mRNA_H-elongata_contig79400.15595.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79400.15595.1
Unique NamemRNA_H-elongata_contig79400.15595.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79400.15595.1 vs. uniprot
Match: D8LTA6_ECTSI (SUN domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA6_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 3.750e-35
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 PRQYNLQNYASRDSGATMLESSSGSKGMGNLLVDDKDKYAISPCEDRQWAVLGLSEDILVRTIKISSHEKYSSLVKEFQV 240
            P++ NLQNYASRDSGA +LE+S  SKGM NLL+D KDKYAISPCED+QWAVLGLSEDILVR++ I SHEKYSSL+KEFQV
Sbjct:   27 PKRVNLQNYASRDSGAVLLEASPASKGMQNLLLDSKDKYAISPCEDKQWAVLGLSEDILVRSLVIGSHEKYSSLLKEFQV 106          
BLAST of mRNA_H-elongata_contig79400.15595.1 vs. uniprot
Match: A0A6H5JRG7_9PHAE (SUN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG7_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 7.430e-33
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 PRQYNLQNYASRDSGATMLESSSGSKGMGNLLVDDKDKYAISPCEDRQWAVLGLSEDILVRTIKISSHEKYSSLVKEFQV 240
            P++ NLQNYASRDSGA +LE+S  SKGM NLL+D KDKYAISPCED+QWAVLGLSEDILVR++ I SHEKYSSL+KEFQV
Sbjct:  202 PKRVNLQNYASRDSGAVLLEASPASKGMQNLLLDSKDKYAISPCEDKQWAVLGLSEDILVRSLVIGSHEKYSSLLKEFQV 281          
BLAST of mRNA_H-elongata_contig79400.15595.1 vs. uniprot
Match: A0A835YLS6_9STRA (UNC-like C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS6_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.940e-31
Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:   16 LQNYASRDSGATMLESSSGSKGMGNLLVDDKDKYAISPCEDRQWAVLGLSEDILVRTIKISSHEKYSSLVKEFQV 240
            L+NYAS+DSGA M+E S G+KG  NLLVD KDKY ISPCE++QW V+GLSEDILVRTIK+ S+EKYS +VKEFQV
Sbjct:   18 LKNYASKDSGAVMMEHSPGTKGADNLLVDSKDKYTISPCEEKQWVVIGLSEDILVRTIKLGSYEKYSRIVKEFQV 92          
BLAST of mRNA_H-elongata_contig79400.15595.1 vs. uniprot
Match: B8CB42_THAPS (SUN domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB42_THAPS)

HSP 1 Score: 92.4 bits (228), Expect = 5.060e-20
Identity = 45/80 (56.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 PRQYNLQNYASRDSGATMLESSSGSKGMGNLLVDDKDKYAISPCEDRQWAVLGLSEDILVRTIKISSHEKYSSLVKEFQV 240
            P+++ L +YAS+ +GA +LE S   KG  NLL  D DKYAI+PCE++++ V+GLSEDILV+ IK+S++E+YSS V+EFQV
Sbjct:  301 PKEHVLVDYASKLAGAQILEKSPSLKGTSNLLTGDIDKYAIAPCEEKKYVVIGLSEDILVKRIKLSNYERYSSHVREFQV 380          
BLAST of mRNA_H-elongata_contig79400.15595.1 vs. uniprot
Match: A0A7S2S0K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0K2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 9.930e-20
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   22 NYASRDSGATMLESSSGSKGMGNLLVDDKDKYAISPCEDRQWAVLGLSEDILVRTIKISSHEKYSSLVKEFQV 240
            NYAS+DSGA +LESS+ ++G GNLLV DKDKY ISPC+D+   VL LSEDI +    +++ EKYSS +K+FQV
Sbjct:   77 NYASKDSGADVLESSANAQGAGNLLVKDKDKYCISPCQDKLRVVLQLSEDITMEKFVLANFEKYSSSMKDFQV 149          
BLAST of mRNA_H-elongata_contig79400.15595.1 vs. uniprot
Match: A0A482SF98_9ARCH (SUN domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SF98_9ARCH)

HSP 1 Score: 87.4 bits (215), Expect = 2.040e-19
Identity = 42/77 (54.55%), Postives = 62/77 (80.52%), Query Frame = 1
Query:   13 NLQNYASRDSGATMLESS-SGSKGMGNLLVDDKDKYAISPCEDRQWAVLGLSEDILVRTIKISSHEKYSSLVKEFQV 240
            NL N+AS  +GA +L+SS S +KG  NLL  DKDKY+ISPC +++W V+GLSEDI + ++ ++++E+YSSLVK+FQ+
Sbjct:   48 NLFNFASATAGAVVLDSSPSSAKGYYNLLNSDKDKYSISPCSEKRWVVIGLSEDIQITSVVLANYERYSSLVKDFQL 124          
BLAST of mRNA_H-elongata_contig79400.15595.1 vs. uniprot
