mRNA_H-elongata_contig78794.15547.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78794.15547.1
Unique NamemRNA_H-elongata_contig78794.15547.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig78794.15547.1 vs. uniprot
Match: D7G1Y8_ECTSI (Similar to mitochondrial import inner membrane translocase,TIM17/22/23-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y8_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 1.340e-66
Identity = 109/165 (66.06%), Postives = 130/165 (78.79%), Query Frame = 1 
Query:   19 PGYLARMKTIVSGSFETAKKAPATLEEAIAVLRGERDVKPDFERATYTVSSAFVGGCVHGWTRGASLAAQYPRHQRSIVRVRSAAGKGVSFALFALIFEGSSAALEALRRKEDFWGGAVGGGLAGMAYGVSGGVASARRGLLYGLWLGRLFGMFRNHVASLREEA 513
            PGY  R+K     +  TAK+AP T+EEA+AV++GER VKPD+ RA  TVS+AF GGC HGW  GA+LAA+YP HQRSIVRVR+ A +G+ FA FALIFEGSSA +EALRRK+DF GG VGG LAGMAYG     A+AR GL YG+WLG +FG+FRNHVASLRE+A
Sbjct:   95 PGYAHRLKAAFLDTVATAKRAPETMEEAMAVIKGERAVKPDYGRAVGTVSAAFAGGCAHGWWHGAALAAKYPPHQRSIVRVRAGARRGLRFATFALIFEGSSAVMEALRRKKDFVGGTVGGALAGMAYGXXXXXAAARSGLFYGVWLGGVFGLFRNHVASLREQA 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78794.15547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1Y8_ECTSI1.340e-6666.06Similar to mitochondrial import inner membrane tra... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78794contigH-elongata_contig78794:686..2940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTim17/22-like protein
Ec32 orthologEc-07_003650.1
Exons4
Model size513
Cds size513
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78794.15547.1prot_H-elongata_contig78794.15547.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78794 686..2940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931192.9188578-CDS-H-elongata_contig78794:685..8561622931192.9188578-CDS-H-elongata_contig78794:685..856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78794 686..856 +
1691679735.9702094-CDS-H-elongata_contig78794:685..8561691679735.9702094-CDS-H-elongata_contig78794:685..856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78794 686..856 +
1622931192.9614718-CDS-H-elongata_contig78794:1036..11821622931192.9614718-CDS-H-elongata_contig78794:1036..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78794 1037..1182 +
1691679735.98008-CDS-H-elongata_contig78794:1036..11821691679735.98008-CDS-H-elongata_contig78794:1036..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78794 1037..1182 +
1622931192.9826014-CDS-H-elongata_contig78794:1529..16241622931192.9826014-CDS-H-elongata_contig78794:1529..1624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78794 1530..1624 +
