mRNA_H-elongata_contig79297.15588.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79297.15588.1
Unique NamemRNA_H-elongata_contig79297.15588.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: D8LI07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI07_ECTSI)

HSP 1 Score: 374 bits (961), Expect = 2.240e-114
Identity = 221/352 (62.78%), Postives = 252/352 (71.59%), Query Frame = 1
Query:    1 HTYCLLCSNEGDHIGYSLGLDLFRVAMGVERYAIHRGITPSERWDNDHESPTDHREATARNPQHENIEWDGE--IYWERGSSGVDCELLVAGSYLPAHRVVLARRSHVLESMIVQEIRP--SGDGGEGSA---PLQLLLPDLRFDVARALLEFLYTGELRRTFDLSSPLPYDLRAAAKSYGVPRLEALCTEKISLGADPGYVA-SVGSVQAPPPPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQM------VETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGVLPESSAVSVLEDLVAADRYRLLDMKRVCQSMVRLSIDNCLQ 1014
            H + LL    GD IGY+LG+DLFR AMG ER+ +  G   SER                R+ +  +++ DGE  + W RG  GVDCELLVAGSYL AHRVVLARRS VL  MI QE RP  SGD G+      PLQLLLPD+RFDVARALLEFLYTGELRR+ DL SPLPYDLRAAAKSYGV RLE LCTE ISLGADPG      G  +  PPP+LA D+G ALG MEHADVKF+AGGRPIYAHRA+L+C+SEYF+AMFRFRDQM        +G     G   A+ EIVVPDSY+GFVRLLLFLY+ GVLP+++  SVLEDLV ADRYRLL MK V QSMVRL+  +CLQ
Sbjct: 1525 HAFALLA---GDRIGYTLGMDLFRAAMGTERH-LPGGPASSER-------------GVLRSGEG-SVDEDGEGAVGWARG--GVDCELLVAGSYLYAHRVVLARRSPVLRDMIAQEERPAISGDDGDDDGLTPPLQLLLPDIRFDVARALLEFLYTGELRRSLDLDSPLPYDLRAAAKSYGVSRLEVLCTEAISLGADPGEGGPDAGWGEVVPPPSLAGDLGEALGTMEHADVKFVAGGRPIYAHRAVLACQSEYFAAMFRFRDQMRRGAADTSSGRDEHGGHSTAMAEIVVPDSYAGFVRLLLFLYT-GVLPDANPESVLEDLVCADRYRLLGMKSVSQSMVRLAAGSCLQ 1855          
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: A0A6H5L4P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4P8_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 4.900e-75
Identity = 161/297 (54.21%), Postives = 180/297 (60.61%), Query Frame = 1
Query:    1 HTYCLLCSNEGDHIGYSLGLDLFRVAMGVERY------AIHRGITPSERWDNDHESPTDHREATARNPQHENIEWDGEIYWERGSSGVDCELLVAGSYLPAHRVVLARRSHVLESMIVQEIRPSGDGGEG-----SAPLQLLLPDLRFDVARALLEFLYTGELRRTFDLSSPLPYDLRAAAKSYGVPRLEALCTEKISLGADPGYV---ASVGSV----------------------------QAPPPPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFR 765
            H + LL    GD IGY+LG+DLFR AMG ER+      +  RG+  S     D E                    +G + W RG  GVDCELLVAGSYL AHRVVLARRS         E RP+ +G +G     + PLQLLLPD+RFDVARALLEFLYTGELR + DL SPLPYDLRAAAKSYGV RLEALCTE ISLG DPG     A  G V                            Q  PPP+LA DIG ALG MEHADVKF+AGGRPIYAHRA+LSC+SEYF+AM RFR
Sbjct:  283 HVFVLLA---GDRIGYTLGMDLFRTAMGTERHLPGDPASSERGVLRSGEGSVDGER-------------------EGAVGWARG--GVDCELLVAGSYLHAHRVVLARRS--------PEERPAINGDDGGDDGLTPPLQLLLPDIRFDVARALLEFLYTGELRSSLDLDSPLPYDLRAAAKSYGVTRLEALCTEAISLGGDPGEGGPDAGWGEVGDGRINCFEALSTVLKPKPSATMFGTPFQVVPPPSLAGDIGEALGTMEHADVKFVAGGRPIYAHRAVLSCQSEYFAAMLRFR 547          
