mRNA_H-elongata_contig79711.15626.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79711.15626.1
Unique NamemRNA_H-elongata_contig79711.15626.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79711.15626.1 vs. uniprot
Match: A0A6H5KEF6_9PHAE (2-isopropylmalate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF6_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.260e-15
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 QSPGCSMTKEEKLVVAKQLSKLGVDIIEAGFPIASQGDFE 120
            QSPGC+MT+EEKL+VAKQLSKLGVDIIEAGFPIASQGDFE
Sbjct:  139 QSPGCTMTREEKLMVAKQLSKLGVDIIEAGFPIASQGDFE 178
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BLAST of mRNA_H-elongata_contig79711.15626.1 vs. uniprot
Match: A0A835YKD7_9STRA (2-isopropylmalate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.120e-14
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 QSPGCSMTKEEKLVVAKQLSKLGVDIIEAGFPIASQGDFE 120
            QSPGC+MT+EEKLVVA+QLSKLGVD+IEAGFPIAS GDFE
Sbjct:   52 QSPGCTMTREEKLVVARQLSKLGVDVIEAGFPIASPGDFE 91
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BLAST of mRNA_H-elongata_contig79711.15626.1 vs. uniprot
Match: K8YXP2_NANGC (2-isopropylmalate synthase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YXP2_NANGC)

HSP 1 Score: 70.5 bits (171), Expect = 1.470e-13
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 QSPGCSMTKEEKLVVAKQLSKLGVDIIEAGFPIASQGDFE 120
            QSPGC+MT EEKL VAKQL+KLGVD+IEAGFPIAS GDF+
Sbjct:   52 QSPGCTMTAEEKLQVAKQLAKLGVDVIEAGFPIASTGDFD 91
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BLAST of mRNA_H-elongata_contig79711.15626.1 vs. uniprot
Match: UPI001984F75C (2-isopropylmalate synthase n=1 Tax=Candidatus Obscuribacterales bacterium TaxID=2364082 RepID=UPI001984F75C)

HSP 1 Score: 66.2 bits (160), Expect = 1.960e-13
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 QSPGCSMTKEEKLVVAKQLSKLGVDIIEAGFPIASQGDFE 120
            QSPGCSMT+ EKL VAK L++LGVDIIEAGFPIAS+GD+E
Sbjct:   19 QSPGCSMTQAEKLRVAKALAELGVDIIEAGFPIASRGDWE 58
[Close]
BLAST of mRNA_H-elongata_contig79711.15626.1 vs. uniprot
Match: A0A7S0G0R3_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G0R3_9RHOD)

HSP 1 Score: 68.2 bits (165), Expect = 2.270e-13
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 QSPGCSMTKEEKLVVAKQLSKLGVDIIEAGFPIASQGDFE 120
            QSPG S+T EEKL++AKQL+KLGVDIIEAGFP+AS GDFE
Sbjct:   94 QSPGASLTGEEKLILAKQLAKLGVDIIEAGFPVASVGDFE 133
[Close]
BLAST of mRNA_H-elongata_contig79711.15626.1 vs. uniprot
Match: A0A7S2ZW89_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZW89_9RHOD)

HSP 1 Score: 68.6 bits (166), Expect = 3.460e-13
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 QSPGCSMTKEEKLVVAKQLSKLGVDIIEAGFPIASQGDFE 120
            QSPG S+T EEKL++AKQL+KLGVDIIEAGFPIAS GDFE
Sbjct:   93 QSPGASLTGEEKLILAKQLAKLGVDIIEAGFPIASVGDFE 132
[Close]
BLAST of mRNA_H-elongata_contig79711.15626.1 vs. uniprot
Match: A0A7C3A057_9BACT (2-isopropylmalate synthase (Fragment) n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3A057_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 3.590e-13
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 QSPGCSMTKEEKLVVAKQLSKLGVDIIEAGFPIASQGDFE 120
            QSPG SMTKEEK+ +AKQL KL VD+IEAGFP ASQGDFE
Sbjct:   17 QSPGASMTKEEKVRIAKQLEKLRVDVIEAGFPAASQGDFE 56
[Close]
BLAST of mRNA_H-elongata_contig79711.15626.1 vs. uniprot
Match: W7TP25_9STRA (2-isopropylmalate synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP25_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.710e-13
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 QSPGCSMTKEEKLVVAKQLSKLGVDIIEAGFPIASQGDFE 120
            QSPGC+MT EEKL VAKQL+KLGVD+IEAGFPIAS GDF+
Sbjct:  200 QSPGCTMTAEEKLQVAKQLAKLGVDVIEAGFPIASTGDFD 239
[Close]
BLAST of mRNA_H-elongata_contig79711.15626.1 vs. uniprot
Match: A0A7C8DI14_9DELT (2-isopropylmalate synthase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C8DI14_9DELT)

