mRNA_H-elongata_contig78600.15534.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: D7FU24_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU24_ECTSI) HSP 1 Score: 105 bits (261), Expect = 4.560e-28 Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 1
Query: 1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGGSVSR 171
GKPLLARHRMVNAALKEELVEDIHALSM T+TPAQW AEGG K+EP+P CAGGS SR
Sbjct: 50 GKPLLARHRMVNAALKEELVEDIHALSMTTRTPAQWAAEGGDKVEPTPPCAGGSTSR 106
BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: D8LTH4_ECTSI (BolA protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTH4_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 8.750e-15 Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGGS 162
GKPLLARHRMVNA EE+ +HALS+ KTPAQW AEG K+ PSP C GGS
Sbjct: 113 GKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEG-HKVAPSPPCMGGS 165
BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: G4ZLH3_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZLH3_PHYSP) HSP 1 Score: 69.7 bits (169), Expect = 7.990e-14 Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGGSVS 168
GKPLL RHRMVNA L+EEL + +HALS+ +KTP QW A +++PSP C GG +
Sbjct: 59 GKPLLQRHRMVNAVLQEELNDGVHALSILSKTPKQWEANA--QVKPSPNCRGGMTT 112
BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: A0A1V9Z5Q5_9STRA (BolA-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5Q5_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.560e-13 Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1
Query: 1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGG 159
GKPL+ RHRMVNA L+EEL +HALS+ +KTPAQW E + PSP C GG
Sbjct: 71 GKPLIQRHRMVNAVLEEELNGGVHALSIQSKTPAQW--EANSTVRPSPTCQGG 121
BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: A0A484DWY1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DWY1_BRELC) HSP 1 Score: 68.9 bits (167), Expect = 2.350e-13 Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1
Query: 1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGG 159
GKPLL RHRMVN LK+EL E +HALS+ +KTPAQWNA +++ SP C GG
Sbjct: 76 GKPLLHRHRMVNDVLKQELEEGMHALSILSKTPAQWNANA--QVKSSPNCRGG 126
BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: A0A6G0X0A1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0A1_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 2.850e-13 Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGGSV 165
GKPL+ RHRMVN ALKEE +HALS+ +KTPAQW E + PSP C GG +
Sbjct: 69 GKPLIQRHRMVNEALKEEFDMGVHALSIQSKTPAQW--EANNTVRPSPNCLGGML 121
BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: A0A8K1FC65_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FC65_PYTOL) HSP 1 Score: 67.8 bits (164), Expect = 3.950e-13 Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1
Query: 1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGG 159
GKPLL RHRMVNA L+EEL + +HALS+ KTPAQW E ++ SP C GG
Sbjct: 55 GKPLLQRHRMVNAVLEEELAQGVHALSIQGKTPAQW--EQNNTVQASPSCLGG 105
BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: UPI0014024C0E (bolA-like protein 1 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014024C0E) HSP 1 Score: 68.2 bits (165), Expect = 5.440e-13 Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGGS 162
G LLARHR+VN AL++ELV +HALS+ +TP QW + GG+ ++PSP C GGS
Sbjct: 90 GVSLLARHRLVNEALRDELVGCVHALSIQARTPEQWGSSGGR-VDPSPPCLGGS 142
BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: A0A662WN87_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WN87_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 5.720e-13 Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGG 159
GKPL+ RHR+VNA L++EL E +HALS+ +KTPAQW + +++PSP C GG
Sbjct: 58 GKPLIQRHRLVNAVLQQELDEGVHALSIQSKTPAQWASNS--EVKPSPNCQGG 108
BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Match: A0A3M6VVI5_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VVI5_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 5.860e-13 Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 1 GKPLLARHRMVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGGSVS 168
GKPL+ RHRMVNA L++EL + +HALS+ +KTP QW A ++PSP C GG +
Sbjct: 55 GKPLIQRHRMVNAVLQQELDDGVHALSILSKTPKQWEANA--MVKPSPSCRGGMAA 108 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78600.15534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig78600.15534.1 >prot_H-elongata_contig78600.15534.1 ID=prot_H-elongata_contig78600.15534.1|Name=mRNA_H-elongata_contig78600.15534.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp MVNAALKEELVEDIHALSMATKTPAQWNAEGGKKIEPSPLCAGGSVSR*back to top mRNA from alignment at H-elongata_contig78600:2218..2391+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig78600.15534.1 ID=mRNA_H-elongata_contig78600.15534.1|Name=mRNA_H-elongata_contig78600.15534.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig78600:2218..2391+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig78600:2218..2391+ >mRNA_H-elongata_contig78600.15534.1 ID=mRNA_H-elongata_contig78600.15534.1|Name=mRNA_H-elongata_contig78600.15534.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig78600:2218..2391+ (Himanthalia elongata Himel1 dioecious)back to top |