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: K3X898_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X898_GLOUD)

HSP 1 Score: 137 bits (346), Expect = 2.340e-32
Identity = 102/290 (35.17%), Postives = 147/290 (50.69%), Query Frame = 1
Query:  247 DCELLVAGSYLPAHRVVLARRSHVLESMIVQEIRPS--------GDGGEGSAPLQLLLPDLRFDVARALLEFLYTGELRRTFDLSSPLPYDLRAAAKSYGVPRLEALCTEKISL------GADPGYVASV------GSVQAPPPPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYS--AGVLPES-------------SAVSVLEDLVAADRYRLLDMKRVCQSMVRLSIDNCL 1011
            D  LLV+G  L AH+ +LARRS VL  +I+ E R          G G E S  ++LLLP LR+DVA+ LLEF+YT       D  S L  D+  AA+++ +P LE +C +   +      G +P     V      G V+     TL  D+  ALG    +D   +A G  I  HR +L  RSEYF A+  F  +        + GG++    I V +SY G +R+L F+Y+  A VLP S             +   ++EDL+AAD+Y L   KR+C+  + +++ NCL
Sbjct:  455 DIALLVSGKRLFAHQFLLARRSRVLRDLILDEQRNQYASSSTGQGSGNEQSTVMELLLPQLRYDVAKILLEFMYTDNFSAKLDPQSYLIRDVLRAAQTFELPSLETICRDIFDVSSAFGTGIEPFPSKEVEILPEDGEVRKLQ--TLNHDLHFALGDATFSDTTIVAEGHEIAVHRCVLIARSEYFRALLGFHVK--------QHGGQEQKKVIHVDESYLGMLRVLKFIYNGHATVLPHSRDGNAEPNEDPSATTEQLIEDLIAADKYGLARFKRLCEHSIHVNVANCL 734          
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: A0A7S2PMK6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PMK6_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.120e-29
Identity = 91/257 (35.41%), Postives = 141/257 (54.86%), Query Frame = 1
Query:  247 DCELLVAGSYLPAHRVVLARRSHVLESMIVQEIRPSGDGGEGSAPLQLLLPDLRFDVARALLEFLYTGELRRTFDLS--SPLPYDLRAAAKSYGVPRLEALCTEKISLGADPGYVASVGSVQAPPPPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGVLPESSAVSVLEDLVAADRYRLLDMKRVCQSMVRLSIDNCL 1011
            DC L+VAG  L  H+VVL  RS   + M+  E RP+    E S  ++LLLPDL ++V   +LEFLYT ++  TF L+  SP+  DL  AA+ + +P L ++C + + +  D        +       TL++D+  AL   + AD+KF+  G  IYAHR +LS RS +F  +F   D +     K E    D +  I +P+S    +R+L ++Y+  V    S V   ED++ A R++LLDMK   +S + ++ +N L
Sbjct:  175 DCVLIVAGRRLFCHKVVLHYRSEKFKEMLELEDRPT----EKSELIELLLPDLGYEVGLCVLEFLYTDDV--TFPLTPLSPITADLLRAAEKFDLPCLASICRKILDVYRDQPEAQDTKNNNYT---TLSSDLERALNDNQWADIKFVVSGTSIYAHRCILSLRSPFFRELF---DNVQR--QKIEENKVDELDVIKLPESLPCVLRMLSYVYTGRVASNLSEVGRREDILIAHRFQLLDMKHQSESEIEVTPENSL 417          
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: A0A8J5IUZ0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IUZ0_9STRA)

HSP 1 Score: 128 bits (321), Expect = 5.240e-29
Identity = 108/307 (35.18%), Postives = 151/307 (49.19%), Query Frame = 1
Query:  232 GSSGVDCELLVAGSYLPAHRVVLARRSHVLESMIVQE-------IRPSGDGGEGSAPLQLLLPDLRFDVARALLEFLYTGELRRTFDLSSP-LPYDLRAAAKSYGVPRLEALCTEKISLGADPGYVASVGSVQAPPPP----------------------------TLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGV-LPE-------SSAVS--VLEDLVAADRYRLLDMKRVCQSMVRLSIDNCLQ 1014