HSP 1 Score: 70.5 bits (171), Expect = 4.730e-13
Identity = 30/40 (75.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 QSPGCSMTKEEKLVVAKQLSKLGVDIIEAGFPIASQGDFE 120
            QSPGCSM ++EK+V+A+QLS+LGVD+IEAGFPIAS+GDF+
Sbjct:   18 QSPGCSMNQQEKIVIARQLSRLGVDVIEAGFPIASEGDFQ 57
[Close]
BLAST of mRNA_H-elongata_contig79711.15626.1 vs. uniprot
Match: A0A4D9D6G1_9STRA (2-isopropylmalate synthase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6G1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.730e-13
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 QSPGCSMTKEEKLVVAKQLSKLGVDIIEAGFPIASQGDFE 120
            QSPGC+MT EEKL VAKQL+KLGVD+IEAGFPIAS GDF+
Sbjct:   52 QSPGCTMTAEEKLQVAKQLAKLGVDVIEAGFPIASTGDFD 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79711.15626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEF6_9PHAE1.260e-1592.502-isopropylmalate synthase n=1 Tax=Ectocarpus sp. ... [more]
A0A835YKD7_9STRA1.120e-1487.502-isopropylmalate synthase n=1 Tax=Tribonema minus... [more]
K8YXP2_NANGC1.470e-1382.502-isopropylmalate synthase n=1 Tax=Nannochloropsis... [more]
UPI001984F75C1.960e-1380.002-isopropylmalate synthase n=1 Tax=Candidatus Obsc... [more]
A0A7S0G0R3_9RHOD2.270e-1380.00Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S2ZW89_9RHOD3.460e-1382.50Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7C3A057_9BACT3.590e-1380.002-isopropylmalate synthase (Fragment) n=1 Tax=Cand... [more]
W7TP25_9STRA4.710e-1382.502-isopropylmalate synthase n=1 Tax=Nannochloropsis... [more]
A0A7C8DI14_9DELT4.730e-1375.002-isopropylmalate synthase n=1 Tax=Myxococcales ba... [more]
A0A4D9D6G1_9STRA4.730e-1382.502-isopropylmalate synthase n=1 Tax=Nannochloropsis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79711contigH-elongata_contig79711:316..1400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1e-08
Seed eggNOG ortholog2880.D8LHU2
KEGG rclassRC00004,RC00470,RC02754
KEGG koko:K01649
KEGG ReactionR01213
KEGG Pathwayko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230
KEGG ModuleM00432
EggNOG free text desc.Belongs to the alpha-IPM synthase homocitrate synthase family
EggNOG OGsCOG0119@1,KOG2367@2759
EC2.3.3.13
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size129
Cds size111
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79711.15626.1prot_H-elongata_contig79711.15626.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79711 334..1400 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931202.3712711-UTR-H-elongata_contig79711:315..3331622931202.3712711-UTR-H-elongata_contig79711:315..333Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79711 316..333 +
1691679739.6427212-UTR-H-elongata_contig79711:315..3331691679739.6427212-UTR-H-elongata_contig79711:315..333Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig79711 316..333 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931202.3853376-CDS-H-elongata_contig79711:333..3571622931202.3853376-CDS-H-elongata_contig79711:333..357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79711 334..357 +
1691679739.6570795-CDS-H-elongata_contig79711:333..3571691679739.6570795-CDS-H-elongata_contig79711:333..357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79711 334..357 +
1622931202.397003-CDS-H-elongata_contig79711:1313..14001622931202.397003-CDS-H-elongata_contig79711:1313..1400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79711 1314..1400 +
1691679739.6674027-CDS-H-elongata_contig79711:1313..14001691679739.6674027-CDS-H-elongata_contig79711:1313..1400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79711 1314..1400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79711.15626.1

