mRNA_H-elongata_contig7874.15542.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7874.15542.1
Unique NamemRNA_H-elongata_contig7874.15542.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7874.15542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7874contigH-elongata_contig7874:7522..8668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size799
Cds size534
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7874.15542.1prot_H-elongata_contig7874.15542.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7874 7787..8668 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931192.22863-UTR-H-elongata_contig7874:7521..77861622931192.22863-UTR-H-elongata_contig7874:7521..7786Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7874 7522..7786 -
1691679735.6789157-UTR-H-elongata_contig7874:7521..77861691679735.6789157-UTR-H-elongata_contig7874:7521..7786Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7874 7522..7786 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931192.247033-CDS-H-elongata_contig7874:7786..79601622931192.247033-CDS-H-elongata_contig7874:7786..7960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7874 7787..7960 -
1691679735.6883545-CDS-H-elongata_contig7874:7786..79601691679735.6883545-CDS-H-elongata_contig7874:7786..7960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7874 7787..7960 -
1622931192.264464-CDS-H-elongata_contig7874:8308..86681622931192.264464-CDS-H-elongata_contig7874:8308..8668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7874 8309..8668 -
1691679735.700313-CDS-H-elongata_contig7874:8308..86681691679735.700313-CDS-H-elongata_contig7874:8308..8668Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7874 8309..8668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7874.15542.1

>prot_H-elongata_contig7874.15542.1 ID=prot_H-elongata_contig7874.15542.1|Name=mRNA_H-elongata_contig7874.15542.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
LVRGIRGGEVDAEEERTGKSSADGAGKGVYLPDGGGRKRPADLKKPFVPR
GRRRVDDGDGGGGRALSSLVNKRDYYGDPGSDWPPTATTTTKECRKYLSM
ERVPRGGEENNPQRSHEELALYRRSPGVEALLGRTSRRDERAPHVVGNHG
GFWDGGGSSYSEKQQHFEEESQVVTYE*
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mRNA from alignment at H-elongata_contig7874:7522..8668-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7874.15542.1 ID=mRNA_H-elongata_contig7874.15542.1|Name=mRNA_H-elongata_contig7874.15542.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1147bp|location=Sequence derived from alignment at H-elongata_contig7874:7522..8668- (Himanthalia elongata Himel1 dioecious)
CTCGTTCGGGGAATAAGGGGTGGAGAGGTGGATGCGGAGGAAGAACGAAC