            G +G D  L+V+G  LPAH+++LA+RS VL  +I+ E       +  S     G+   +LLLP LR DVAR LLEF+YT         +S  L +D+  AAK Y +P L  LC +++       + AS  S+   PP                             TL  D+  AL     AD   IA GR I  HR +L  RSEYF A+  F  ++ E  +      E  +  + V DSY+G VR+L F+Y   V LP+        + VS  +LEDLVAAD+Y L  MKR+C+  + ++  NCL+
Sbjct:  408 GIAGADLVLVVSGQRLPAHKLLLAQRSPVLRELILDEEQQQQNRLTTSESDKFGTETTELLLPTLRLDVARLLLEFIYTDNFTLEVSKNSYYLVHDVLRAAKLYKLPSLVLLCRQRL-------FSASPSSLFGSPPEIEIADDELSDTSSEEDEDESEALDRSTRTLNDDMKFALSDDVWADTVLIAEGRRIPVHRCMLIARSEYFRAVLAFH-RLAENEVT-----ERKMAVVNVEDSYAGIVRVLRFIYYDQVALPQLKRTGETDAEVSDQLLEDLVAADKYGLERMKRLCEHAIGVTAANCLE 701          
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: A0A329T2Q8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T2Q8_9STRA)

HSP 1 Score: 128 bits (321), Expect = 6.050e-29
Identity = 108/307 (35.18%), Postives = 152/307 (49.51%), Query Frame = 1
Query:  232 GSSGVDCELLVAGSYLPAHRVVLARRSHVLESMIVQE-------IRPSGDGGEGSAPLQLLLPDLRFDVARALLEFLYTGELRRTFDLSSP-LPYDLRAAAKSYGVPRLEALCTEKISLGADPGYVASVGSVQAPPPP----------------------------TLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGV-LPE-------SSAVS--VLEDLVAADRYRLLDMKRVCQSMVRLSIDNCLQ 1014
            G +G D  L+V+G  LPAH+++LA+RS VL  +I+ E       +  S     G+A  +LLLP LR DVA+ LLEF+YT         +S  L +D+  AAK Y +P L  LC +++       + AS  S+   PP                             TL  D+  AL     AD   IA GR I  HR +L  RSEYF A+  F  ++ E  +      E  +  + V DSY+G VR+L F+Y   V LP+        + VS  +LEDLVAAD+Y L  MKR+C+  + ++  NCL+
Sbjct:  840 GIAGADLVLVVSGQRLPAHKLLLAQRSPVLRELILDEEQQQQDRLTTSESDKFGTATTELLLPTLRLDVAQLLLEFIYTDNFTLEVSKNSYYLVHDVLRAAKLYKLPSLVLLCRQRL-------FSASPSSLFGSPPEIEIADDELSDTSSEEDEDESEALDRSTRTLNGDMKFALSDDVWADTVLIAEGRRIPVHRCMLIARSEYFRAVLAFH-RLAENEVT-----ERKMAVVNVEDSYAGIVRVLRFIYYDQVALPQLKRTGDTDAEVSDQLLEDLVAADKYGLERMKRLCEHAIGVTAANCLE 1133          
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: A0A662X905_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X905_9STRA)

HSP 1 Score: 127 bits (318), Expect = 7.470e-29
Identity = 109/325 (33.54%), Postives = 152/325 (46.77%), Query Frame = 1
Query:  247 DCELLVAGSYLPAHRVVLARRSHVLESMIVQE-------IRPSGDGGEG-----SAPLQLLLPDLRFDVARALLEFLYTGELRRTFDL--SSPLPYDLRAAAKSYGVPRLEALCTEKISLGA---------------------------------DPGYVASVGSVQAPPPPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGV-LP---------------------ESSAVSVLEDLVAADRYRLLDMKRVCQSMVRLSIDNCLQ 1014
