mRNA_H-elongata_contig79950.15644.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79950.15644.1
Unique NamemRNA_H-elongata_contig79950.15644.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79950.15644.1 vs. uniprot
Match: D7FYV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV4_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 9.820e-62
Identity = 133/213 (62.44%), Postives = 148/213 (69.48%), Query Frame = 1 
Query:  169 RQASRLTLQESPCLQGSGIALAVEG--DASLLANHGPLPSRSYVILVRPHRRRVGKRG--GGDRGKGQELVGAFDEGYYWHGVGETTAVEALGNLLCQQVERMFPPXXXXXXXXXXXXGAVGRKRCGGGVVVDCDMMRGCVSDVKLGWPIPDGFWACILPEGSPYLESGFVPEDHRRKLLSQDLRPSSRSRPVRIFGVCFESRKAGRSFVWEV 795
            RQA  L LQE+PCLQGSGI +AVEG   ASLLA HGPLP RSY+ LVRP  RRVG     GG    G E VG FDEGYYWHGVGET AVE +G LLCQQV+RMFP  XXXXXXXXXXX         GG  +   MMRG V+DVK+G P+P+GFW C+LPEGSP            R++L QDLRP  RSR VR+FGVC  SRKA +SFVWEV
Sbjct:   61 RQARVLELQENPCLQGSGIVIAVEGPCSASLLAKHGPLPDRSYICLVRPRSRRVGSANEKGGVHFCGGERVGTFDEGYYWHGVGETAAVEGVGILLCQQVDRMFPSPXXXXXXXXXXXXXXXXXXGIGGAGLFGGMMRGFVADVKVGLPVPNGFWECVLPEGSP---------SDSRRMLWQDLRPDRRSRAVRVFGVCAGSRKARQSFVWEV 264
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79950.15644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYV4_ECTSI9.820e-6262.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79950contigH-elongata_contig79950:363..2753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionADF-H/Gelsolin-like domain
Ec32 orthologEc-19_002610.1
Exons4
Model size801
Cds size801
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79950.15644.1prot_H-elongata_contig79950.15644.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79950 363..2753 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931204.4899936-CDS-H-elongata_contig79950:362..5911622931204.4899936-CDS-H-elongata_contig79950:362..591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79950 363..591 -
1691679740.5766711-CDS-H-elongata_contig79950:362..5911691679740.5766711-CDS-H-elongata_contig79950:362..591Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79950 363..591 -
1622931204.5114756-CDS-H-elongata_contig79950:816..9591622931204.5114756-CDS-H-elongata_contig79950:816..959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79950 817..959 -
1691679740.5863109-CDS-H-elongata_contig79950:816..9591691679740.5863109-CDS-H-elongata_contig79950:816..959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79950 817..959 -
1622931204.5295627-CDS-H-elongata_contig79950:1735..19751622931204.5295627-CDS-H-elongata_contig79950:1735..1975Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79950 1736..1975 -
1691679740.5967283-CDS-H-elongata_contig79950:1735..19751691679740.5967283-CDS-H-elongata_contig79950:1735..1975Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79950 1736..1975 -
