mRNA_H-elongata_contig7960.15613.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7960.15613.1
Unique NamemRNA_H-elongata_contig7960.15613.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7960.15613.1 vs. uniprot
Match: D7G7D1_ECTSI (Inorganic diphosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D1_ECTSI)

HSP 1 Score: 342 bits (877), Expect = 2.110e-110
Identity = 161/204 (78.92%), Postives = 178/204 (87.25%), Query Frame = 3 
Query:   90 LSLRAEDKD--PVAAVEAYDIPIGRASPSICNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTICGDGDPLDVLVLGTSALQPGAIVDIRPLAFMVMEDEKGLDEKVLAVPDKDPRFNHMNSLRDVPEHVLREISNFFETYKQLEKSKWVKVGGWKGTTDTHDLIERTHKIYMTSKAVAEKTPKQVIGEKH 695
            +S R ED     V A EAY +PIGR SP +CNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQT+CGDGDPLDVLVLGTSALQPG+IVD+RPL FM MEDEKGLDEKVLAVPDKDPRFNHM SLRDVPEHVLREI+NFFETYKQLEKSKWVKVGGWKGTTDTH+LI++TH+ ++  K       K++ G++H
Sbjct:   89 VSSRREDGHVPEVLAAEAYSLPIGRTSPQVCNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTLCGDGDPLDVLVLGTSALQPGSIVDVRPLGFMCMEDEKGLDEKVLAVPDKDPRFNHMTSLRDVPEHVLREITNFFETYKQLEKSKWVKVGGWKGTTDTHELIDKTHQKFLEEK-------KRIKGKQH 285
[Close]
BLAST of mRNA_H-elongata_contig7960.15613.1 vs. uniprot
Match: A0A7S2TK17_9EUKA (Inorganic diphosphatase n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2TK17_9EUKA)

HSP 1 Score: 266 bits (680), Expect = 7.520e-82
Identity = 119/179 (66.48%), Postives = 142/179 (79.33%), Query Frame = 3 
Query:  117 PVAAVEAYDIPIGRASPSICNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTICGDGDPLDVLVLGTSALQPGAIVDIRPLAFMVMEDEKGLDEKVLAVPDKDPRFNHMNSLRDVPEHVLREISNFFETYKQLEKSKWVKVGGWKGTTDTHDLIERTHKIYMTSKA 653
            P + +  YD+P+G+  P++  CFIEVSR SR KYEWD E   LKLDRVLH A FYPH+YGF PQT+CGDGDPLDVLV+G   L PG++VD+RP+A+MVMEDEKG+DEKVLAV  KDP +  M +LRDVPEHVL EI++FFETYK LEK KWVKVGGWKGT DT  LIE TH +Y+  K+
Sbjct:   60 PGSQLSVYDVPLGKKMPNVVPCFIEVSRGSRNKYEWDNEQGFLKLDRVLHSAVFYPHNYGFFPQTLCGDGDPLDVLVMGDLPLVPGSLVDVRPIAYMVMEDEKGMDEKVLAVVAKDPHYVEMQTLRDVPEHVLMEIAHFFETYKALEKKKWVKVGGWKGTEDTKKLIEDTHDMYLQEKS 238
[Close]
BLAST of mRNA_H-elongata_contig7960.15613.1 vs. uniprot
Match: A0A7S0GTR4_9EUKA (Inorganic diphosphatase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GTR4_9EUKA)

HSP 1 Score: 265 bits (677), Expect = 8.320e-81
Identity = 122/190 (64.21%), Postives = 141/190 (74.21%), Query Frame = 3 
Query:   81 VVGLSLRAEDKDPVAAVEAYDIPIGRASPSICNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTICGDGDPLDVLVLGTSALQPGAIVDIRPLAFMVMEDEKGLDEKVLAVPDKDPRFNHMNSLRDVPEHVLREISNFFETYKQLEKSKWVKVGGWKGTTDTHDLIERTHKIYMTSK 650
            V   ++ + D     AV  YD+P+GR  P +  CFIEVSR SR KYEWD     LKLDRVLH A FYPH+YGF PQT+CGDGDPLDVLV+G   L PG++VD+RP+A+MVMEDEKG+DEKVLAV  KDP +  M SLRDVPEHVLREI++FF TYK LEK KWVKVGGW+GT DT  LIE TH  Y   K