            D  L+V+G  L AH+++L RRS VL  +I++E       +R   DG        S+P++LLLP LR DVARAL+EF+YT  L    +   SS L  D+  AA+ Y VP L  LC E++   +                                 D   +   G+ +     TL  D+  AL     ADV  +A GR I AHR +L  RSEYF A+F F  Q   T       G    T + V +SY G +R+L F+Y   V LP                     E ++  +LEDL+AAD+Y L  MKR+C+  V +++ NCL+
Sbjct:  200 DIVLIVSGQRLAAHKLLLGRRSPVLRELILEEEQQQNQLVRRETDGELAPSSTISSPMELLLPQLRVDVARALVEFIYTDNLSPDLNPQGSSYLIRDVLRAARIYKVPNLVQLCRERLFSASPVSLFDTPIELEEGDESEEDESSATEGKEFDDDDEDSIPGTGAAR-----TLNDDMKLALTDTAWADVVLVAEGRAIPAHRCMLVARSEYFRAVFAF--QNASTHSTDGIHGSGEPTVVNVEESYDGLMRVLHFIYHDQVTLPLAKSKSEAYDGKESSDDGEEAEEASDQLLEDLLAADKYGLERMKRLCEHAVCVTVVNCLE 517          
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: D0MVD1_PHYIT (Transmembrane protein, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MVD1_PHYIT)

HSP 1 Score: 125 bits (313), Expect = 6.020e-28
Identity = 107/307 (34.85%), Postives = 151/307 (49.19%), Query Frame = 1
Query:  232 GSSGVDCELLVAGSYLPAHRVVLARRSHVLESMIV-----QEIRPSGDGGEG-----SAPLQLLLPDLRFDVARALLEFLYTGELRRTFDLSSP---LPYDLRAAAKSYGVPRLEALCTEKISLGADPG--YVASVGSVQAPP---------------------PPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGV-LPESS---------AVSVLEDLVAADRYRLLDMKRVCQSMVRLSIDNCLQ 1014
            G +G D  L+V+G  LPAH+++LA+RS VL  +I+     Q+ R +    +      S  ++LLLP LR DVAR LLEF+YT     T D+S     L +D+  AAK Y +P L  LC +++   A P   + AS  S +                        P  L  D+  AL     AD   IA GR I  HR +L  RSEYF A+  F         K +      +  + V DSY+  VR+L F+Y   V LP+S          +  +LEDLVAAD+Y L  +KR+C+  +R++  NCL+
Sbjct:  437 GIAGADLVLVVSGQRLPAHKLLLAQRSPVLRELILDEEQQQQNRITASDSDTYKTSVSETMELLLPALRADVARLLLEFIYTDNF--TLDVSKSSYYLVHDVLRAAKLYKLPSLVLLCRQRL-FSASPSSLFGASASSPEIAKDELSDSNSEGDEDELETLRRSPRMLNDDMKFALSDAVWADTVLIAEGRRIPVHRCMLIARSEYFRAVLAFHRLAESEATKRK------MAVVNVEDSYAAIVRVLRFIYYDQVALPQSKRNGETDTDVSDQLLEDLVAADKYGLERLKRLCEHAIRVTAANCLE 734          
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: A0A662Y5Y8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5Y8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 8.340e-28
Identity = 111/320 (34.69%), Postives = 149/320 (46.56%), Query Frame = 1
Query:  247 DCELLVAGSYLPAHRVVLARRSHVLESMIVQE-------IRPSGDGGEG-----SAPLQLLLPDLRFDVARALLEFLYTGELRRTFDL--SSPLPYDLRAAAKSYGVPRLEALCTEKI------SLGADPGYVASVGSVQ----------------------APPPPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGV-LP---------------------ESSAVSVLEDLVAADRYRLLDMKRVCQSMVRLSIDNCLQ 1014
            D  L+V+G  L AH+++LARRS VL  +I+ E       +R   DG        S+P++LLLP LR DVARAL+EF+YT  L    +   SS L  D+  AA+ Y VP L  +C E++      SL   P  +   G  +                      A    TL  D+  AL      D   +A GR I  HR +L  RSEYF A+F F  Q   T       G    T + V DSY G VR+L F+Y   V LP                     E ++  +LEDL+AAD+Y L  MKR+C+  V ++  NCL+
