mRNA_H-elongata_contig79002.15563.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig79002.15563.1
Unique NamemRNA_H-elongata_contig79002.15563.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig79002.15563.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.570e-16
Identity = 43/78 (55.13%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   13 LFVTAHKVTLYAQEIKWWGKLYFGTDVWHNPECIRELFEMRWTGTVGELMQFLQAANWMWLSLPNMAEVVSPLRALLE 246
            L+V AHK T +   I W GK+Y    V H+PE +  L  MR   T GELMQFLQA NW+  SLP MAEVV PLR  LE
Sbjct:  939 LYVAAHKCTFFETSITWCGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLRVFLE 1016
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BLAST of mRNA_H-elongata_contig79002.15563.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 9.960e-16
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:   13 LFVTAHKVTLYAQEIKWWGKLYFGTDVWHNPECIRELFEMRWTGTVGELMQFLQAANWMWLSLPNMAEVVSPLRALLE 246
            +F  AH    +  +IKW GK+Y G  V H+P  ++ L +MR   T GELMQ LQA NW+  SLP +AEVV PLR LLE
Sbjct:  651 IFAAAHMCLFFDTKIKWCGKVYSGGQVAHDPARLQGLADMRRPETAGELMQVLQAVNWLRTSLPRLAEVVEPLRRLLE 728
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BLAST of mRNA_H-elongata_contig79002.15563.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.010e-15
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:   13 LFVTAHKVTLYAQEIKWWGKLYFGTDVWHNPECIRELFEMRWTGTVGELMQFLQAANWMWLSLPNMAEVVSPLRALLE 246
            LFV AHK T Y   +KW GK+Y    + H+ + +  L  +R   T GELMQFLQA NW+  SLP M+E+V+PLR  LE
Sbjct:  841 LFVAAHKCTFYTTSVKWCGKVYSKGVIEHDRDRLSGLANLRRPETAGELMQFLQAVNWLRTSLPRMSEIVAPLREFLE 918
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BLAST of mRNA_H-elongata_contig79002.15563.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.480e-13
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:   13 LFVTAHKVTLYAQEIKWWGKLYFGTDVWHNPECIRELFEMRWTGTVGELMQFLQAANWMWLSLPNMAEVVSPLRALLE 246
            +F  AHK   +  +I+W GK+Y G  V  +PE ++ L +MR   T G+LMQFLQA  W+  SL  +AEV+ P+R LLE
Sbjct:  592 IFAAAHKCPFFDTKIRWCGKVYSGGQVASDPERLQGLTDMRRPETAGKLMQFLQAVKWLRTSLSRLAEVMEPVRTLLE 669
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BLAST of mRNA_H-elongata_contig79002.15563.1 vs. uniprot
Match: A0A225V1C7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V1C7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.390e-10
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:   31 KVTLYAQEIKWWGKLYFGTDVWHNPECIRELFEMRWTGTVGELMQFLQAANWMWLSLPNMAEVVSPLRALLESG 252
            K  L+AQE++W GKL  G  V H+PE +R L  M +  + GEL QFL A NWM  SL + A V  PL+ LL+  
Sbjct:  363 KSCLFAQEVRWCGKLINGDGVQHDPERVRALQAMPFPRSAGELQQFLCATNWMRDSLIDYARVARPLQDLLDDA 436
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BLAST of mRNA_H-elongata_contig79002.15563.1 vs. uniprot
Match: A0A6A4YZL7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YZL7_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.050e-6
Identity = 25/72 (34.72%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:   31 KVTLYAQEIKWWGKLYFGTDVWHNPECIRELFEMRWTGTVGELMQFLQAANWMWLSLPNMAEVVSPLRALLE 246
            K   + ++  W+ K+     + H+P+ ++ LF +    T  +  QF+ A NWM   +PN AE+V PLRALL+
Sbjct:  176 KCDFFLKQATWYRKVISAEGIAHSPDRVQGLFALETPTTGADRQQFVCATNWMRSLIPNCAELVDPLRALLD 247
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig79002.15563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE1.570e-1655.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9E0_9PHAE9.960e-1651.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE1.010e-1550.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L028_9PHAE1.480e-1346.15CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A225V1C7_9STRA1.390e-1047.30Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6A4YZL7_9STRA2.050e-634.72Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig79002contigH-elongata_contig79002:1848..2114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog164328.Phyra85429
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QDQ4@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.5888956-CDS-H-elongata_contig79002:1847..21141622931194.5888956-CDS-H-elongata_contig79002:1847..2114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79002 1848..2114 +
1691679736.586772-CDS-H-elongata_contig79002:1847..21141691679736.586772-CDS-H-elongata_contig79002:1847..2114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig79002 1848..2114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig79002.15563.1prot_H-elongata_contig79002.15563.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig79002 1848..2114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig79002.15563.1

>prot_H-elongata_contig79002.15563.1 ID=prot_H-elongata_contig79002.15563.1|Name=mRNA_H-elongata_contig79002.15563.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MKVDLFVTAHKVTLYAQEIKWWGKLYFGTDVWHNPECIRELFEMRWTGTV
GELMQFLQAANWMWLSLPNMAEVVSPLRALLESGRHSH*
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mRNA from alignment at H-elongata_contig79002:1848..2114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig79002.15563.1 ID=mRNA_H-elongata_contig79002.15563.1|Name=mRNA_H-elongata_contig79002.15563.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig79002:1848..2114+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGTCGACCTGTTTGTCACAGCTCACAAAGTTACCCTGTACGCGCA
GGAAATCAAATGGTGGGGCAAGCTGTACTTTGGGACGGACGTGTGGCATA
ATCCTGAGTGTATTCGGGAACTGTTCGAGATGCGTTGGACAGGGACTGTT
GGTGAGTTAATGCAGTTTCTGCAAGCGGCGAACTGGATGTGGCTGTCTTT
GCCTAATATGGCTGAGGTCGTATCGCCTCTAAGGGCATTATTGGAGTCGG
GGCGCCACTCGCACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig79002:1848..2114+

>mRNA_H-elongata_contig79002.15563.1 ID=mRNA_H-elongata_contig79002.15563.1|Name=mRNA_H-elongata_contig79002.15563.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig79002:1848..2114+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGTCGACCTGTTTGTCACAGCTCACAAAGTTACCCTGTACGCGCA
GGAAATCAAATGGTGGGGCAAGCTGTACTTTGGGACGGACGTGTGGCATA
ATCCTGAGTGTATTCGGGAACTGTTCGAGATGCGTTGGACAGGGACTGTT
GGTGAGTTAATGCAGTTTCTGCAAGCGGCGAACTGGATGTGGCTGTCTTT
GCCTAATATGGCTGAGGTCGTATCGCCTCTAAGGGCATTATTGGAGTCGG
GGCGCCACTCGCACTAAATGAAGGTCGACCTGTTTGTCACAGCTCACAAA
GTTACCCTGTACGCGCAGGAAATCAAATGGTGGGGCAAGCTGTACTTTGG
GACGGACGTGTGGCATAATCCTGAGTGTATTCGGGAACTGTTCGAGATGC
GTTGGACAGGGACTGTTGGTGAGTTAATGCAGTTTCTGCAAGCGGCGAAC
TGGATGTGGCTGTCTTTGCCTAATATGGCTGAGGTCGTATCGCCTCTAAG
GGCATTATTGGAGTCGGGGCGCCACTCGCACTAA
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