mRNA_H-elongata_contig79853.15636.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79853.15636.1
Unique NamemRNA_H-elongata_contig79853.15636.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.920e-28
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGD 201
            PTKL E+VE FM  + W+LIWTPPYMPS+QPIELFWQHGK YVSFNF+T R M EV  Q+R GWYGD
Sbjct:  494 PTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGWYGD 560
[Close]
BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5JZ92_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ92_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.610e-28
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWYGD+
Sbjct:  175 PERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDK 242
[Close]
BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.790e-28
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWYGD+
Sbjct:  192 PERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDK 259
[Close]
BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5JS64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS64_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.900e-28
Identity = 49/68 (72.06%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWY DE
Sbjct:  103 PERLEERVVMFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYRDE 170
[Close]
BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 7.000e-28
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWYGD+
Sbjct:  217 PERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDK 284
[Close]
BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.760e-27
Identity = 50/68 (73.53%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FMK K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWYGD+
Sbjct:  523 PERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGDK 590
[Close]
BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.310e-27
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWYGD+
Sbjct:  388 PERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDK 455
[Close]
BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.350e-27
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWYGD+
Sbjct:  489 PERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDK 556
[Close]
BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.400e-27
Identity = 49/68 (72.06%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS NFE  RKM EV  QIR GWYGD+
Sbjct:  499 PERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDK 566
[Close]
BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.650e-26
Identity = 48/68 (70.59%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    1 PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETGRKMHEVGDQIRLGWYGDE 204
            P +L ERV  FM+ K W LIWTPPYMPS+QPIELFWQHGK YVS  FE  RKM EV  QIR GWYGD+
Sbjct:  372 PERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGDK 439
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79853.15636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ25_ECTSI1.920e-2873.13Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5JZ92_9PHAE3.610e-2872.06DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KF39_9PHAE4.790e-2872.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS64_9PHAE4.900e-2872.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHE7_9PHAE7.000e-2872.06DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
D8LNM6_ECTSI1.760e-2773.53DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5K024_9PHAE3.310e-2772.06DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE4.350e-2772.06DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE4.400e-2772.06DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
A0A6H5KDX7_9PHAE1.650e-2670.59DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79853contigH-elongata_contig79853:2056..2259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931203.606234-CDS-H-elongata_contig79853:2055..22591622931203.606234-CDS-H-elongata_contig79853:2055..2259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79853 2056..2259 -
1691679740.233423-CDS-H-elongata_contig79853:2055..22591691679740.233423-CDS-H-elongata_contig79853:2055..2259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79853 2056..2259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79853.15636.1prot_H-elongata_contig79853.15636.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79853 2056..2259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79853.15636.1

>prot_H-elongata_contig79853.15636.1 ID=prot_H-elongata_contig79853.15636.1|Name=mRNA_H-elongata_contig79853.15636.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
PTKLAERVEGFMKSKEWELIWTPPYMPSYQPIELFWQHGKAYVSFNFETG
RKMHEVGDQIRLGWYGDE
back to top

mRNA from alignment at H-elongata_contig79853:2056..2259-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79853.15636.1 ID=mRNA_H-elongata_contig79853.15636.1|Name=mRNA_H-elongata_contig79853.15636.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig79853:2056..2259- (Himanthalia elongata Himel1 dioecious)
CCTACCAAACTCGCTGAGCGGGTAGAGGGGTTCATGAAGAGTAAGGAGTG
GGAGTTGATTTGGACACCCCCGTACATGCCGTCTTACCAGCCGATCGAGC
TGTTTTGGCAGCATGGCAAGGCGTATGTCAGCTTCAATTTTGAGACGGGA
CGGAAGATGCATGAGGTCGGGGATCAGATTCGTCTGGGTTGGTACGGGGA
CGAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig79853:2056..2259-

>mRNA_H-elongata_contig79853.15636.1 ID=mRNA_H-elongata_contig79853.15636.1|Name=mRNA_H-elongata_contig79853.15636.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig79853:2056..2259- (Himanthalia elongata Himel1 dioecious)
CCTACCAAACTCGCTGAGCGGGTAGAGGGGTTCATGAAGAGTAAGGAGTG
GGAGTTGATTTGGACACCCCCGTACATGCCGTCTTACCAGCCGATCGAGC
TGTTTTGGCAGCATGGCAAGGCGTATGTCAGCTTCAATTTTGAGACGGGA
CGGAAGATGCATGAGGTCGGGGATCAGATTCGTCTGGGTTGGTACGGGGA
CGAACCTACCAAACTCGCTGAGCGGGTAGAGGGGTTCATGAAGAGTAAGG
AGTGGGAGTTGATTTGGACACCCCCGTACATGCCGTCTTACCAGCCGATC
GAGCTGTTTTGGCAGCATGGCAAGGCGTATGTCAGCTTCAATTTTGAGAC
GGGACGGAAGATGCATGAGGTCGGGGATCAGATTCGTCTGGGTTGGTACG
GGGACGAA
back to top