Sbjct:  489 DIVLIVSGQRLAAHKLLLARRSPVLRELILDEEQQQNQLVRNETDGESTPSSTISSPMELLLPQLRVDVARALVEFIYTDNLSPDLNPQGSSYLIRDVLRAARIYKVPSLAQICRERLFSVSPSSLFEIPVELEEEGEGEEDEAFALEDRAFNDDDEDSIPTAGAARTLNDDMKLALSDTAWTDAILVAEGRTIPVHRCMLVARSEYFRAVFAF--QNASTHAVDGVHGSGEPTVVNVEDSYDGLVRVLHFIYHDQVTLPLAKSKSEAYRGKEDSDDGEEAEDASDQLLEDLLAADKYGLDRMKRLCEHAVCVTAANCLE 806          
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Match: A0A8K1C934_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C934_PYTOL)

HSP 1 Score: 124 bits (311), Expect = 8.850e-28
Identity = 99/277 (35.74%), Postives = 138/277 (49.82%), Query Frame = 1
Query:  247 DCELLVAGSYLPAHRVVLARRSHVLESMIVQEIRPSGDGGEGSAPLQLLLPDLRFDVARALLEFLYTGELRRTFDLSSPLPYDLRAAAKSYGVPRLEALCTEKISLGADPGYVASVGSVQAPPPP---TLATDIGGALGLMEH---ADVKFIAGGRPIYAHRALLSCRSEYFSAMFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYS---AGVLP-------ESSAV-------SVLEDLVAADRYRLLDMKRVCQSMVRLSIDNC 1008
            D  L+V G  + AH+ +LARRS V    I+ E R   DG E     +L+L  LR DVAR LLEF+YT  L  T D  S L  DL  AA+ Y +  L  +C E++   A   Y  S G  +  PP    +L  D+    G  EH   +D+K +A  RPI  HR +L  RSEYF A+F F+ Q   +              I V +SY   +R+L F+Y+     V P       +  A+        +LEDL+AAD+Y L  MK +C+  + ++ +NC
Sbjct:  271 DLLLIVDGRGMWAHKFILARRSPVFCEQILMEERTGLDGDEPDVT-ELVLSQLRLDVARLLLEFIYTDNLTLTLDPLSYLCRDLLRAAEQYELESLAVICRERLQHAA---YDGSSGVAELFPPAVPSSLRQDLAFTGG--EHTPWSDLKILAEDRPIAVHRCMLMARSEYFRALFAFQRQQQTSNSSKRV--------ITVEESYRSMLRVLQFIYNDELTSVRPTRRPDDDDDEAMYQVDRTEELLEDLMAADKYGLARMKHLCEHHIVVTPENC 533          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79297.15588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI07_ECTSI2.240e-11462.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4P8_9PHAE4.900e-7554.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K3X898_GLOUD2.340e-3235.17Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S2PMK6_9STRA1.120e-2935.41Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A8J5IUZ0_9STRA5.240e-2935.18Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A329T2Q8_9STRA6.050e-2935.18Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A662X905_9STRA7.470e-2933.54Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
D0MVD1_PHYIT6.020e-2834.85Transmembrane protein, putative n=2 Tax=Phytophtho... [more]
A0A662Y5Y8_9STRA8.340e-2834.69Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A8K1C934_PYTOL8.850e-2835.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79297contigH-elongata_contig79297:412..2659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog65071.PYU1_T013447
KEGG koko:K03457,ko:K10523,ko:K16075
KEGG TC1.A.35.5,2.A.39
KEGG Pathwayko04340,ko04341,map04340,map04341
KEGG ModuleM00384
EggNOG free text desc.Transmembrane protein. Source PGD