>prot_H-elongata_contig79711.15626.1 ID=prot_H-elongata_contig79711.15626.1|Name=mRNA_H-elongata_contig79711.15626.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
MTKEEKLVVAKQLSKLGVDIIEAGFPIASQGDFEVR*
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mRNA from alignment at H-elongata_contig79711:316..1400+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79711.15626.1 ID=mRNA_H-elongata_contig79711.15626.1|Name=mRNA_H-elongata_contig79711.15626.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1085bp|location=Sequence derived from alignment at H-elongata_contig79711:316..1400+ (Himanthalia elongata Himel1 dioecious)
CAGAGCCCGGGGTGCTCCATGACGAAGGAAGAAAAACTCGTGGTGAGACC
GACATCCGCCGTATCTTGGTGTATTGTGTAATACCTACAGTATAGGGTAT
ATAGTATCGCATAGGCAAGGCGGAAACAAGAGGGGAAATAAATACTCTGC
TTGTAAGGCTTGAATCCCACAAGCGGGGACAGGGGTGTGGGCGAAGGTCT
CCCCTGTCAGAATACTATATTCGTGTTCCAAAATCCATGTTTTAGACGTA
GAAACCCCAATGGAGGCCCGCTCATCATGAAGTACTTGTTTGTAGCGGAG
ACCTTCAACACGCAGAAGGTTGGCTTGTTGCGTGAAGATGGGCACATGCA
AGCGTACGAGGGGTTGAAGCCTAAATATTGTTGGTTTATCTCTTTCCACG
GCCGTGCCCCAACCATAGCTTCAAGTAATTTTTGAATATGTTGGCCGGCT
ACGCTCTTGGTGCATTGAAAGAAGGACTGAGTCACGCAGGAATTTTGAGT
CTGAATGATCCGATTAAATTGGGGAACGGGGTAAAGTATATCCGGGGACA
TGGTTGGTATACCCCCTCTTGGAATGCACCTTATTCTCGTCACAATATGT
ATCGTATCCTATGTGAGGATGGGTTGCCACACCTTCCCAAGGGGGGTCTG
TTTTCATCCTTCCCCCGTAAACTCGGGTATATATTCATATAAATCCTTTT
TGATGTCTTTAGTTGAATATTAAATGGTTTGAACTCGCACGCTTAAGAAG
ACCCCTCGTGACCAGCGACGGAGCAAAGTTAGAGAAACAAAGGCAAGAAG
TATATTTCCACTGTTTTGCACGCAAAAAAATGTGTACTGTGGAGAGAGAA
GAAAAAAAAACGTCGCAGAGATGGCTACGACGAAGCACACGTCCATGCTG
AAACACACTATGGAAAACATACCTTTTTGAGTTTTCTTTTCTTTATTTCC
TTTTTCGTCATAACACCTTCCTTCCTTCCTTCCTTTCTTCCTTCGAAGGT
GGCAAAGCAGCTGAGCAAGCTCGGAGTTGACATCATCGAGGCGGGGTTTC
CGATCGCATCCCAGGGGGACTTTGAGGTACGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig79711:316..1400+

>mRNA_H-elongata_contig79711.15626.1 ID=mRNA_H-elongata_contig79711.15626.1|Name=mRNA_H-elongata_contig79711.15626.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig79711:316..1400+ (Himanthalia elongata Himel1 dioecious)
ATGACGAAGGAAGAAAAACTCGTGATGACGAAGGAAGAAAAACTCGTGGT
GGCAAAGCAGCTGAGCAAGCTCGGAGTTGACATCATCGAGGCGGGGTTTC
CGATCGCATCCCAGGGGGACTTTGAGGTACGCTGAGTGGCAAAGCAGCTG
AGCAAGCTCGGAGTTGACATCATCGAGGCGGGGTTTCCGATCGCATCCCA
GGGGGACTTTGAGGTACGCTGA
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