Sbjct:   90 VATAAVASADVGTPMAVSVYDVPLGRKMPDVVPCFIEVSRGSRNKYEWDNNMGFLKLDRVLHSAVFYPHNYGFFPQTLCGDGDPLDVLVMGDLPLVPGSLVDVRPIAYMVMEDEKGMDEKVLAVVSKDPHYVEMKSLRDVPEHVLREIAHFFSTYKALEKKKWVKVGGWRGTEDTLKLIEETHDSYKKKK 279
[Close]
BLAST of mRNA_H-elongata_contig7960.15613.1 vs. uniprot
Match: I2CQZ4_NANGC (Inorganic diphosphatase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQZ4_NANGC)

HSP 1 Score: 249 bits (635), Expect = 2.620e-74
Identity = 116/172 (67.44%), Postives = 134/172 (77.91%), Query Frame = 3 
Query:  138 YDIPI-GRASPSICNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTICGDGDPLDVLVLGTSALQPGAIVDIRPLAFMVMEDEKGLDEKVLAVPDKDPRFNHMNSLRDVPEHVLREISNFFETYKQLEKSKWVKVGGWKGTTDTHDLIERTHKIYMTSK 650
            YDIPI G+A P     FIEVS+ SRMKYEWD    +L+LDRVLH A FYP DYGFIPQT+C DGDPLDVLV+G S+L+PG IVD+R L +MVMEDEKG DEKVLAV  KDPR   + +LRDVPEH+LREIS FFE YK LE+ KWVKVGGWKGT DT+ L+++TH  Y   K
Sbjct:  126 YDIPIEGKAFPGEVPVFIEVSKGSRMKYEWDSNVGLLRLDRVLHSAVFYPFDYGFIPQTLCDDGDPLDVLVMGDSSLEPGCIVDVRVLGYMVMEDEKGKDEKVLAVLTKDPRMQEIKTLRDVPEHILREISCFFEQYKVLEREKWVKVGGWKGTQDTYALVDKTHAAYFEGK 297
[Close]
BLAST of mRNA_H-elongata_contig7960.15613.1 vs. uniprot
Match: A0A7S2TVC7_9EUKA (Inorganic diphosphatase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TVC7_9EUKA)

HSP 1 Score: 245 bits (626), Expect = 3.500e-73
Identity = 112/198 (56.57%), Postives = 140/198 (70.71%), Query Frame = 3 
Query:  105 EDKDPVAAVEAYDIPIGRASPSICNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTICGDGDPLDVLVLGTSALQPGAIVDIRPLAFMVMEDEKGLDEKVLAVPDKDPRFNHMNSLRDVPEHVLREISNFFETYKQLEKSKWVKVGGWKGTTDTHDLIERTHKIYMTSKAVAEKTPKQVIGEKHD 698
            +D++      AY + IG+  P +   F+EVSR SR KYEWDE+   + LDRVLH A FYPH+YGF+PQT+CGDGDPLDVL++G   L+PG  VD+RP+ ++VM+DEKG DEK+L V  KDPR   + +LR+VPEHVLREI+ FFETYK LEK+KWVKVGGWKG TD   L+E TH+ Y        K  KQ  GE  D
Sbjct:  100 QDEENQPPRSAYSVEIGKNMPEVVQAFVEVSRGSRNKYEWDEKLGHIVLDRVLHSAVFYPHNYGFVPQTLCGDGDPLDVLIMGADPLEPGCFVDVRPIGYLVMQDEKGTDEKLLGVAAKDPRLYEVRTLRNVPEHVLREITQFFETYKTLEKNKWVKVGGWKGATDAKLLVEATHRTY--------KEIKQADGEVFD 289
[Close]
BLAST of mRNA_H-elongata_contig7960.15613.1 vs. uniprot
Match: A0A6U3CZ65_9EUKA (Inorganic diphosphatase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6U3CZ65_9EUKA)

HSP 1 Score: 245 bits (625), Expect = 4.770e-73
Identity = 107/176 (60.80%), Postives = 133/176 (75.57%), Query Frame = 3 
Query:  123 AAVEAYDIPIGRASPSICNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTICGDGDPLDVLVLGTSALQPGAIVDIRPLAFMVMEDEKGLDEKVLAVPDKDPRFNHMNSLRDVPEHVLREISNFFETYKQLEKSKWVKVGGWKGTTDTHDLIERTHKIYMTSK 650
