mRNA_H-elongata_contig79944.15643.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79944.15643.1
Unique NamemRNA_H-elongata_contig79944.15643.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79944.15643.1 vs. uniprot
Match: A0A6H5L608_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L608_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 3.420e-45
Identity = 88/127 (69.29%), Postives = 102/127 (80.31%), Query Frame = 1 
Query:  148 TMVAAGLGLVIPLVLTSVCRRLWRHGVALSRGRRRPN-RGFLTVGFAVEIAVLSAASYAFKRVASSMQMEAEHFDPYQILDLPQRANATVIRSQYRRLSLKHHPDKNPRNKREAAKKFDQVAKAYKV 525
            TM AAGLGL+IP+V  SVCR+LW HG+  +RGR  P+ +G L V F  ++ VL A+ YAF +VASSMQ EAEHFDPY ILDLP RANATVI+S YRRLSLKHHPDKNP N+REA KKF+QVAKAYK 
Sbjct:    6 TMYAAGLGLIIPVVGISVCRKLWSHGLRAARGRAAPDGKGLLNVWFLGQVLVLGASCYAFNQVASSMQTEAEHFDPYHILDLPSRANATVIKSHYRRLSLKHHPDKNPGNRREANKKFNQVAKAYKA 132
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BLAST of mRNA_H-elongata_contig79944.15643.1 vs. uniprot
Match: A0A2I3SAM3_PANTR (J domain-containing protein n=3 Tax=Homininae TaxID=207598 RepID=A0A2I3SAM3_PANTR)

HSP 1 Score: 66.6 bits (161), Expect = 4.880e-9
Identity = 29/53 (54.72%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:  367 DPYQILDLPQRANATVIRSQYRRLSLKHHPDKNPRNKREAAKKFDQVAKAYKV 525
            D Y++LD+P++A++  I+  YR+L+LK HPDKNP+NK EA ++F QVA+AY+V
Sbjct:    3 DYYEVLDVPRQASSKAIKKAYRKLALKWHPDKNPKNKEEAERRFKQVAEAYEV 55
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BLAST of mRNA_H-elongata_contig79944.15643.1 vs. uniprot
Match: A0A8C9IIS0_9PRIM (J domain-containing protein n=1 Tax=Piliocolobus tephrosceles TaxID=591936 RepID=A0A8C9IIS0_9PRIM)

HSP 1 Score: 63.2 bits (152), Expect = 2.390e-8
Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:  367 DPYQILDLPQRANATVIRSQYRRLSLKHHPDKNPRNKREAAKKFDQVAKAYKV 525
            D Y++L +P++A+   I+  YR+L+LK HPDKNP NK EA ++F QVA+AY+V
Sbjct:    3 DYYEVLGVPRQASTEAIKKAYRKLALKWHPDKNPENKEEAERRFQQVAEAYEV 55
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BLAST of mRNA_H-elongata_contig79944.15643.1 vs. uniprot
Match: A0A7S1XYL3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYL3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 7.450e-8
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  367 DPYQILDLPQRANATVIRSQYRRLSLKHHPDKNPRNKREAAKKFDQVAKAYKV 525
            D Y+IL + + A    ++  YR+L+LKHHPDKNP N+ EAAKKF +V++AY+V
Sbjct:   24 DYYRILGVKRNAKEAELKKAYRKLALKHHPDKNPDNQEEAAKKFAEVSEAYEV 76
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BLAST of mRNA_H-elongata_contig79944.15643.1 vs. uniprot
Match: UPI00198CD759 (DnaJ domain-containing protein n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=UPI00198CD759)

HSP 1 Score: 58.9 bits (141), Expect = 1.450e-7
Identity = 29/56 (51.79%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:  358 EHFDPYQILDLPQRANATVIRSQYRRLSLKHHPDKNPRNKREAAKKFDQVAKAYKV 525
            +H D Y+ILD+P+ A+A VI+S YR+L+ K+HPD NP NK E+ KKF ++ +A +V
Sbjct:    2 DHIDYYKILDVPKSASAAVIKSAYRKLARKYHPDLNPGNK-ESEKKFKEINEANEV 56
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BLAST of mRNA_H-elongata_contig79944.15643.1 vs. uniprot
Match: A0A7L2PVP4_9PASS (DNJB8 protein (Fragment) n=1 Tax=Hypocryptadius cinnamomeus TaxID=589841 RepID=A0A7L2PVP4_9PASS)