Match: A0A7S3GXC2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXC2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.100e-19
Identity = 42/74 (56.76%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   22 NYASRDSGATMLESSSGS-KGMGNLLVDDKDKYAISPCEDRQWAVLGLSEDILVRTIKISSHEKYSSLVKEFQV 240
            N+AS+ +GA +L+ S  S KG   LL DDKDKY ISPCE+++W V+GLSEDIL+ +I++S++EKYSS +K+FQ+
Sbjct:   49 NFASQSAGAVILDKSPASAKGFHYLLNDDKDKYGISPCEEKKWVVIGLSEDILITSIEVSNYEKYSSTLKDFQL 122          
BLAST of mRNA_H-elongata_contig79400.15595.1 vs. uniprot
Match: A0A7S4IV93_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IV93_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.450e-19
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 1
Query:   25 YASRDSGATMLESSSGSKGMGNLLVDDKDKYAISPCEDRQWAVLGLSEDILVRTIKISSHEKYSSLVKEFQV 240
            YA+++SGA +LE S   KG  NLL  D D+YAI+PCEDR++ V+GLSEDILV+ IK+S++E+YSS  +EFQV
Sbjct:  134 YANKNSGAIILEKSPSMKGTSNLLKSDNDQYAIAPCEDRKFVVVGLSEDILVKQIKLSNYERYSSHPREFQV 205          
BLAST of mRNA_H-elongata_contig79400.15595.1 vs. uniprot
Match: A0A7S2UMH9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UMH9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 9.710e-18
Identity = 40/72 (55.56%), Postives = 57/72 (79.17%), Query Frame = 1
Query:   25 YASRDSGATMLESSSGSKGMGNLLVDDKDKYAISPCEDRQWAVLGLSEDILVRTIKISSHEKYSSLVKEFQV 240
            YA++ SGA +LE S   KG  NLL DD D+YAI+PCED+++ V+GLSEDILV+ + ++++E+YSS VKEF +
Sbjct:  176 YANKSSGALILEKSPTMKGSSNLLNDDMDRYAIAPCEDKKYVVVGLSEDILVKQVFLANYERYSSHVKEFTI 247          
BLAST of mRNA_H-elongata_contig79400.15595.1 vs. uniprot
Match: A0A1V9Z4T1_9STRA (SUN domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4T1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.340e-17
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:   19 QNYASRDSGATMLESSSGSKGMGNLLVDDKDKYAISPCE-DRQWAVLGLSEDILVRTIKISSHEKYSSLVKEFQV 240
            QNYAS+DSGAT+L+ + G+KG  NLLV DKD+Y + PC  D++W V+ LSEDI    I I+++EK+SS+ KEF V
Sbjct:   84 QNYASKDSGATVLDHAPGTKGSVNLLVPDKDRYMLIPCSTDKKWIVISLSEDIHAEAIAIANYEKFSSMTKEFLV 158          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79400.15595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTA6_ECTSI3.750e-3578.75SUN domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A6H5JRG7_9PHAE7.430e-3378.75SUN domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YLS6_9STRA2.940e-3173.33UNC-like C-terminal-domain-containing protein n=1 ... [more]
B8CB42_THAPS5.060e-2056.25SUN domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S2S0K2_9STRA9.930e-2060.27Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A482SF98_9ARCH2.040e-1954.55SUN domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A7S3GXC2_9STRA3.100e-1956.76Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S4IV93_9STRA4.450e-1959.72Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2UMH9_9STRA9.710e-1855.56Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1V9Z4T1_9STRA1.340e-1756.00SUN domain-containing protein n=1 Tax=Achlya hypog... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79400contigH-elongata_contig79400:1903..2151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue2.6e-28
Seed eggNOG ortholog2880.D8LTA6
Preferred nameSUCO
KEGG koko:K01528
KEGG Pathwayko04072,ko04144,ko04721,ko04961,ko05100,map04072,map04144,map04721,map04961,map05100