EggNOG OGs1MC2M@121069,COG5184@1,KOG1426@2759,KOG1987@1,KOG1987@2759
COG Functional cat.DZ
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko04121
Hectar predicted targeting categoryother localisation
Exons5
Model size1014
Cds size1014
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79297.15588.1prot_H-elongata_contig79297.15588.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79297 412..2659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.64364-CDS-H-elongata_contig79297:411..7501622931197.64364-CDS-H-elongata_contig79297:411..750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79297 412..750 +
1691679737.684442-CDS-H-elongata_contig79297:411..7501691679737.684442-CDS-H-elongata_contig79297:411..750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79297 412..750 +
1622931197.657826-CDS-H-elongata_contig79297:1006..12461622931197.657826-CDS-H-elongata_contig79297:1006..1246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79297 1007..1246 +
1691679737.6979907-CDS-H-elongata_contig79297:1006..12461691679737.6979907-CDS-H-elongata_contig79297:1006..1246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79297 1007..1246 +
1622931197.678251-CDS-H-elongata_contig79297:1518..17031622931197.678251-CDS-H-elongata_contig79297:1518..1703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79297 1519..1703 +
1691679737.7131474-CDS-H-elongata_contig79297:1518..17031691679737.7131474-CDS-H-elongata_contig79297:1518..1703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79297 1519..1703 +
1622931197.7824357-CDS-H-elongata_contig79297:2156..22751622931197.7824357-CDS-H-elongata_contig79297:2156..2275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79297 2157..2275 +
1691679737.7223313-CDS-H-elongata_contig79297:2156..22751691679737.7223313-CDS-H-elongata_contig79297:2156..2275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79297 2157..2275 +
1622931197.8285787-CDS-H-elongata_contig79297:2528..26591622931197.8285787-CDS-H-elongata_contig79297:2528..2659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79297 2529..2659 +
1691679737.7349248-CDS-H-elongata_contig79297:2528..26591691679737.7349248-CDS-H-elongata_contig79297:2528..2659Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79297 2529..2659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79297.15588.1

>prot_H-elongata_contig79297.15588.1 ID=prot_H-elongata_contig79297.15588.1|Name=mRNA_H-elongata_contig79297.15588.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=338bp
HTYCLLCSNEGDHIGYSLGLDLFRVAMGVERYAIHRGITPSERWDNDHES
PTDHREATARNPQHENIEWDGEIYWERGSSGVDCELLVAGSYLPAHRVVL
ARRSHVLESMIVQEIRPSGDGGEGSAPLQLLLPDLRFDVARALLEFLYTG
ELRRTFDLSSPLPYDLRAAAKSYGVPRLEALCTEKISLGADPGYVASVGS