1622931204.5486915-CDS-H-elongata_contig79950:2564..27531622931204.5486915-CDS-H-elongata_contig79950:2564..2753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79950 2565..2753 -
1691679740.6075087-CDS-H-elongata_contig79950:2564..27531691679740.6075087-CDS-H-elongata_contig79950:2564..2753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79950 2565..2753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79950.15644.1

>prot_H-elongata_contig79950.15644.1 ID=prot_H-elongata_contig79950.15644.1|Name=mRNA_H-elongata_contig79950.15644.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=267bp
QGRRLLDRLPQSTPQAPPPLEVDQGCEPALFLGLFSCMVPPLAAVVHQTR
NETPDLRQASRLTLQESPCLQGSGIALAVEGDASLLANHGPLPSRSYVIL
VRPHRRRVGKRGGGDRGKGQELVGAFDEGYYWHGVGETTAVEALGNLLCQ
QVERMFPPPSAAQGRRRRKRGAVGRKRCGGGVVVDCDMMRGCVSDVKLGW
PIPDGFWACILPEGSPYLESGFVPEDHRRKLLSQDLRPSSRSRPVRIFGV
CFESRKAGRSFVWEVQ*
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mRNA from alignment at H-elongata_contig79950:363..2753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79950.15644.1 ID=mRNA_H-elongata_contig79950.15644.1|Name=mRNA_H-elongata_contig79950.15644.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2391bp|location=Sequence derived from alignment at H-elongata_contig79950:363..2753- (Himanthalia elongata Himel1 dioecious)
CAGGGGAGGAGGCTGTTGGATCGTCTGCCGCAATCGACTCCTCAGGCTCC
CCCTCCTCTCGAGGTAGACCAGGGCTGCGAGCCAGCACTTTTCCTTGGCC
TGTTTTCGTGCATGGTACCCCCCCTAGCGGCGGTGGTACACCAGACTCGG
AATGAAACGCCAGATCTCAGGCAAGCCAGTCGTCTTACGGTGCTCAATAC
AAAACGGTTGCGATAATATACAACAAGTATAGGTGCTCGTTTTTCGACTA
AGGGGCTCGCTTCTAGCGAGAGATGCCTTTCGCTTACTCTCCACGCGGAG
TTCGATCAATGTGTACTGTTTACTGTGAGCCATAAAAAACCTCGACGGGT
TATACTGATATACTGCGGTAACGCTGAACACGGCAGTTGGGGGAGGATCA
CATTTAATCTTAAAAATGAACTCTGTTACTTCCCATTTGAAACGAATAAA
ATGTTATAATCATTTTAAGTGAAAAATGAACTCATTAAAACCATGTATGT
ATGGATGTCTTCGGAGTGCCCTTGGTGCTCTAGTCTGCTCAGTTTTGGTT
TGGCGATGTACACCGCTTACGGTACGGTACGGTTAACAAGGATGTTCGGT
GGTCTAGCTTCTTAGGCGCGTTGTGAATGATACGCGTCACGTCCCTCCCA
CCCTCAAAATACTAAAATATTGGTTTCAAATATGTTCTGAGTTCGGCGCC
TTGGAAAAAAAGACAATTGGATGTTCGGAGGGTTCTAATGAGTTAATATG
TTTTTAATAATAACGCAGGGTGTTCGAGCTCCAGGAGAGTCCTTGTCTGC
AGGGATCGGGGATCGCCTTGGCTGTTGAGGGAGACGCGTCCCTTCTGGCA
AATCACGGTCCGCTTCCCAGCCGCAGCTACGTAATTTTGGTTCGTCCCCA
TCGTCGCAGGGTGGGCAAGCGCGGTGGAGGTGACCGGGGAAAAGGGCAAG
AGTTGGTCGGTGCCTTCGATGAGGGGTACTACTGGCACGGTGTAGGGGAG
ACGACGGCTGTGGAGGCGGTGAGACAAGAGATGGGACGATGTGGCGTCCT
TTTCTTGTTCGACGCGCGGTAGATGACGTTAGATCGATCGAAGCGTTGGC
AAAAAAATGACGGACGGACAGACAGAGGCAATGGTAATAACTGTAACCGT
AACCGTTGAGGATACAAGAGGGAGGGATAAGGGGGAGAGAGTTGTCAATT
TTTGCTGATGGGACCAGCGAGCTATTCAATTCAACGTGCTAACTTGCTAC
TGTATTATTTACTATACTATATACTATACTATACTAACCTACTACTGCTG
CAATGCAACGTTGCTCGAGGAATGGAGCGGAGACCTCTTAACGAACGCCA
CACTTTAGCGGGGGGTGTTGAGATATTATCATTTTGGAGGGGGTGGAATC
ATAAACGGCAAATGAATAGAAAGGACGCATCGATATTGATATTGATATTG
ATGCTGTATGGGTATATATAGACATAGACTAGACATGTATTAATATATAT
ATCAAACAGGAAACGGCTCGTAGCTCTAGACCTCCGCTGCTTTTTTCGGC
CACTGAACAATCGGGCATCTAGAGGTTCCGTCGATCGAGTCAAGGCTCCA