GGGGAAATCGAGCGCCGATGGCGCGGGCAAGGGTGTGTATCTGCCCGACG
GCGGTGGCCGAAAACGCCCCGCGGACTTGAAGAAACCCTTTGTCCCTCGT
GGGCGCAGAAGGGTTGACGATGGTGATGGGGGCGGTGGTAGGGCGCTTTC
CAGCTTGGTCAACAAGCGCGATTATTACGGCGATCCGGGGTCGGATTGGC
CGCCGACGGCGACGACGACGACGAAGGAATGCCGGAAATATCTGTCGATG
GAGCGTGTTCCGAGGGGAGGAGAGGAAAACAACCCGCAGCGGAGCCATGA
AGAGCTGGCGGTGAGTGTACATTTCATTGACGTTCTTCCCCTCCTCTCCC
TCACCCCCGACCCGAAATCCTAGGAAAGGGTAATAAAAGCGCTAACGTTT
TTTTGTTCAAAGGTGGACGCCACTCCCTGACTCAGACTTTTGTGCTTGTT
ACGCTTCGTCCCGTAGCAAGATATACATGTTTTATTCCGAAGGAGGGCAG
GAAGGGGTTCCATAATATGTCTCGTCGCCGAGAGGTCCTACGGCTCCACG
CGTGTAGACTTGAGCCCTAGTAACGCCGCCGGCTCTAGGTAGGTAGATAA
TTATGCCGCTTCCTCTCTCTGTTTTTCTCGAACTCTACCCGCCCGAGTGT
CCACCCAGCTGTATCGACGGTCGCCTGGGGTGGAGGCCTTGCTAGGTCGA
ACGTCTCGCCGCGACGAGCGTGCCCCGCACGTCGTGGGCAACCACGGCGG
CTTTTGGGACGGAGGAGGGTCGTCGTACTCGGAGAAACAGCAGCATTTCG
AAGAGGAGTCGCAGGTTGTGACATATGAGTGAAAGAGAGCAAAAGAGAAA
GAAAGCGTTCTTTGAGGGTATGTGCGTGCAACCAAGCGAGCTTAGCGCGA
GAGATCGACCACCCTTCTCACACGCGATCGAGGATTTTCGACCTCGGCGA
TGGACAAGAAGAACAAACGAACTCGGAGCTACAGGCGCGCCTCCTCGCCC
CCGTCCCCTGGGAGTGCGTACCGAAATCATATCATATACCGTATTATTTA
TGAGCTTCCTCCTGTAGAGCTAGAGCTGGAGCTGCGGAGACGCCGGA
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Coding sequence (CDS) from alignment at H-elongata_contig7874:7522..8668-

>mRNA_H-elongata_contig7874.15542.1 ID=mRNA_H-elongata_contig7874.15542.1|Name=mRNA_H-elongata_contig7874.15542.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig7874:7522..8668- (Himanthalia elongata Himel1 dioecious)
CTCGTTCGGGGAATAAGGGGTGGAGAGGTGGATGCGGAGGAAGAACGAAC
GGGGAAATCGAGCGCCGATGGCGCGGGCAAGGGTGTGTATCTGCCCGACG
GCGGTGGCCGAAAACGCCCCGCGGACTTGAAGAAACCCTTTGTCCCTCGT
GGGCGCAGAAGGGTTGACGATGGTGATGGGGGCGGTGGTAGGGCGCTTTC
CAGCTTGGTCAACAAGCGCGATTATTACGGCGATCCGGGGTCGGATTGGC
CGCCGACGGCGACGACGACGACGAAGGAATGCCGGAAATATCTGTCGATG
GAGCGTGTTCCGAGGGGAGGAGAGGAAAACAACCCGCAGCGGAGCCATGA
AGAGCTGGCGCTCGTTCGGGGAATAAGGGGTGGAGAGGTGGATGCGGAGG
AAGAACGAACGGGGAAATCGAGCGCCGATGGCGCGGGCAAGGGTGTGTAT
CTGCCCGACGGCGGTGGCCGAAAACGCCCCGCGGACTTGAAGAAACCCTT
TGTCCCTCGTGGGCGCAGAAGGGTTGACGATGGTGATGGGGGCGGTGGTA
GGGCGCTTTCCAGCTTGGTCAACAAGCGCGATTATTACGGCGATCCGGGG
TCGGATTGGCCGCCGACGGCGACGACGACGACGAAGGAATGCCGGAAATA
TCTGTCGATGGAGCGTGTTCCGAGGGGAGGAGAGGAAAACAACCCGCAGC
GGAGCCATGAAGAGCTGGCGCTGTATCGACGGTCGCCTGGGGTGGAGGCC
TTGCTAGGTCGAACGTCTCGCCGCGACGAGCGTGCCCCGCACGTCGTGGG
CAACCACGGCGGCTTTTGGGACGGAGGAGGGTCGTCGTACTCGGAGAAAC
AGCAGCATTTCGAAGAGGAGTCGCAGGTTGTGACATATGAGTGACTGTAT
CGACGGTCGCCTGGGGTGGAGGCCTTGCTAGGTCGAACGTCTCGCCGCGA
CGAGCGTGCCCCGCACGTCGTGGGCAACCACGGCGGCTTTTGGGACGGAG
GAGGGTCGTCGTACTCGGAGAAACAGCAGCATTTCGAAGAGGAGTCGCAG
GTTGTGACATATGAGTGA
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