HSP 1 Score: 61.2 bits (147), Expect = 2.490e-7
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:  367 DPYQILDLPQRANATVIRSQYRRLSLKHHPDKNPRNKREAAKKFDQVAKAYKVDGSRIVGPGRTQGARRESWRS*ARQSQHAA 615
            D Y++L L + A+   I+  Y +L+LK HPDKNPRNK EA KKF ++ +AY++    +  P +     +    S AR+ +HAA
Sbjct:    3 DYYKVLGLQKNASQDAIKKSYHKLALKWHPDKNPRNKEEAEKKFKEIVEAYEI----LSDPQKRSLYDKSVEESRARRERHAA 81
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BLAST of mRNA_H-elongata_contig79944.15643.1 vs. uniprot
Match: A0A8C3GUA0_9CORV (J domain-containing protein n=1 Tax=Corvus moneduloides TaxID=1196302 RepID=A0A8C3GUA0_9CORV)

HSP 1 Score: 58.9 bits (141), Expect = 3.140e-7
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:  367 DPYQILDLPQRANATVIRSQYRRLSLKHHPDKNPRNKREAAKKFDQVAKAYKV 525
            D Y+IL+L + A+   I+  Y +L+LK HPDKNPRNK EA KKF ++ +AY++
Sbjct:    3 DYYKILELQEDASQDDIKKSYHKLALKWHPDKNPRNKEEAEKKFKEIVEAYEI 55
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BLAST of mRNA_H-elongata_contig79944.15643.1 vs. uniprot
Match: A0A8C0VQ41_CYACU (DnaJ heat shock protein family (Hsp40) member B8 n=1 Tax=Cyanistes caeruleus TaxID=156563 RepID=A0A8C0VQ41_CYACU)

HSP 1 Score: 59.7 bits (143), Expect = 3.460e-7
Identity = 26/53 (49.06%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  367 DPYQILDLPQRANATVIRSQYRRLSLKHHPDKNPRNKREAAKKFDQVAKAYKV 525
            D Y++L+L + A+  VI+  Y +L+LK HPDKNP+NK EA KKF ++ +AY++
Sbjct:    3 DYYKVLELQKDASQDVIKKSYHKLALKWHPDKNPKNKEEAEKKFKEIVEAYEI 55
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BLAST of mRNA_H-elongata_contig79944.15643.1 vs. uniprot
Match: B6VBU6_9PELO (1,4-alpha-glucan branching enzyme n=1 Tax=Caenorhabditis angaria TaxID=860376 RepID=B6VBU6_9PELO)

HSP 1 Score: 63.2 bits (152), Expect = 4.050e-7
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  367 DPYQILDLPQRANATVIRSQYRRLSLKHHPDKNPRNKREAAKKFDQVAKAYKVDGS 534
            D Y+IL L Q A+   I+S Y +LS +HHPD NP NK EAAKKF QVA AY+V GS
Sbjct: 1035 DHYKILGLAQSASQKDIKSAYYKLSKQHHPDTNPDNKEEAAKKFHQVAMAYEVLGS 1090
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BLAST of mRNA_H-elongata_contig79944.15643.1 vs. uniprot
Match: K7EX40_PELSI (J domain-containing protein n=16 Tax=Testudines TaxID=8459 RepID=K7EX40_PELSI)