            A   AY +PIG+  P +   F+EVS+ SR KYEWDE+   + LDRVLH A FYPH+YGFIPQT+CGDGDPLDVL++G   L+PG  VD+RP+ ++VM+DEKG DEK+L V  +DPR   + +LR+VPEHVLREI+ FFETYK LEK+KWVKVGGWKG TD   L+E TH+ Y   K
Sbjct:  105 ATRSAYSVPIGKDMPEVVQAFVEVSKGSRNKYEWDEKLGHIVLDRVLHSAVFYPHNYGFIPQTLCGDGDPLDVLIMGADPLEPGCFVDVRPIGYLVMQDEKGTDEKLLGVAAEDPRMYEVRTLRNVPEHVLREITQFFETYKTLEKNKWVKVGGWKGATDAKLLVESTHRTYKEIK 280
[Close]
BLAST of mRNA_H-elongata_contig7960.15613.1 vs. uniprot
Match: A0A7S2RLU3_9STRA (Inorganic diphosphatase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RLU3_9STRA)

HSP 1 Score: 237 bits (604), Expect = 6.590e-71
Identity = 107/170 (62.94%), Postives = 130/170 (76.47%), Query Frame = 3 
Query:  132 EAYDIPIGRASPSICNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTICGDGDPLDVLVLGTSALQPGAIVDIRPLAFMVMEDEKGLDEKVLAVPDKDPRFNHMNSLRDVPEHVLREISNFFETYKQLEKSKWVKVGGWKGTTDTHDLIERTHKIYM 641
            + Y  P+G   P     FIEVS  SR KYEW +E + + LDRVLH A  YP DYGFIPQT+CGDGDPLDVLV+GT  L PG IV+ RP+A+MVMEDEKG+DEKVLAV   DP F+ + + RD+PEH LRE+S+FFETYK LEK+KW KVGGWKGT DT+ LIE+TH +++
Sbjct:   45 DPYMFPLGAKCPETVPVFIEVSSGSRNKYEWSQEHSCIMLDRVLHSAVHYPSDYGFIPQTLCGDGDPLDVLVMGTQPLIPGCIVNARPIAYMVMEDEKGMDEKVLAVCANDPMFDEVKTFRDLPEHKLREVSHFFETYKGLEKNKWAKVGGWKGTQDTYQLIEQTHSMFI 214
[Close]
BLAST of mRNA_H-elongata_contig7960.15613.1 vs. uniprot
Match: A0A2E2UTV0_9FLAO (Inorganic pyrophosphatase n=2 Tax=root TaxID=1 RepID=A0A2E2UTV0_9FLAO)

HSP 1 Score: 207 bits (528), Expect = 2.290e-60
Identity = 89/152 (58.55%), Postives = 117/152 (76.97%), Query Frame = 3 
Query:  183 FIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTICGDGDPLDVLVLGTSALQPGAIVDIRPLAFMVMEDEKGLDEKVLAVPDKDPRFNHMNSLRDVPEHVLREISNFFETYKQLEKSKWVKVGGWKGTTDTHDLIERTHKIY 638
            +IEVS+ SR KYEWD++ N L LDR+LH +  YP++YGF PQT+C DGDPLDVLV+    L PG++V +RP+ +M+MEDEKG DEKVLAV DKDPR N + ++ D+P+H++ EI+NFFETYK LEK KWVKVG WK   +T  LI  +++ Y
Sbjct:   23 YIEVSKNSRFKYEWDDKLNTLVLDRILHSSVVYPYNYGFFPQTLCDDGDPLDVLVMCDGELLPGSVVFVRPICYMIMEDEKGQDEKVLAVVDKDPRLNEIETMNDIPKHIIHEITNFFETYKILEKDKWVKVGDWKNKEETLQLIRDSNETY 174
[Close]
BLAST of mRNA_H-elongata_contig7960.15613.1 vs. uniprot
Match: A0A2R5GT51_9STRA (Inorganic diphosphatase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GT51_9STRA)

HSP 1 Score: 208 bits (530), Expect = 1.790e-59
Identity = 93/179 (51.96%), Postives = 125/179 (69.83%), Query Frame = 3 
Query:  132 EAYDIPIGRASPSICNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTICGDGDPLDVLVLGTSALQPGAIVDIRPLAFMVMEDEKGLDEKVLAVPDKDPRFNHMNSLRDVPEHVLREISNFFETYKQLEKSKWVKVGGWKGTTDTHDLIERTHKIYMTSKAVAEKT 668
            + Y   +G+  P     FIEV+  SR K+EWD++  +L LDRV+H +  YP+DYGFIP T+C DGDPLD+LV+GT  L PG I   RP+A+MVMEDEKG+DEKVLAV   D  F  + +L D+P H LREIS+FFETYK LE++KW KVG W GT +T++LI R++  ++      E++
