mRNA_H-elongata_contig79974.15647.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79974.15647.1
Unique NamemRNA_H-elongata_contig79974.15647.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79974.15647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79974contigH-elongata_contig79974:820..1503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size659
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79974.15647.1prot_H-elongata_contig79974.15647.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79974 846..1458 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931204.7649536-UTR-H-elongata_contig79974:819..8451622931204.7649536-UTR-H-elongata_contig79974:819..845Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79974 820..845 +
1691679740.6803968-UTR-H-elongata_contig79974:819..8451691679740.6803968-UTR-H-elongata_contig79974:819..845Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79974 820..845 +
1622931204.8133097-UTR-H-elongata_contig79974:1458..15031622931204.8133097-UTR-H-elongata_contig79974:1458..1503Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79974 1459..1503 +
1691679740.7135978-UTR-H-elongata_contig79974:1458..15031691679740.7135978-UTR-H-elongata_contig79974:1458..1503Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79974 1459..1503 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931204.7801676-CDS-H-elongata_contig79974:845..12191622931204.7801676-CDS-H-elongata_contig79974:845..1219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79974 846..1219 +
1691679740.689852-CDS-H-elongata_contig79974:845..12191691679740.689852-CDS-H-elongata_contig79974:845..1219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79974 846..1219 +
1622931204.7984045-CDS-H-elongata_contig79974:1244..14581622931204.7984045-CDS-H-elongata_contig79974:1244..1458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79974 1245..1458 +
1691679740.701642-CDS-H-elongata_contig79974:1244..14581691679740.701642-CDS-H-elongata_contig79974:1244..1458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79974 1245..1458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79974.15647.1

>prot_H-elongata_contig79974.15647.1 ID=prot_H-elongata_contig79974.15647.1|Name=mRNA_H-elongata_contig79974.15647.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
MYTEVRRSHQKIVMQELAATLGVTAEMLQPALDLSKCLEDVASRADNAYQ
KAVADYNGSIAARHAAAAARVAAARATELVAAGAQVMVTPMHPGGSTMPA
AAPAPVSTATINYQQQQQQQQHNLHSSINISSSNSSSNTSSNSTIITGWR
LRPRTAWSSLRWPTVEPRRRLLRQEEPAPGRRRGVIGAGGAGRVP*
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mRNA from alignment at H-elongata_contig79974:820..1503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79974.15647.1 ID=mRNA_H-elongata_contig79974.15647.1|Name=mRNA_H-elongata_contig79974.15647.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=684bp|location=Sequence derived from alignment at H-elongata_contig79974:820..1503+ (Himanthalia elongata Himel1 dioecious)
CGACTGTCGGCCCCCAGGGCGACCACATGTACACCGAGGTTAGGCGCTCG
CACCAGAAAATCGTCATGCAAGAACTAGCGGCCACGCTCGGGGTGACCGC
GGAGATGCTCCAGCCCGCTCTGGACCTTTCCAAGTGCCTGGAGGACGTGG
CCTCCCGAGCGGACAACGCGTACCAGAAGGCGGTGGCCGACTACAACGGG
AGCATCGCCGCCAGACATGCGGCGGCGGCGGCACGCGTGGCGGCTGCACG
TGCGACGGAGTTGGTGGCAGCGGGGGCGCAGGTGATGGTGACTCCCATGC
ATCCGGGGGGTTCGACCATGCCAGCAGCGGCTCCGGCCCCGGTGTCGACA
GCGACGATAAACTACCAGCAACAGCAACAGCAGCAGCAGCATAACCTGCA
GTATCAACAACGGCTACAGCAGCAGCAGCAGCATCAACATCAGCAGCAGC
AACAGCAGCAGCAACACCAGCAGCAACAGTACCATCATCACCGGTTGGCG
TCTGCGGCCGCGAACAGCGTGGTCGTCTCTGCGGTGGCCAACCGTGGAGC
CGCGCCGTCGCCTTCTGCGCCAAGAGGAGCCAGCGCCGGGAAGGCGTCGG
GGAGTCATTGGAGCGGGGGGGGCTGGACGCGTGCCGTAGGGGGAGTGAGT
GAAGGAGGAGGTGGTGAAACCGGTGGAAACGACG
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Coding sequence (CDS) from alignment at H-elongata_contig79974:820..1503+

>mRNA_H-elongata_contig79974.15647.1 ID=mRNA_H-elongata_contig79974.15647.1|Name=mRNA_H-elongata_contig79974.15647.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig79974:820..1503+ (Himanthalia elongata Himel1 dioecious)
ATGTACACCGAGGTTAGGCGCTCGCACCAGAAAATCGTCATGCAAGAACT
AGCGGCCACGCTCGGGGTGACCGCGGAGATGCTCCAGCCCGCTCTGGACC
TTTCCAAGTGCCTGGAGGACGTGGCCTCCCGAGCGGACAACGCGTACCAG
AAGGCGGTGGCCGACTACAACGGGAGCATCGCCGCCAGACATGCGGCGGC
GGCGGCACGCGTGGCGGCTGCACGTGCGACGGAGTTGGTGGCAGCGGGGG
CGCAGGTGATGGTGACTCCCATGCATCCGGGGGGTTCGACCATGCCAGCA
GCGGCTCCGGCCCCGGTGTCGACAGCGACGATAAACTACCAGCAACAGCA
ACAGCAGCAGCAGCATAACCTGCAATGTACACCGAGGTTAGGCGCTCGCA
CCAGAAAATCGTCATGCAAGAACTAGCGGCCACGCTCGGGGTGACCGCGG
AGATGCTCCAGCCCGCTCTGGACCTTTCCAAGTGCCTGGAGGACGTGGCC
TCCCGAGCGGACAACGCGTACCAGAAGGCGGTGGCCGACTACAACGGGAG
CATCGCCGCCAGACATGCGGCGGCGGCGGCACGCGTGGCGGCTGCACGTG
CGACGGAGTTGGTGGCAGCGGGGGCGCAGGTGATGGTGACTCCCATGCAT
CCGGGGGGTTCGACCATGCCAGCAGCGGCTCCGGCCCCGGTGTCGACAGC
GACGATAAACTACCAGCAACAGCAACAGCAGCAGCAGCATAACCTGCACA
GCAGCATCAACATCAGCAGCAGCAACAGCAGCAGCAACACCAGCAGCAAC
AGTACCATCATCACCGGTTGGCGTCTGCGGCCGCGAACAGCGTGGTCGTC
TCTGCGGTGGCCAACCGTGGAGCCGCGCCGTCGCCTTCTGCGCCAAGAGG
AGCCAGCGCCGGGAAGGCGTCGGGGAGTCATTGGAGCGGGGGGGGCTGGA
CGCGTGCCGTAGCAGCAGCATCAACATCAGCAGCAGCAACAGCAGCAGCA
ACACCAGCAGCAACAGTACCATCATCACCGGTTGGCGTCTGCGGCCGCGA
ACAGCGTGGTCGTCTCTGCGGTGGCCAACCGTGGAGCCGCGCCGTCGCCT
TCTGCGCCAAGAGGAGCCAGCGCCGGGAAGGCGTCGGGGAGTCATTGGAG
CGGGGGGGGCTGGACGCGTGCCGTAG
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