mRNA_H-elongata_contig78594.15530.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78594.15530.1
Unique NamemRNA_H-elongata_contig78594.15530.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78594.15530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78594contigH-elongata_contig78594:1334..2252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size919
Cds size498
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.0502186-UTR-H-elongata_contig78594:1333..17541622931191.0502186-UTR-H-elongata_contig78594:1333..1754Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78594 1334..1754 +
1691679735.1633098-UTR-H-elongata_contig78594:1333..17541691679735.1633098-UTR-H-elongata_contig78594:1333..1754Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78594 1334..1754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.0711339-CDS-H-elongata_contig78594:1754..22521622931191.0711339-CDS-H-elongata_contig78594:1754..2252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78594 1755..2252 +
1691679735.1763613-CDS-H-elongata_contig78594:1754..22521691679735.1763613-CDS-H-elongata_contig78594:1754..2252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78594 1755..2252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78594.15530.1prot_H-elongata_contig78594.15530.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78594 1755..2252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78594.15530.1

>prot_H-elongata_contig78594.15530.1 ID=prot_H-elongata_contig78594.15530.1|Name=mRNA_H-elongata_contig78594.15530.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
MMLIRRRLRCSRLLHSVVHLRVAPAARGHGRERPQDAGYAARVCRVLGRR
RVVPHKRHRHPKCGRGVAGERAETHAPGRTSVLVAVSAATATWCRRRFRS
QVPPGRRAYAGTNLTVLRLTSLSGGLRIAGRARHKSSGSARNVALDEVVE
SVSVSATLLLRLQQR*
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mRNA from alignment at H-elongata_contig78594:1334..2252+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78594.15530.1 ID=mRNA_H-elongata_contig78594.15530.1|Name=mRNA_H-elongata_contig78594.15530.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=919bp|location=Sequence derived from alignment at H-elongata_contig78594:1334..2252+ (Himanthalia elongata Himel1 dioecious)
CTGCCTCTGCCGCTGCCATTGCCGCCGCAACCGCTGCCTTCGCCAGCTCC
GCCTCCGCAACGGCGCGTCGTCTCTCCGACGGCATCGGGCGCGCCCTCGT
TGCCTCGCCTCCCTTTCTCCCCCCCTTCTGTGGCCTCTGCTCTTCCTCGC
GCTTCTTGAAGCTCTCCGACGCCGCCGCGGTCGCCACTGGGTGCGCTGCT
CGCGGAGCCTTGGGCTGCCCCTGCTGAGAAGAAAAAATATTCGACACTGG
CCTTATCGAAGCCGAGGCGCCCCTCGCCGCCCCTGCTTGCTGCAAAGGGT
GTGGGTTCGAGTTTTTCCCAATCCAAAGTCTTGACATCACGTCAACCTGT
GCGTACAGCATGTCTTCCGTTGAACCCAGTTTTTCGGGCTGCGCGGTAGC
CGAAGTTGAGTGCAGCGCGATATGATGCTGATTCGTCGCAGGCTGCGTTG
TAGCCGCCTGTTGCACAGCGTTGTTCATCTCCGGGTTGCTCCGGCCGCCC
GAGGACACGGTCGAGAACGTCCGCAGGACGCGGGTTATGCTGCCCGAGTG
TGCCGTGTCCTTGGACGTCGTCGAGTCGTTCCGCACAAGCGTCATCGCCA
TCCGAAGTGCGGCCGCGGTGTTGCTGGCGAGCGCGCCGAGACCCATGCCC
CCGGACGAACTAGCGTTCTCGTTGCCGTTTCCGCTGCCACTGCCACTTGG
TGCAGGCGGCGCTTCCGAAGCCAAGTGCCCCCCGGACGACGTGCGTACGC
GGGAACGAATCTGACTGTCCTCCGTCTGACTTCGCTCTCGGGCGGGCTGC
GCATCGCGGGGAGGGCTCGTCACAAGAGCAGTGGATCCGCGAGGAACGTG
GCCCTCGATGAGGTGGTGGAGAGTGTCTCGGTTTCGGCTACGCTGTTGCT
GAGGCTGCAACAAAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig78594:1334..2252+

>mRNA_H-elongata_contig78594.15530.1 ID=mRNA_H-elongata_contig78594.15530.1|Name=mRNA_H-elongata_contig78594.15530.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig78594:1334..2252+ (Himanthalia elongata Himel1 dioecious)
ATGATGCTGATTCGTCGCAGGCTGCGTTGTAGCCGCCTGTTGCACAGCGT
TGTTCATCTCCGGGTTGCTCCGGCCGCCCGAGGACACGGTCGAGAACGTC
CGCAGGACGCGGGTTATGCTGCCCGAGTGTGCCGTGTCCTTGGACGTCGT
CGAGTCGTTCCGCACAAGCGTCATCGCCATCCGAAGTGCGGCCGCGGTGT
TGCTGGCGAGCGCGCCGAGACCCATGCCCCCGGACGAACTAGCGTTCTCG
TTGCCGTTTCCGCTGCCACTGCCACTTGGTGCAGGCGGCGCTTCCGAAGC
CAAGTGCCCCCCGGACGACGTGCGTACGCGGGAACGAATCTGACTGTCCT
CCGTCTGACTTCGCTCTCGGGCGGGCTGCGCATCGCGGGGAGGGCTCGTC
ACAAGAGCAGTGGATCCGCGAGGAACGTGGCCCTCGATGAGGTGGTGGAG
AGTGTCTCGGTTTCGGCTACGCTGTTGCTGAGGCTGCAACAAAGGTAGAT
GATGCTGATTCGTCGCAGGCTGCGTTGTAGCCGCCTGTTGCACAGCGTTG
TTCATCTCCGGGTTGCTCCGGCCGCCCGAGGACACGGTCGAGAACGTCCG
CAGGACGCGGGTTATGCTGCCCGAGTGTGCCGTGTCCTTGGACGTCGTCG
AGTCGTTCCGCACAAGCGTCATCGCCATCCGAAGTGCGGCCGCGGTGTTG
CTGGCGAGCGCGCCGAGACCCATGCCCCCGGACGAACTAGCGTTCTCGTT
GCCGTTTCCGCTGCCACTGCCACTTGGTGCAGGCGGCGCTTCCGAAGCCA
AGTGCCCCCCGGACGACGTGCGTACGCGGGAACGAATCTGACTGTCCTCC
GTCTGACTTCGCTCTCGGGCGGGCTGCGCATCGCGGGGAGGGCTCGTCAC
AAGAGCAGTGGATCCGCGAGGAACGTGGCCCTCGATGAGGTGGTGGAGAG
TGTCTCGGTTTCGGCTACGCTGTTGCTGAGGCTGCAACAAAGGTAG
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