Sbjct:   85 DPYTFELGQNFPEELPVFIEVAMGSRNKFEWDQDAGVLMLDRVIHSSMHYPNDYGFIPSTLCDDGDPLDILVMGTQPLVPGCICKARPIAYMVMEDEKGMDEKVLAVLANDAMFQDIRTLEDLPSHKLREISHFFETYKALERNKWAKVGEWHGTEETYELIRRSNVAFLEKSQAIEES 263
[Close]
BLAST of mRNA_H-elongata_contig7960.15613.1 vs. uniprot
Match: A0A1Z8S0L8_9PROT (Inorganic pyrophosphatase n=1 Tax=Candidatus Endolissoclinum sp. TMED37 TaxID=1986638 RepID=A0A1Z8S0L8_9PROT)

HSP 1 Score: 204 bits (520), Expect = 3.190e-59
Identity = 93/162 (57.41%), Postives = 117/162 (72.22%), Query Frame = 3 
Query:  153 GRASPSICNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTICGDGDPLDVLVLGTSALQPGAIVDIRPLAFMVMEDEKGLDEKVLAVPDKDPRFNHMNSLRDVPEHVLREISNFFETYKQLEKSKWVKVGGWKGTTDTHDLIERTHKIY 638
            G+  P I    IEVS+ SR KYEWD+    L L RVLH +  YP++YG  PQT+  DGD LDVLV+    L PG++V +RP+ +MVMEDEKG DEKVLAV DKDPR N + +  D+P+H+++EISNFFETYK LEK KWVKVG WK   +T++LI RTH+ Y
Sbjct:   13 GKGFPEILPAXIEVSKNSRCKYEWDDNLKTLVLXRVLHSSVVYPYNYGXXPQTLGDDGDCLDVLVMXDGELLPGSMVYVRPICYMVMEDEKGYDEKVLAVVDKDPRLNEIKTXNDIPKHIIQEISNFFETYKLLEKDKWVKVGXWKNKXETYELIXRTHENY 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7960.15613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7D1_ECTSI2.110e-11078.92Inorganic diphosphatase n=1 Tax=Ectocarpus silicul... [more]
A0A7S2TK17_9EUKA7.520e-8266.48Inorganic diphosphatase n=2 Tax=Lotharella TaxID=7... [more]
A0A7S0GTR4_9EUKA8.320e-8164.21Inorganic diphosphatase n=1 Tax=Amorphochlora amoe... [more]
I2CQZ4_NANGC2.620e-7467.44Inorganic diphosphatase (Fragment) n=1 Tax=Nannoch... [more]
A0A7S2TVC7_9EUKA3.500e-7356.57Inorganic diphosphatase n=1 Tax=Lotharella oceanic... [more]
A0A6U3CZ65_9EUKA4.770e-7360.80Inorganic diphosphatase n=1 Tax=Lotharella globosa... [more]
A0A7S2RLU3_9STRA6.590e-7162.94Inorganic diphosphatase n=1 Tax=labyrinthulid quah... [more]
A0A2E2UTV0_9FLAO2.290e-6058.55Inorganic pyrophosphatase n=2 Tax=root TaxID=1 Rep... [more]
A0A2R5GT51_9STRA1.790e-5951.96Inorganic diphosphatase n=1 Tax=Hondaea fermentalg... [more]
A0A1Z8S0L8_9PROT3.190e-5957.41Inorganic pyrophosphatase n=1 Tax=Candidatus Endol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7960contigH-elongata_contig7960:4135..9102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.8
Seed ortholog evalue4e-76
Seed eggNOG ortholog2880.D7G7D1
KEGG koko:K01507
KEGG Pathwayko00190,map00190
EggNOG free text desc.inorganic diphosphatase activity
EggNOG OGsCOG0221@1,KOG1626@2759
EC3.6.1.1
COG Functional cat.C
BiGG ReactioniJN746.PP_0538
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionInorganic pyrophosphatase
Ec32 orthologEc-04_003260.1
Exons7
Model size1800
Cds size495