TTCGCTTTTGCTCTTCAATCTCAAGCTTTATAACGTCTTGTTCTTCCTAT
AGTATATACATCACTAGAATAGCTACCCCGGGTAACTATTAATACTGCAC
TAGGGTGGAGAGGTAATAGGTATAGGTTTGGAGCCTCGGCTGAGGTCTCT
TGTTGCCTTTGCCAAACTCCTTCCGGACCCATCCCCCGCATCAGTTGGGC
AATCTGCTGTGCCAGCAAGTGGAGCGGATGTTCCCCCCGCCTTCGGCAGC
TCAAGGCCGACGCAGACGGAAAAGGGGGGCCGTCGGTAGAAAGCGTTGCG
GCGGGGGGGTCGTCGTCGACTGCGATATGATGAGAGGGTGAGCGACAAAC
GAGATGCACGACGTAGCGCAACAGGCACGCCTCGCCTCGCCTTAGCGATA
GCCATGTCCAAATATTCCCCCCGTCCTCCCGTCGTTCCGAAGATGCGTGG
TCAATGGTCTAACAGCTAAGGCATAGAAAAATTGAGGTACTGTCCCGCTC
CCCCCCATCGCCGTTTTGAAAACCGCTATTTTTTTCATGAACGTCCGAAC
GAATGATAACAGATGCGTGTCAGACGTGAAACTCGGCTGGCCCATCCCCG
ACGGCTTCTGGGCATGCATCCTCCCCGAAGGATCTCCATATCTCGAGTCT
GGCTTTGTTCCCGAGGACCATCGCCGGAAGCTACTGTCACAAGACCTTCG
CCCAAGCAGCCGCTCGAGGCCCGTCCGGATCTTTGGAGTTTGCTTCGAGA
GCAGGAAGGCGGGACGGAGCTTCGTTTGGGAGGTACAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig79950:363..2753-

>mRNA_H-elongata_contig79950.15644.1 ID=mRNA_H-elongata_contig79950.15644.1|Name=mRNA_H-elongata_contig79950.15644.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1602bp|location=Sequence derived from alignment at H-elongata_contig79950:363..2753- (Himanthalia elongata Himel1 dioecious)
CAGGGGAGGAGGCTGTTGGATCGTCTGCCGCAATCGACTCCTCAGGCTCC
CCCTCCTCTCGAGGTAGACCAGGGCTGCGAGCCAGCACTTTTCCTTGGCC
TGTTTTCGTGCATGGTACCCCCCCTAGCGGCGGTGGTACACCAGACTCGG
AATGAAACGCCAGATCTCAGGCAAGCCAGTCGTCTTACGCAGGGGAGGAG
GCTGTTGGATCGTCTGCCGCAATCGACTCCTCAGGCTCCCCCTCCTCTCG
AGGTAGACCAGGGCTGCGAGCCAGCACTTTTCCTTGGCCTGTTTTCGTGC
ATGGTACCCCCCCTAGCGGCGGTGGTACACCAGACTCGGAATGAAACGCC
AGATCTCAGGCAAGCCAGTCGTCTTACGCTCCAGGAGAGTCCTTGTCTGC
AGGGATCGGGGATCGCCTTGGCTGTTGAGGGAGACGCGTCCCTTCTGGCA
AATCACGGTCCGCTTCCCAGCCGCAGCTACGTAATTTTGGTTCGTCCCCA
TCGTCGCAGGGTGGGCAAGCGCGGTGGAGGTGACCGGGGAAAAGGGCAAG
AGTTGGTCGGTGCCTTCGATGAGGGGTACTACTGGCACGGTGTAGGGGAG
ACGACGGCTGTGGAGGCGCTCCAGGAGAGTCCTTGTCTGCAGGGATCGGG
GATCGCCTTGGCTGTTGAGGGAGACGCGTCCCTTCTGGCAAATCACGGTC
CGCTTCCCAGCCGCAGCTACGTAATTTTGGTTCGTCCCCATCGTCGCAGG
GTGGGCAAGCGCGGTGGAGGTGACCGGGGAAAAGGGCAAGAGTTGGTCGG
TGCCTTCGATGAGGGGTACTACTGGCACGGTGTAGGGGAGACGACGGCTG
TGGAGGCGTTGGGCAATCTGCTGTGCCAGCAAGTGGAGCGGATGTTCCCC
CCGCCTTCGGCAGCTCAAGGCCGACGCAGACGGAAAAGGGGGGCCGTCGG
TAGAAAGCGTTGCGGCGGGGGGGTCGTCGTCGACTGCGATATGATGAGAG
GTTGGGCAATCTGCTGTGCCAGCAAGTGGAGCGGATGTTCCCCCCGCCTT
CGGCAGCTCAAGGCCGACGCAGACGGAAAAGGGGGGCCGTCGGTAGAAAG
CGTTGCGGCGGGGGGGTCGTCGTCGACTGCGATATGATGAGAGGATGCGT
GTCAGACGTGAAACTCGGCTGGCCCATCCCCGACGGCTTCTGGGCATGCA
TCCTCCCCGAAGGATCTCCATATCTCGAGTCTGGCTTTGTTCCCGAGGAC
CATCGCCGGAAGCTACTGTCACAAGACCTTCGCCCAAGCAGCCGCTCGAG
GCCCGTCCGGATCTTTGGAGTTTGCTTCGAGAGCAGGAAGGCGGGACGGA
GCTTCGTTTGGGAGGTACAGTGAATGCGTGTCAGACGTGAAACTCGGCTG
GCCCATCCCCGACGGCTTCTGGGCATGCATCCTCCCCGAAGGATCTCCAT
ATCTCGAGTCTGGCTTTGTTCCCGAGGACCATCGCCGGAAGCTACTGTCA
CAAGACCTTCGCCCAAGCAGCCGCTCGAGGCCCGTCCGGATCTTTGGAGT
TTGCTTCGAGAGCAGGAAGGCGGGACGGAGCTTCGTTTGGGAGGTACAGT
GA
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