repressor protein 4-like 4 n=1 T... [more]
A0A7S3BQZ3_9VIRI4.820e-2656.32Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S0IU27_9EUKA2.120e-2559.14Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
C1EEK0_MICCC1.050e-2456.99Endo/exonuclease/phosphatase domain-containing pro... [more]
C1MX28_MICPC2.510e-2458.06Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S0MFD4_9CRYP2.560e-2455.56Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0T4H4_9CHLO7.000e-2459.55Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A090M8K0_OSTTA7.180e-2457.78Endonuclease/exonuclease/phosphatase n=2 Tax=Ostre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig80387contigH-elongata_contig80387:1487..2421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.6e-26
Seed eggNOG ortholog2880.D7FSY2
KEGG koko:K19612
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGs2CXNT@1,2RYRW@2759
EC3.1.13.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-27_006850.1
Exons2
Model size282
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931209.7660842-CDS-H-elongata_contig80387:1486..16331622931209.7660842-CDS-H-elongata_contig80387:1486..1633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80387 1487..1633 +
1691679742.7594397-CDS-H-elongata_contig80387:1486..16331691679742.7594397-CDS-H-elongata_contig80387:1486..1633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80387 1487..1633 +
1622931209.7828124-CDS-H-elongata_contig80387:2286..24211622931209.7828124-CDS-H-elongata_contig80387:2286..2421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80387 2287..2421 +
1691679742.7736144-CDS-H-elongata_contig80387:2286..24211691679742.7736144-CDS-H-elongata_contig80387:2286..2421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig80387 2287..2421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig80387.15691.1prot_H-elongata_contig80387.15691.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig80387 1487..2421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig80387.15691.1

>prot_H-elongata_contig80387.15691.1 ID=prot_H-elongata_contig80387.15691.1|Name=mRNA_H-elongata_contig80387.15691.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MSNPADFRVVTYNILCSSLAVPDHFPFCEPIDLDATTRLKRVKRKLAKEM
ANGAVICLQEVSLTWAGELHVFFALKNYAFVTTQYGSRFNDYMG
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mRNA from alignment at H-elongata_contig80387:1487..2421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig80387.15691.1 ID=mRNA_H-elongata_contig80387.15691.1|Name=mRNA_H-elongata_contig80387.15691.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=935bp|location=Sequence derived from alignment at H-elongata_contig80387:1487..2421+ (Himanthalia elongata Himel1 dioecious)
ATGTCAAACCCCGCGGACTTCCGTGTGGTGACGTACAACATCCTCTGCAG CAGCTTGGCCGTGCCAGATCACTTTCCTTTTTGCGAACCCATCGATCTGG ATGCAACCACGCGGCTTAAGCGTGTCAAGAGGAAGCTCGCGAAAGAGGTG CGCAAAATTAAGAGAAGAGTTGCGCAAAATTACGAAATTACTTACACAAC AACAACAACAACAACTTTAGGATACACCATCCAGCGGGCTCTTGCCTCGA AGAGAGACGGCATGCGTGTGAAGGCAGCGTGCGGAAACGATCGGAATAAA TCGCGCATAACACTAGGGTCTACCATTTCAGCAGTATTGTCTCATATATA GTGATGGAAGTCTGGGGATGTATTCTTCTCTTAGCGTTTTTGCAGTACCC ATCTATAACTTCATTGGAAATTGCTTCTGGGCGCCTGGCGTCCAGAACAT GCCGCTCTAATGAAGGTTCAAGGCCTGACATCAAAGTGTACAGGAGTTAC ATTGCTTGAGCTCTATCCATCCATTGCGCGGCACCAGCACCATGGTTCGT AGTTTACATAAGGCTCTATCAAAATCCCTGAAGCGCGACCGTGGTGCCGC GATTCCCTGGCTCGGTCTGATTTCGAGTTTGTCCACGGTTTCTCTTTTTA AAACGATTTACTCTACCACATACCATACTGTCATGCACTGCACTGCGCAC TCCAAATACTCCCCATACCATGCGCCTTATAAGAATATTATCGCCTCGTT GAACAGCCCACCCCTTATTTTAGTGTCTGGGCGTCTGTTTGTGTCTTCAG ATGGCTAACGGGGCTGTGATCTGTCTGCAGGAGGTGAGCCTCACGTGGGC CGGTGAGCTTCACGTCTTCTTCGCTTTGAAGAACTACGCCTTCGTCACGA CCCAATACGGTTCACGCTTTAACGACTACATGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig80387:1487..2421+

>mRNA_H-elongata_contig80387.15691.1 ID=mRNA_H-elongata_contig80387.15691.1|Name=mRNA_H-elongata_contig80387.15691.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig80387:1487..2421+ (Himanthalia elongata Himel1 dioecious)
ATGTCAAACCCCGCGGACTTCCGTGTGGTGACGTACAACATCCTCTGCAG
CAGCTTGGCCGTGCCAGATCACTTTCCTTTTTGCGAACCCATCGATCTGG
ATGCAACCACGCGGCTTAAGCGTGTCAAGAGGAAGCTCGCGAAAGAGATG
TCAAACCCCGCGGACTTCCGTGTGGTGACGTACAACATCCTCTGCAGCAG
CTTGGCCGTGCCAGATCACTTTCCTTTTTGCGAACCCATCGATCTGGATG
CAACCACGCGGCTTAAGCGTGTCAAGAGGAAGCTCGCGAAAGAGATGGCT
AACGGGGCTGTGATCTGTCTGCAGGAGGTGAGCCTCACGTGGGCCGGTGA
GCTTCACGTCTTCTTCGCTTTGAAGAACTACGCCTTCGTCACGACCCAAT
ACGGTTCACGCTTTAACGACTACATGGGTATGGCTAACGGGGCTGTGATC
TGTCTGCAGGAGGTGAGCCTCACGTGGGCCGGTGAGCTTCACGTCTTCTT
CGCTTTGAAGAACTACGCCTTCGTCACGACCCAATACGGTTCACGCTTTA
ACGACTACATGGGT
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