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931200.6501667-UTR-H-elongata_contig7960:4134..52301622931200.6501667-UTR-H-elongata_contig7960:4134..5230Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7960 4135..5230 -
1691679738.9311717-UTR-H-elongata_contig7960:4134..52301691679738.9311717-UTR-H-elongata_contig7960:4134..5230Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7960 4135..5230 -
1622931200.8606381-UTR-H-elongata_contig7960:8425..84611622931200.8606381-UTR-H-elongata_contig7960:8425..8461Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7960 8426..8461 -
1691679739.011513-UTR-H-elongata_contig7960:8425..84611691679739.011513-UTR-H-elongata_contig7960:8425..8461Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7960 8426..8461 -
1622931200.8786304-UTR-H-elongata_contig7960:8929..91021622931200.8786304-UTR-H-elongata_contig7960:8929..9102Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7960 8930..9102 -
1691679739.0195596-UTR-H-elongata_contig7960:8929..91021691679739.0195596-UTR-H-elongata_contig7960:8929..9102Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7960 8930..9102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931200.6647048-CDS-H-elongata_contig7960:5230..53591622931200.6647048-CDS-H-elongata_contig7960:5230..5359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7960 5231..5359 -
1691679738.9428964-CDS-H-elongata_contig7960:5230..53591691679738.9428964-CDS-H-elongata_contig7960:5230..5359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7960 5231..5359 -
1622931200.6796842-CDS-H-elongata_contig7960:5706..57421622931200.6796842-CDS-H-elongata_contig7960:5706..5742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7960 5707..5742 -
1691679738.9606352-CDS-H-elongata_contig7960:5706..57421691679738.9606352-CDS-H-elongata_contig7960:5706..5742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7960 5707..5742 -
1622931200.7207618-CDS-H-elongata_contig7960:6350..64201622931200.7207618-CDS-H-elongata_contig7960:6350..6420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7960 6351..6420 -
1691679738.9724076-CDS-H-elongata_contig7960:6350..64201691679738.9724076-CDS-H-elongata_contig7960:6350..6420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7960 6351..6420 -
1622931200.7567167-CDS-H-elongata_contig7960:6927..69821622931200.7567167-CDS-H-elongata_contig7960:6927..6982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7960 6928..6982 -
1691679738.9826002-CDS-H-elongata_contig7960:6927..69821691679738.9826002-CDS-H-elongata_contig7960:6927..6982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7960 6928..6982 -
1622931200.8071995-CDS-H-elongata_contig7960:7524..76031622931200.8071995-CDS-H-elongata_contig7960:7524..7603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7960 7525..7603 -