1691679735.9898052-CDS-H-elongata_contig78794:1529..16241691679735.9898052-CDS-H-elongata_contig78794:1529..1624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78794 1530..1624 +
1622931193.0010114-CDS-H-elongata_contig78794:2839..29401622931193.0010114-CDS-H-elongata_contig78794:2839..2940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78794 2840..2940 +
1691679736.000671-CDS-H-elongata_contig78794:2839..29401691679736.000671-CDS-H-elongata_contig78794:2839..2940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78794 2840..2940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78794.15547.1

>prot_H-elongata_contig78794.15547.1 ID=prot_H-elongata_contig78794.15547.1|Name=mRNA_H-elongata_contig78794.15547.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
MPPTQPPGYLARMKTIVSGSFETAKKAPATLEEAIAVLRGERDVKPDFER
ATYTVSSAFVGGCVHGWTRGASLAAQYPRHQRSIVRVRSAAGKGVSFALF
ALIFEGSSAALEALRRKEDFWGGAVGGGLAGMAYGVSGGVASARRGLLYG
LWLGRLFGMFRNHVASLREEA
back to top

mRNA from alignment at H-elongata_contig78794:686..2940+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78794.15547.1 ID=mRNA_H-elongata_contig78794.15547.1|Name=mRNA_H-elongata_contig78794.15547.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2255bp|location=Sequence derived from alignment at H-elongata_contig78794:686..2940+ (Himanthalia elongata Himel1 dioecious)
ATGCCCCCTACTCAGCCGCCGGGGTACCTGGCCAGGATGAAGACGATTGT
GTCCGGTTCGTTCGAAACGGCAAAGAAGGCACCAGCAACACTTGAGGAGG
CCATCGCGGTGCTTAGGGGTGAAAGGGACGTCAAGCCGGACTTCGAACGA
GCGACTTACACTGTTTCGTCGGTAAGTCGAACTCTTAAAAGTTAAACAAT
CCAGCGGCTCTAGGCGCCCTTCTCCCGCGGTTTCCCTTCATGACAGGACA
TCCACATGGTGATATCCCCGCGCACGTGCTTCACATGTTTATCTACCCCA
ATTGTGATGAATTTTAAAAACTACCGATTATGTTGCTTCTGTTTTACACA
GGCGTTTGTCGGTGGTTGTGTCCACGGCTGGACGCGGGGCGCTTCTCTGG
CGGCGCAGTATCCTCGGCATCAGCGGAGCATCGTGAGGGTGCGGTCGGCG
GCCGGAAAAGGAGTCAGCTTCGCGCTCTTTGCTCTCATTTTCGAGGGGTA
AGCACAGATAAACAGTAAATAATTAGCACGCGCTGCTCTGTTACGCCTCG
AAGATCGACGGAAATCAACGTTTATGTCGGTCGGGAGACGATCGCAGGAA
TTTACGAACTTCTATATTTGGCAGATCAGATAAGCCAATCTCATCGAAGT
AACCTTCATTGTCTGTCATGATATTCTAGTTCAACCGCATGCTGCACGTG
CAATGCGCCTCGAAAGGTTTAGTATAGTACATTACAGTAATTGGGCACGA
GGTAATTTCGTCGGCGAATTGTTGTGGTGCCTTCCGTGCTAAATCTCGTA
ACCGCCGCAAACAAATACCCCAATACCCCGGGATTTTCCGATAGGTCATC
GGCTGCGCTGGAGGCGCTGAGGCGGAAAGAAGATTTTTGGGGAGGCGCTG
TCGGGGGCGGATTGGCGGGAATGGCCTACGGCGTTTCGGGTGAGATTTTA
TCTAGCCCCTCTGGGTGAAAGGTTTTCCACCACCATTCGAGGGATTGTTC
ATGCGTGGAACTGATTGGCAAGGAGACGTCACATTCATAACAATTCACTC
GTGGTGCATGTTGCCATCCTCTATTATTATAATATTAGTGTGTGCACTAC