VQAPPPPTLATDIGGALGLMEHADVKFIAGGRPIYAHRALLSCRSEYFSA
MFRFRDQMVETGMKGETGGEDAITEIVVPDSYSGFVRLLLFLYSAGVLPE
SSAVSVLEDLVAADRYRLLDMKRVCQSMVRLSIDNCLQ
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mRNA from alignment at H-elongata_contig79297:412..2659+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79297.15588.1 ID=mRNA_H-elongata_contig79297.15588.1|Name=mRNA_H-elongata_contig79297.15588.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2248bp|location=Sequence derived from alignment at H-elongata_contig79297:412..2659+ (Himanthalia elongata Himel1 dioecious)
CATACATACTGCCTTCTCTGCTCGAACGAAGGCGATCACATAGGGTACTC TCTTGGGCTTGACCTTTTCCGCGTGGCGATGGGTGTCGAGCGCTACGCGA TCCACAGAGGCATAACGCCTTCAGAACGTTGGGACAACGACCATGAAAGT CCCACGGACCACCGTGAGGCCACGGCAAGAAACCCACAACACGAAAATAT CGAATGGGATGGCGAAATTTATTGGGAAAGGGGAAGTAGTGGAGTGGACT GCGAGCTGCTGGTGGCAGGGAGCTATCTTCCCGCGCATCGTGTAGTCCTC GCGAGACGATCACACGTCCTCGAGAGCATGATCGTGCAGGTACGCGGACG AAACCCTTTTGACGAATAGACAACGGCCGAACCACCGAAGCGCATAGCAT TATTTTTCTATCATCACTGATCAAGGTAATTCTAATACGAAGTCCGCTTT TTTCCTACAGCAGTAGCGTGGACTATTATGGTGTTGACGCTGTGTGGTGT TTAGGTATTGCTTCCCGACCAAAATATGCCATCGTCTGATGCCTGGTAAT CGGTTGCTTGAAATACGTTCGTATGTGGCCCTTAAATGGAGCTAGGAGAT ACGCCCTAGTGGAGACGGTGGGGAGGGCAGCGCACCTCTGCAACTCCTAC TACCCGACCTTCGATTTGACGTCGCCCGCGCCCTACTGGAGTTCCTGTAC ACTGGAGAGTTACGCCGGACGTTTGACCTCAGCTCCCCGCTGCCTTACGA CCTCCGCGCGGCGGCCAAATCGTACGGAGTTCCACGCCTGGAGGCGCTGT GCACGGAGAAGATATCTCTAGGCGCTGACCCCGGGGTGAAAGAAGAATGG AATTACCATGTGAGTGAGACGGAGATCACGCCGGGGGGCGTCGGTTGCTT GCCGACCTTTCTATGTTATAGTGTAATTAGCAGCAAATATGTGCGCAATA TATAATTCACCGTTAAACGAGCATCAGAACTCCGGGGAAAAGAGAAATGT GGCGCCGTATCTACGCAACAGGTACTCCACAGAGCTCTGGGCGTAGGATC GTAGCCAAGTCCTCTATTTTACCAAAATATATCCCGCAAGGTATACACAT TCCGAAGTACGTTGCTTCTGTGGGATCCGTTCAGGCACCACCGCCGCCGA CTCTCGCCACCGACATCGGCGGTGCGCTTGGATTGATGGAGCACGCGGAC GTCAAATTTATCGCGGGCGGTAGGCCCATCTACGCCCACCGAGCGTTACT GTCTTGCAGAAGCGAATACTTCTCTGCCATGTTTCGCTTCAGGTATCGAT TCGTCCTGGATTACGATGCCACGAGGTTTCTTCGTTTTCACTTCGTTCAC AAAGTGCGGGTTGCATCGGGGTAGCTTGTGTCCCCGAATGATGGAATTAA CAAGGAGGAGGGGAGAGGGACCAAATAATCTGTTCCCGGAGCATTCAGGA AGGGGTGGTAACCAAGCGGCCCCTCTAGGGGATGGGGGACTGCTTATGCC TTTGCCTGATAACACTAGTGTGCCCTGAACATAATCCATTGCGCTTTGCA CGCATACATCCTCCAGAGGATGCTTCGGTTATGTTCACCCGATCTCGGAG ACAGATTCGTCAGCCCCTTCCATTCCCACCCACCCCATCCCCTCGAATCA CTTGAACCCGAACCATAACCTACCTTTCTAAACTGAAGCTTACACCTTCT CCCCGACGTCCCACTTAATAACTTATAACTTGTCTCTATGAATAGGGATC AGATGGTTGAGACTGGGATGAAAGGGGAAACAGGGGGTGAAGATGCCATC ACGGAGATCGTTGTGCCAGACTCGTACTCGGGATTCGTTCGTCTCTTGCT TTTTCTCTACTCAGGTGGATATAATGCCGTTGATGTCGATCACACAATTC GCTCATTGCTGGTGATCTGGGAAGATTCGATCCCTGCGGTCGCCTCGGCT GCCGCCTCCAAAATACTCATCCAGGGCCAGAGTATCACACACACCACGGG TGGCTGTATTACATGTCACATATAGAACAGGAAATCCCTAGACGGCGCTC CTCTCACGCAATCAGAAGCGGCATAAAACCTACAAGTAAACCGCTGACGA ATGTTTGACCCACGTAGCAGGCGTTCTGCCAGAGAGCAGCGCAGTTTCCG TGTTGGAAGACCTCGTCGCCGCCGATCGCTACCGGCTGCTGGACATGAAA CGCGTCTGCCAGAGCATGGTTCGGCTAAGCATCGATAACTGCTTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig79297:412..2659+