1691679738.9953184-CDS-H-elongata_contig7960:7524..76031691679738.9953184-CDS-H-elongata_contig7960:7524..7603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7960 7525..7603 -
1622931200.8347588-CDS-H-elongata_contig7960:8299..84251622931200.8347588-CDS-H-elongata_contig7960:8299..8425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7960 8300..8425 -
1691679739.0032709-CDS-H-elongata_contig7960:8299..84251691679739.0032709-CDS-H-elongata_contig7960:8299..8425Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7960 8300..8425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7960.15613.1prot_H-elongata_contig7960.15613.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7960 5231..8425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7960.15613.1

>prot_H-elongata_contig7960.15613.1 ID=prot_H-elongata_contig7960.15613.1|Name=mRNA_H-elongata_contig7960.15613.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
MKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTICGDGDPLDVLVLGTS
ALQPGAIVDIRPLAFMVMEDEKGLDEKVLAVPDKDPRFNHMNSLRDVPEH
VLREISNFFETYKQLEKSKWVKVGGWKGTTDTHDLIERTHKIYMTSKAVA
EKTPKQVIGEKHDA*
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mRNA from alignment at H-elongata_contig7960:4135..9102-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7960.15613.1 ID=mRNA_H-elongata_contig7960.15613.1|Name=mRNA_H-elongata_contig7960.15613.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4968bp|location=Sequence derived from alignment at H-elongata_contig7960:4135..9102- (Himanthalia elongata Himel1 dioecious)
GGACAAAGTTTTCCGGTAAAGGAGGCGGAGCGTTTGGAAAGAGGAGTGCG
GCAACCGCTGCTGCCGCCGCCGCTGCCGCTGTTGTCGGTTTGTCGCTCCG
CGCGGAAGACAAAGATCCCGTGGCTGCCGTGGAGGCGTACGATATTCCGA
TTGGCCGTGCTTCTCCTTCCATCGTAAGTACCTCGCGCGGTTATGTTATC
GAGGGTTTTGCGGAAGTTAGTTACTAGCTTTAAAAAATAGAAAACTAGGT
AACTCCGACCCCACCCCCCGTCGATACCACACACGGCACCTTATGGTCTG
TCGGGTGTAAACGAACGTGTGGTGTTCTGAAGAGTTATACTCCCTAGATG
CGGTTAGATTATAGTTGCGATGTCCAATAGGTATCTAGGCAGGGTTTACG
TTGTCACCAGTTGGATGTTCATACTGGAATACTGAAATATTCCACTGGTT
GGTCGTAGCATCTCAGGTCAGTCCTTCTGGGTCTTTCTGGGTCATTTGTT
GTCTACTACATAGATCACCAAAAAATAGAGAGGACCAATTGAGCTAGATC
CGAGCCGCGCCGTGCGTTCTTCGTATTTCCTCTTCCCCCCCTCCCCCATT
ACCCCTCCCCACGAAACCAACCATCAACACTCGAAACCCAGTGCAACTGC
TTCATCGAAGTGTCTCGAGAGTCGCGCATGAAGTACGAGTGGGACGAGGA
GACGAACATGCTGAAGCTCGACAGGGTCCTACACGGCGCGGCTTTCTACC
CCCACGACTACGGGTTCATCCCTCAGACGATTTGCGGCGATGGTGACCCC
CTGGTACGTTGTTTTTGTTGTTGGTATCACATTCATCAGACGATCAACCG
GATTTGGTTGCCTTCTGCTTGTGGTCAGCTGAACAGGGAAACATATTTTT
TGTGCGGTGAATGTGTAAGAAAGAAAGAAAAAGCTAAGATAAACACTAAC
GCTGACACGAAGGAAGCGTTTTTTCCCCCGCAGGTCATGGTTTTTCCGAC
GTTCTCTCCCCCTTTCTAATTTTGATGGGATATACGCGGAAGAAGCCTCA