HSP 1 Score: 60.8 bits (146), Expect = 4.350e-7
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:  373 YQILDLPQRANATVIRSQYRRLSLKHHPDKNPRNKREAAKKFDQVAKAYKV 525
            Y++L L Q+A+   I+  YR+L+LK HPDKNP+NK EA KKF  VA+AY+V
Sbjct:    5 YEVLGLHQKASQDDIKKSYRKLALKWHPDKNPKNKEEAEKKFKAVAEAYEV 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79944.15643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L608_9PHAE3.420e-4569.29J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A2I3SAM3_PANTR4.880e-954.72J domain-containing protein n=3 Tax=Homininae TaxI... [more]
A0A8C9IIS0_9PRIM2.390e-852.83J domain-containing protein n=1 Tax=Piliocolobus t... [more]
A0A7S1XYL3_9STRA7.450e-852.83Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
UPI00198CD7591.450e-751.79DnaJ domain-containing protein n=1 Tax=Pedobacter ... [more]
A0A7L2PVP4_9PASS2.490e-739.76DNJB8 protein (Fragment) n=1 Tax=Hypocryptadius ci... [more]
A0A8C3GUA0_9CORV3.140e-750.94J domain-containing protein n=1 Tax=Corvus monedul... [more]
A0A8C0VQ41_CYACU3.460e-749.06DnaJ heat shock protein family (Hsp40) member B8 n... [more]
B6VBU6_9PELO4.050e-760.711,4-alpha-glucan branching enzyme n=1 Tax=Caenorha... [more]
K7EX40_PELSI4.350e-756.86J domain-containing protein n=16 Tax=Testudines Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79944contigH-elongata_contig79944:924..2499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue1.1e-24
Seed eggNOG ortholog2880.D8LSY2
KEGG koko:K09537,ko:K09540
KEGG TC3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,map03060,map04141
GOsGO:0001655,GO:0001889,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0010259,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0033036,GO:0033365,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061008,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071944,GO:0072001,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0098827
EggNOG free text desc.posttranslational protein targeting to membrane, translocation
EggNOG OGsCOG5407@1,KOG0721@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044,ko03110
Hectar predicted targeting categorysignal peptide
Exons3
Model size1069
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79944.15643.1prot_H-elongata_contig79944.15643.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79944 1477..2361 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931204.374613-UTR-H-elongata_contig79944:923..13711622931204.374613-UTR-H-elongata_contig79944:923..1371Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79944 924..1371 -
1691679740.5187767-UTR-H-elongata_contig79944:923..13711691679740.5187767-UTR-H-elongata_contig79944:923..1371Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79944 924..1371 -
1622931204.3916411-UTR-H-elongata_contig79944:1446..14761622931204.3916411-UTR-H-elongata_contig79944:1446..1476Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79944 1447..1476 -
1691679740.5338655-UTR-H-elongata_contig79944:1446..14761691679740.5338655-UTR-H-elongata_contig79944:1446..1476Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79944 1447..1476 -
1622931204.4409986-UTR-H-elongata_contig79944:2361..24991622931204.4409986-UTR-H-elongata_contig79944:2361..2499Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79944 2362..2499 -
1691679740.5670063-UTR-H-elongata_contig79944:2361..24991691679740.5670063-UTR-H-elongata_contig79944:2361..2499Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79944 2362..2499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931204.407603-CDS-H-elongata_contig79944:1476..17531622931204.407603-CDS-H-elongata_contig79944:1476..1753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79944 1477..1753 -
1691679740.5448494-CDS-H-elongata_contig79944:1476..17531691679740.5448494-CDS-H-elongata_contig79944:1476..1753Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79944 1477..1753 -
1622931204.4236302-CDS-H-elongata_contig79944:2185..23611622931204.4236302-CDS-H-elongata_contig79944:2185..2361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79944 2186..2361 -
1691679740.5563653-CDS-H-elongata_contig79944:2185..23611691679740.5563653-CDS-H-elongata_contig79944:2185..2361Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79944 2186..2361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79944.15643.1

>prot_H-elongata_contig79944.15643.1 ID=prot_H-elongata_contig79944.15643.1|Name=mRNA_H-elongata_contig79944.15643.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=151bp
MSDTMVAAGLGLVIPLVLTSVCRRLWRHGVALSRGRRRPNRGFLTVGFAV
EIAVLSAASYAFKRVASSMQMEAEHFDPYQILDLPQRANATVIRSQYRRL
SLKHHPDKNPRNKREAAKKFDQVAKAYKVDGSRIVGPGRTQGARRESWRS
*
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mRNA from alignment at H-elongata_contig79944:924..2499-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79944.15643.1 ID=mRNA_H-elongata_contig79944.15643.1|Name=mRNA_H-elongata_contig79944.15643.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1576bp|location=Sequence derived from alignment at H-elongata_contig79944:924..2499- (Himanthalia elongata Himel1 dioecious)
CCGCATCGCGTGACACCATTCCTACGAAGCACGAGACAGCCGTAGAAACA
GACTGCACACTTGATTTACTCCTACCTTGCACCTATCCCTGGTAACATCT
CGACGCCGACTGACTTCATACAGAAGATTCGCCGAAAGATGAGTGATACT
ATGGTTGCAGCCGGGCTGGGTCTAGTCATCCCATTGGTGCTCACCTCCGT
CTGCCGAAGGCTCTGGAGGCACGGGGTGGCGTTGTCCAGAGGCCGCAGGC
GGCCTAACAGAGGCTTTCTGACAGTCGGGTTCGCCGTGGAGATCGCTGTC
CTCTCGGCGGCTAGGTGAGGGTGCATCGATTCGCATCTTCTTCATCGAGC
GCGTCTGTGTGGCTGGCATGCGATGTCGTCCAACGCCCCACATTCGATTT
TGATGACACGGTTTCGCGCCGCATTGTCGATGGTGTGTGCGCGCGACATA
GTGCTTGCCTCCTGCTGAGTTGTGAGCACCTCAACATATGTCCCGCGTCG
AACCTACATCAAAAGGAAGCGATCAAGAATCAGGGCAGTGAGCGCCTCTA
AAAAAATGTTCAGGGACGACGCTCTTTTGAAAAACAACGACCGCATTAAA
CTTATCGGCGTCTCTCCTGGAGAGTTAGCACCAGTGCGAAGTTTGATAAC
TTATTGTATTACCCATTTAGTCTTTTCCGTCTCACCGATTCTTTTCCGTA
TCTTTTTCTCTCGTTCTCCTCGAAATAATGAAATAATGATATCCAGCTAC
GCGTTCAAGCGCGTTGCATCTTCCATGCAGATGGAGGCGGAGCACTTCGA
CCCGTACCAGATACTGGACCTGCCCCAGAGAGCCAACGCAACGGTTATAA
GGTCCCAATACCGCCGCCTCTCCCTCAAGCACCACCCGGACAAGAATCCC
CGAAACAAGAGGGAGGCCGCGAAGAAGTTCGACCAAGTTGCGAAGGCCTA
CAAGGTGGACGGGTCACGAATCGTAGGACCAGGCAGGACACAGGGCGCGC
GGCGAGAGAGTTGGCGTAGCTAGGCACGCCAAAGCCAGCACGCCGCACGA
TGAATAAACCCTCCCAAACCCTTCCAATGTTACGTAGACCATTAAAAGCG
CAATACTCGGCTAGATTTTTTTTTCCTTCTTTTATGTACGAACATACTCT
AAATTAAAATAGGTTGAAAATGTGTCGTTTCCAACGAGTTTACAACTCAA
AAAATCGCATTCGTTCCTTCCCGGAACAGTTAATGCCGCCAGGATCACGA
AAAATGCTCGCGGCTGTTCTAACCCTCAGATCAATGCTGACTTTGTGTTT
GATCTGATCCATATATGCCTGACATGATTTCCGTAAGGTTTTAGCCCATG
GGTCAATAAAAGCCTGTTACCAGCGTGGTGTCGATCCCCTCGTGGGGGAC
AATCCCAAAGAAATTGCAAAAAAATAATACGAAGTATTAGACTTTCCCGC
TTGAACTCGAACCAGATAACTTTAGGCAAATCTTTATGTGTGGTAGAGAG
ATATGCATAAGCGAAGCAAGGAGCTAGTTTCAGACAATGACAGAGGGTGT
GGCCGGCTCAGTTTCGATCCTTGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig79944:924..2499-