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005773,GO:0005783,GO:0005789,GO:0005791,GO:0005886,GO:0006457,GO:0006996,GO:0006997,GO:0007049,GO:0007154,GO:0007267,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010712,GO:0010714,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0019222,GO:0022402,GO:0023052,GO:0030154,GO:0030176,GO:0030278,GO:0030587,GO:0031154,GO:0031224,GO:0031225,GO:0031226,GO:0031227,GO:0031967,GO:0031975,GO:0031984,GO:0032502,GO:0032965,GO:0032967,GO:0034103,GO:0034975,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043621,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045165,GO:0045168,GO:0045595,GO:0045597,GO:0045667,GO:0045669,GO:0045778,GO:0046331,GO:0046658,GO:0046850,GO:0048518,GO:0048522,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051239,GO:0051240,GO:0051301,GO:0051703,GO:0051704,GO:0061640,GO:0065007,GO:0071840,GO:0071944,GO:0090702,GO:0098827,GO:0099120,GO:1903047
EggNOG free text desc.positive regulation of collagen biosynthetic process
EggNOG OGsKOG1396@1,KOG1396@2759
EC3.6.5.5
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSUN domain
Ec32 orthologEc-12_005840.1
Exons1
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931198.4882848-CDS-H-elongata_contig79400:1902..21511622931198.4882848-CDS-H-elongata_contig79400:1902..2151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79400 1903..2151 +
1691679737.988162-CDS-H-elongata_contig79400:1902..21511691679737.988162-CDS-H-elongata_contig79400:1902..2151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79400 1903..2151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79400.15595.1prot_H-elongata_contig79400.15595.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79400 1903..2151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79400.15595.1

>prot_H-elongata_contig79400.15595.1 ID=prot_H-elongata_contig79400.15595.1|Name=mRNA_H-elongata_contig79400.15595.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
PRQYNLQNYASRDSGATMLESSSGSKGMGNLLVDDKDKYAISPCEDRQWA
VLGLSEDILVRTIKISSHEKYSSLVKEFQVRK*
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mRNA from alignment at H-elongata_contig79400:1903..2151+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79400.15595.1 ID=mRNA_H-elongata_contig79400.15595.1|Name=mRNA_H-elongata_contig79400.15595.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig79400:1903..2151+ (Himanthalia elongata Himel1 dioecious)
CCCCGCCAGTATAACCTGCAGAACTACGCCAGCAGAGACTCCGGCGCGAC GATGCTCGAGAGTTCCTCGGGTTCTAAAGGAATGGGGAACCTTCTAGTCG ATGACAAGGACAAATACGCTATATCTCCATGCGAAGATAGACAATGGGCC GTGCTGGGGCTTTCGGAGGACATCCTGGTCCGGACAATTAAAATCAGCAG CCATGAAAAATACTCCTCGTTGGTGAAAGAGTTTCAGGTGAGAAAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig79400:1903..2151+

>mRNA_H-elongata_contig79400.15595.1 ID=mRNA_H-elongata_contig79400.15595.1|Name=mRNA_H-elongata_contig79400.15595.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig79400:1903..2151+ (Himanthalia elongata Himel1 dioecious)
CCCCGCCAGTATAACCTGCAGAACTACGCCAGCAGAGACTCCGGCGCGAC
GATGCTCGAGAGTTCCTCGGGTTCTAAAGGAATGGGGAACCTTCTAGTCG
ATGACAAGGACAAATACGCTATATCTCCATGCGAAGATAGACAATGGGCC
GTGCTGGGGCTTTCGGAGGACATCCTGGTCCGGACAATTAAAATCAGCAG
CCATGAAAAATACTCCTCGTTGGTGAAAGAGTTTCAGGTGAGAAAATGAC
CCCGCCAGTATAACCTGCAGAACTACGCCAGCAGAGACTCCGGCGCGACG
ATGCTCGAGAGTTCCTCGGGTTCTAAAGGAATGGGGAACCTTCTAGTCGA
TGACAAGGACAAATACGCTATATCTCCATGCGAAGATAGACAATGGGCCG
TGCTGGGGCTTTCGGAGGACATCCTGGTCCGGACAATTAAAATCAGCAGC
CATGAAAAATACTCCTCGTTGGTGAAAGAGTTTCAGGTGAGAAAATGA
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