GGAGGTTTTGGGGGGGTGTTGCGACGCCAGGCGCGACCGAGACAACTTCG
AACAAAAAACAAACAAACACCACCGTGCGAAATCTGAATTACATTAATAA
TGTACATACTATTTTGTAGGCGTAAACGCTTTCGACGACTCTGTATATAT
ATATATATATATATATATAGGTAGACGGACGCGCTTTTTCGTGCGCGAAA
TTTAGCAAAATACGGAAGGACAGTATTTTCTATTTTCTATTGTGTTAACT
AGTTCGAGTAGATTGTTCAGTGACCCATTTATACAAACGTACCAATGTGT
CCCATTATTAGCCTCCCCGCCCCACCCCCTCCCCGACCTACCGCTTCCTT
CCTCAAACACCGCTCTACACCGTTGACGTCTCTTGCCGTGCTTCGCTCTC
GCTCTCCCCCCCCTCTCATCCTCTCTCCGTGGCGGCGTCGGTCGGACAGG
ACGTCCTCGTCCTCGGAACATCGGCCTTGCAGCCGGGAGCGATCGTAGAC
ATCCGCCCTCTGGCCTTCATGGTCATGGGTGAGCAGCAGAGGGATGCGAT
TGTCCGGTCCTCGATCTCGTTTCAGCACATCGACTATCTCTCGCTAGATA
ACGCCGCGAGAAACAGAAAGGATCGTAACTCTACGAAAAGCGTGTCGTGT
GGTGCAGCGTAGTGTCCTTTTTTAGTCCATGTATTTTGTCTTGAGGTGGC
CTCGCTCTGGTATAAATTCAAACATCACTATATTTTTCAACTAGGTTTGC
TAATGAAATGGTACGGCGGGCCGATAAACCTTTCAATGGGGTGGGTACAC
CCCCCCCTTTATGTTTCTCTCTCTCTCACCAGGCACCACCCTCCCCGAAT
CTAAGATTCTTTTTGTTTTAGGTTCCGTATGGGGTATATTTTACCCCATT
TTTCGCCATCTGATTATTTCTGAATCGTGTCTCCCCCCGCATCTCTCTAC
CGACGTTTTCTCAGCGCCGCGTCATTTCATTTCATTTATTTTCTTCATTT
ATTTTTGTTTATTATTTTCTCTCTTGCTAATCTAACGTTGCTGCTCCCGT
GACATTCCTTGACCGCGCAGAGGATGAGAAGGGTTTGGACGAGAAGGTGC
TGGCTGTACCCGACAAGGACCCCAGGTCAGAGACAAGAGGCACATCATAT
GAGTTACATTACTCGGTTCTATTACTCAAAATCCCCTTTGTCGTGCTTTA
TGTATTAACTATGTTTTGGGCAGAGTTTTTTTTTATGGAGGGAGGAGGCA
TTTTAGGCGAGATCTTTACGGCACAGTCGAGGAAAAAATCTCTTCATATC
TGTGCTATTGAATTTTCGCGAGATCTTTTTCTTATCTCTCCCTCCCCAAC
GCCGCGCTGCTTTTTTTGAAAAAAAAACGAGTGTCATTTCTGTAGACAAA
AATAACGTGATTTTTCCCCTCCCATTTTAGTTGAAATCACGTATATGGCT
CTAGAAGTAACCTAATCAGCGTGAATCTATAGGCGCGCGCTCACACCAAA
AAGCACCGTTTCCCCTCCAGTTTGATTTTTGAGCGTTTCATCCTCCCGAC
TATTTCCTCGTTTCCTCTATTTTTTTTTGCAACCCGTCCCCCGTCCCCGT
CCCCAACGATGCCTTCACTGTCTTCGCGTCAGATTCAACCACATGAACTC
GCTCAGAGATGTTCCGGAGCACGTGCTGAGGGAGATCTCCAACTTCTTTG
AGGTGACGCAAAGATTTATAGCGTCGGTAGACCTTCGAATTTTGGGAGGG
TGAAATTTGCTAAAACGTCCCCGGTTCGTGAAAAGGATATGTGAAACTCT
AATCCTCGTATGGACAAAACGTATCCATCCCCTCTTTTAATGTAATCAGA
TACATCCTCTGAAGCGTTACTACCGGGGATACGGTAATTAGATCCCCGGA
AGGGGATGATTTTTTCCATCCTCACCGAAAAGCGGGGACAATGATGTTAC
GTCCCCTCCCCGACCAATCTTTGGATTGGTCGAAGGTCAGTCCCCGAACG
CAGTTATAATATTACTGAGCAGTGTAGGATGTTTCGCTTGGCAAACCTTC
ATAGAGGGGGAGAGGGGGGCGGGTACAGAAGCTTTTGAAAAATGTTGGAA
ACCCCAAAACATCTAAACCACATCACAAGAGCATGAACCTGGGCATCCAT
CGCCACCCTCGATGGTCTTTGTTTAACCCCCCATTTGTCTCCCCGGTCTG
TGCGTGCGTCGCTTGGATTTGGTGTTTCGGCCACGAACCCTTGACACCGT
CGTGGTTGGCCGCGGTACTCCTAACCGTGGACGGAAATCGGGCCGCGTGT
CTCGATTCAGACGTACAAGCAGCTGGAGAAGTCCAAGTGGGTCAAGGTGC
GAGGATTGAGCTTGCCGTTGTGTACGAGGACGGCACCGAATGTACCGAAT
GTCCAGTTTGTAGTGATTTTGTATTATGTTGGGCGTTGTTTCAGAGGGGG
AGGGGGTGCAGAAGTGGTTAGGACTCGTCTGCTCAGGTATAGATGTGCTT
GTGTGGGTGTACGCGCGGGCTTACGCGTTTACTCCCGGTTTTAAAAAGAG
GCGTTGCGACGTGACGTACTATAATATAAGCTGGCGGAATCGCTTTTTAT