TGTTAGTAATAAAAAAAAAAAGGTGCAAATTTGTTAACCTGTTAGGGCTT
GTGCTCAAAGGTATTAATAGTAATGTACACATTCGAACCTGACGATAGTT
GTTCCCCTGGATTACACCTCTCACGGTGCTATGAAGGCGTGGATGTTCGG
AGGGTTGGAATGAGTTCATTTATTTTATTTTATTTTATTATAAAAGGTGC
CAATACTCGGGAAATCATCAATCCAGATAGAAAACAAATGGAATTGGGCC
TCTTAAACGATTGCAGGGAAAATTGATGCCGAAAAAAGGCGATGGAACCG
ATGACATGACCCCAAAGGGCAATGCTCGTTCTATCGTAAGCGTGTTCAAA
TGCAAAATGGTGATTCGTCTCCTCGCGGCGTATGTCCAAGACCCTGTTCC
AAGCGACAACAGCCGAAGTACATTACAAAGAGTTCACGGTTCACGGTTTG
CCAATAAAGTGCGCCTGTTTTACGCTCTCTCTCGCGATGAAAACTCTTCG
AAGTGTAAGGTACTAACTACGATTAATAATCGTTTTTTTTTAGTTTTTTT
ATCGTTATATGGAGGAGAAAAAAATCCCGCGAGCCACCTTTGCATCTACA
ATAACTCGCGATCTCCTGCAGATTCCGTGCGGGATTTGCATAGGGTGGTT
CGACGGTAAACAATTGTCAGCTAATTTTTAAGCTTAGAATCGGATGTTCC
TATTTGTGATGACTCCGGTTGGATCGGTGCATTAGGCCCCGCTCGGTGAT
GTTTCTGTTCACCGCGAATCTCGAAAGCAATAGTCACTGGAGACTTGATA
AAAACTGGGTAGTTCGGACTGAGAAATTGGCGCCCTTGACGACCAACGCT
TACGATCAGCCAATCAAAATAACTACAGTACCTCAATTATTTAAACGTAT
TTTTATTTCTCGTTCATGTACGCTCCTATCGGGTTTCTTTTTGAAACACC
CCCCCCCGGTTACCCATGGATCACACCCCTCGAACCTCCGTAAGATGCTA
CGCGCACACCCTTGGACGCTTCTTAGCAAACCTTGTTTTCCTTGAACATC
GCAGGAGGGGTGGCTTCCGCGCGGAGAGGCCTCTTATACGGCTTGTGGCT
AGGGAGACTCTTCGGTATGTTCAGAAACCACGTGGCATCTTTGCGGGAAG
AGGCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig78794:686..2940+

>mRNA_H-elongata_contig78794.15547.1 ID=mRNA_H-elongata_contig78794.15547.1|Name=mRNA_H-elongata_contig78794.15547.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig78794:686..2940+ (Himanthalia elongata Himel1 dioecious)
ATGCCCCCTACTCAGCCGCCGGGGTACCTGGCCAGGATGAAGACGATTGT
GTCCGGTTCGTTCGAAACGGCAAAGAAGGCACCAGCAACACTTGAGGAGG
CCATCGCGGTGCTTAGGGGTGAAAGGGACGTCAAGCCGGACTTCGAACGA
GCGACTTACACTGTTTCGTCGATGCCCCCTACTCAGCCGCCGGGGTACCT
GGCCAGGATGAAGACGATTGTGTCCGGTTCGTTCGAAACGGCAAAGAAGG
CACCAGCAACACTTGAGGAGGCCATCGCGGTGCTTAGGGGTGAAAGGGAC
GTCAAGCCGGACTTCGAACGAGCGACTTACACTGTTTCGTCGGCGTTTGT
CGGTGGTTGTGTCCACGGCTGGACGCGGGGCGCTTCTCTGGCGGCGCAGT
ATCCTCGGCATCAGCGGAGCATCGTGAGGGTGCGGTCGGCGGCCGGAAAA
GGAGTCAGCTTCGCGCTCTTTGCTCTCATTTTCGAGGGGCGTTTGTCGGT
GGTTGTGTCCACGGCTGGACGCGGGGCGCTTCTCTGGCGGCGCAGTATCC
TCGGCATCAGCGGAGCATCGTGAGGGTGCGGTCGGCGGCCGGAAAAGGAG
TCAGCTTCGCGCTCTTTGCTCTCATTTTCGAGGGGTCATCGGCTGCGCTG
GAGGCGCTGAGGCGGAAAGAAGATTTTTGGGGAGGCGCTGTCGGGGGCGG
ATTGGCGGGAATGGCCTACGGCGTTTCGGGTCATCGGCTGCGCTGGAGGC
GCTGAGGCGGAAAGAAGATTTTTGGGGAGGCGCTGTCGGGGGCGGATTGG
CGGGAATGGCCTACGGCGTTTCGGGAGGGGTGGCTTCCGCGCGGAGAGGC
CTCTTATACGGCTTGTGGCTAGGGAGACTCTTCGGTATGTTCAGAAACCA
CGTGGCATCTTTGCGGGAAGAGGCGGAGGGGTGGCTTCCGCGCGGAGAGG
CCTCTTATACGGCTTGTGGCTAGGGAGACTCTTCGGTATGTTCAGAAACC
ACGTGGCATCTTTGCGGGAAGAGGCG
back to top