>mRNA_H-elongata_contig79944.15643.1 ID=mRNA_H-elongata_contig79944.15643.1|Name=mRNA_H-elongata_contig79944.15643.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at H-elongata_contig79944:924..2499- (Himanthalia elongata Himel1 dioecious)
ATGAGTGATACTATGGTTGCAGCCGGGCTGGGTCTAGTCATCCCATTGGT
GCTCACCTCCGTCTGCCGAAGGCTCTGGAGGCACGGGGTGGCGTTGTCCA
GAGGCCGCAGGCGGCCTAACAGAGGCTTTCTGACAGTCGGGTTCGCCGTG
GAGATCGCTGTCCTCTCGGCGGCTAGATGAGTGATACTATGGTTGCAGCC
GGGCTGGGTCTAGTCATCCCATTGGTGCTCACCTCCGTCTGCCGAAGGCT
CTGGAGGCACGGGGTGGCGTTGTCCAGAGGCCGCAGGCGGCCTAACAGAG
GCTTTCTGACAGTCGGGTTCGCCGTGGAGATCGCTGTCCTCTCGGCGGCT
AGCTACGCGTTCAAGCGCGTTGCATCTTCCATGCAGATGGAGGCGGAGCA
CTTCGACCCGTACCAGATACTGGACCTGCCCCAGAGAGCCAACGCAACGG
TTATAAGGTCCCAATACCGCCGCCTCTCCCTCAAGCACCACCCGGACAAG
AATCCCCGAAACAAGAGGGAGGCCGCGAAGAAGTTCGACCAAGTTGCGAA
GGCCTACAAGGTGGACGGGTCACGAATCGTAGGACCAGGCAGGACACAGG
GCGCGCGGCGAGAGAGTTGGCGTAGCTAGCTACGCGTTCAAGCGCGTTGC
ATCTTCCATGCAGATGGAGGCGGAGCACTTCGACCCGTACCAGATACTGG
ACCTGCCCCAGAGAGCCAACGCAACGGTTATAAGGTCCCAATACCGCCGC
CTCTCCCTCAAGCACCACCCGGACAAGAATCCCCGAAACAAGAGGGAGGC
CGCGAAGAAGTTCGACCAAGTTGCGAAGGCCTACAAGGTGGACGGGTCAC
GAATCGTAGGACCAGGCAGGACACAGGGCGCGCGGCGAGAGAGTTGGCGT
AGCTAG
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