TTACAAAATGCACAGCTTAGTATACAGTTGGCCCTACCGCTTCGCTCGAC
GTTTCTGCTCCCTTCACCCCTCTACCCAAACGTGCGCAACTAGGTGGGTG
GATGGAAGGGAACCACGGACACCCACGATCTCATCGAACGAACCCACAAA
ATTTACATGACCTCCAAGGCAGTCGCCGAAAAAACGCCCAAACAGGTCAT
TGGGGAGAAGCACGACGCCTAGTTTAGCGCTGCGATCCGTACGCGACCTC
CCAAGATCCTAACAGGTCATCCCGAAGAAGTCCAACAGGAGCTTTTATAT
CTATCGCTCTTCTGGACCGAGCGTAAACCACCGGCTACCGCCTGCTGTAG
GGTTTCCGCTTTCCCACGAGCGGTGATGGTGTATGCGGGTGCGCGCGCGC
GCGCTTGGGGGAGGGGTGAAGGCAGTGTGGGCGCAAATGGGCGTGTCGAA
CGCTGCTACTGCTGACGTCCCCGGGTTTTTGTTATATATGATTTAGTTTG
TAACTTATGGTACTTATCTGTTGACGTTTTAGAGAAGTGATTTTCCCTCG
TGTGCGTGGTAGCTGTGATACAACATTCCTCACGAAGTTGGGCGGTGTGG
GGGTGGTGGAAAATTTGTGTGTCCACATATTGGACGGGTAAAAGTTAAAC
GCCTGCTCTTCGTGGCGTCGCTCAAAATATTTTGATGAACGTTTCTTGTT
ATCGTTTCGTTCTGTGTGTGTTTTTGTTTAATAGACGATTGGTTGTTGCT
TTCTTTTCGGTGTCACTGTTGTTTGATGACGTCATTGGTCGCTAAGTTAG
GCTATATAAAGCCGCCGTGATGGTCGACGATCTCTGGGCATCTAAGGTAT
ACGTTTCTATCTCTCCCTCTTTGATTTGCGCCGCCGCCTCCGCGCGCAAG
TCCTTGCGCCAACGGTCGAGGTGCTATACAGGGTATGGTATCCCGCGCCA
AGTCTCCCCTCTGCCCCCCCGGTGTTGGGTACTGAGAAAAAAACATCACG
ATTGGTTGATACTGCGAGAGGATCTATTTAGTAGCGTAATAATGAGAAGC
ACCATGGTATTGTTTTTGGTTCGTCTCGTTGCCAGTGCTGTTCGGTGCGA
CGCCCGTGATAATACGTGTGCGCATTTTGGTGATGCGCCTGTTATAGATA
ATAAAATATGACTGTTTCTGCGCGAGTCGCGCGATTGGGACTATTTCCCC
CCCGCGCGCGCTCGTAGTTACGCTAATTAATTCTTTTGGGTAATTGTGGC
GCGCACGGCGTTCTCATTTTTATTTTCTCTGCTTGTGTTTGTGTGAAAGA
AAAAATAACAAGACGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig7960:4135..9102-

>mRNA_H-elongata_contig7960.15613.1 ID=mRNA_H-elongata_contig7960.15613.1|Name=mRNA_H-elongata_contig7960.15613.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig7960:4135..9102- (Himanthalia elongata Himel1 dioecious)
ATGAAGTACGAGTGGGACGAGGAGACGAACATGCTGAAGCTCGACAGGGT
CCTACACGGCGCGGCTTTCTACCCCCACGACTACGGGTTCATCCCTCAGA
CGATTTGCGGCGATGGTGACCCCCTGATGAAGTACGAGTGGGACGAGGAG
ACGAACATGCTGAAGCTCGACAGGGTCCTACACGGCGCGGCTTTCTACCC
CCACGACTACGGGTTCATCCCTCAGACGATTTGCGGCGATGGTGACCCCC
TGGACGTCCTCGTCCTCGGAACATCGGCCTTGCAGCCGGGAGCGATCGTA
GACATCCGCCCTCTGGCCTTCATGGTCATGGGACGTCCTCGTCCTCGGAA
CATCGGCCTTGCAGCCGGGAGCGATCGTAGACATCCGCCCTCTGGCCTTC
ATGGTCATGGAGGATGAGAAGGGTTTGGACGAGAAGGTGCTGGCTGTACC
CGACAAGGACCCCAGAGGATGAGAAGGGTTTGGACGAGAAGGTGCTGGCT
GTACCCGACAAGGACCCCAGATTCAACCACATGAACTCGCTCAGAGATGT
TCCGGAGCACGTGCTGAGGGAGATCTCCAACTTCTTTGAGATTCAACCAC
ATGAACTCGCTCAGAGATGTTCCGGAGCACGTGCTGAGGGAGATCTCCAA
CTTCTTTGAGACGTACAAGCAGCTGGAGAAGTCCAAGTGGGTCAAGACGT
ACAAGCAGCTGGAGAAGTCCAAGTGGGTCAAGGTGGGTGGATGGAAGGGA
ACCACGGACACCCACGATCTCATCGAACGAACCCACAAAATTTACATGAC
CTCCAAGGCAGTCGCCGAAAAAACGCCCAAACAGGTCATTGGGGAGAAGC
ACGACGCCTAGGTGGGTGGATGGAAGGGAACCACGGACACCCACGATCTC
ATCGAACGAACCCACAAAATTTACATGACCTCCAAGGCAGTCGCCGAAAA
AACGCCCAAACAGGTCATTGGGGAGAAGCACGACGCCTAG
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