>mRNA_H-elongata_contig79297.15588.1 ID=mRNA_H-elongata_contig79297.15588.1|Name=mRNA_H-elongata_contig79297.15588.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2028bp|location=Sequence derived from alignment at H-elongata_contig79297:412..2659+ (Himanthalia elongata Himel1 dioecious)
CATACATACTGCCTTCTCTGCTCGAACGAAGGCGATCACATAGGGTACTC
TCTTGGGCTTGACCTTTTCCGCGTGGCGATGGGTGTCGAGCGCTACGCGA
TCCACAGAGGCATAACGCCTTCAGAACGTTGGGACAACGACCATGAAAGT
CCCACGGACCACCGTGAGGCCACGGCAAGAAACCCACAACACGAAAATAT
CGAATGGGATGGCGAAATTTATTGGGAAAGGGGAAGTAGTGGAGTGGACT
GCGAGCTGCTGGTGGCAGGGAGCTATCTTCCCGCGCATCGTGTAGTCCTC
GCGAGACGATCACACGTCCTCGAGAGCATGATCGTGCAGCATACATACTG
CCTTCTCTGCTCGAACGAAGGCGATCACATAGGGTACTCTCTTGGGCTTG
ACCTTTTCCGCGTGGCGATGGGTGTCGAGCGCTACGCGATCCACAGAGGC
ATAACGCCTTCAGAACGTTGGGACAACGACCATGAAAGTCCCACGGACCA
CCGTGAGGCCACGGCAAGAAACCCACAACACGAAAATATCGAATGGGATG
GCGAAATTTATTGGGAAAGGGGAAGTAGTGGAGTGGACTGCGAGCTGCTG
GTGGCAGGGAGCTATCTTCCCGCGCATCGTGTAGTCCTCGCGAGACGATC
ACACGTCCTCGAGAGCATGATCGTGCAGGAGATACGCCCTAGTGGAGACG
GTGGGGAGGGCAGCGCACCTCTGCAACTCCTACTACCCGACCTTCGATTT
GACGTCGCCCGCGCCCTACTGGAGTTCCTGTACACTGGAGAGTTACGCCG
GACGTTTGACCTCAGCTCCCCGCTGCCTTACGACCTCCGCGCGGCGGCCA
AATCGTACGGAGTTCCACGCCTGGAGGCGCTGTGCACGGAGAAGATATCT
CTAGGCGCTGACCCCGGGGAGATACGCCCTAGTGGAGACGGTGGGGAGGG
CAGCGCACCTCTGCAACTCCTACTACCCGACCTTCGATTTGACGTCGCCC
GCGCCCTACTGGAGTTCCTGTACACTGGAGAGTTACGCCGGACGTTTGAC
CTCAGCTCCCCGCTGCCTTACGACCTCCGCGCGGCGGCCAAATCGTACGG
AGTTCCACGCCTGGAGGCGCTGTGCACGGAGAAGATATCTCTAGGCGCTG
ACCCCGGGTACGTTGCTTCTGTGGGATCCGTTCAGGCACCACCGCCGCCG
ACTCTCGCCACCGACATCGGCGGTGCGCTTGGATTGATGGAGCACGCGGA
CGTCAAATTTATCGCGGGCGGTAGGCCCATCTACGCCCACCGAGCGTTAC
TGTCTTGCAGAAGCGAATACTTCTCTGCCATGTTTCGCTTCAGTACGTTG
CTTCTGTGGGATCCGTTCAGGCACCACCGCCGCCGACTCTCGCCACCGAC
ATCGGCGGTGCGCTTGGATTGATGGAGCACGCGGACGTCAAATTTATCGC
GGGCGGTAGGCCCATCTACGCCCACCGAGCGTTACTGTCTTGCAGAAGCG
AATACTTCTCTGCCATGTTTCGCTTCAGGGATCAGATGGTTGAGACTGGG
ATGAAAGGGGAAACAGGGGGTGAAGATGCCATCACGGAGATCGTTGTGCC
AGACTCGTACTCGGGATTCGTTCGTCTCTTGCTTTTTCTCTACTCAGGGA
TCAGATGGTTGAGACTGGGATGAAAGGGGAAACAGGGGGTGAAGATGCCA
TCACGGAGATCGTTGTGCCAGACTCGTACTCGGGATTCGTTCGTCTCTTG
CTTTTTCTCTACTCAGCAGGCGTTCTGCCAGAGAGCAGCGCAGTTTCCGT
GTTGGAAGACCTCGTCGCCGCCGATCGCTACCGGCTGCTGGACATGAAAC
GCGTCTGCCAGAGCATGGTTCGGCTAAGCATCGATAACTGCTTGCAGCAG
GCGTTCTGCCAGAGAGCAGCGCAGTTTCCGTGTTGGAAGACCTCGTCGCC
GCCGATCGCTACCGGCTGCTGGACATGAAACGCGTCTGCCAGAGCATGGT
TCGGCTAAGCATCGATAACTGCTTGCAG
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