mRNA_H-elongata_contig78384.15507.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78384.15507.1
Unique NamemRNA_H-elongata_contig78384.15507.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78384.15507.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.060e-13
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = -3 
Query:   57 VIDLGEKEACTGLIFVCLSRAKKLTHFLAI-MPFDRLSRLGDEPVLKTRLQEEDRLKMLADTVILLHT 257
            VIDLG KEACTGL FVCLSRAK+L   +   M FDR+  LG+ P +K RLQEE RL  LA +  + +T
Sbjct:   40 VIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYT 107
[Close]
BLAST of mRNA_H-elongata_contig78384.15507.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.650e-12
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = -3 
Query:   57 VIDLGEKEACTGLIFVCLSRAKKLTHFLAI-MPFDRLSRLGDEPVLKTRLQEEDRLKMLADTVILLHT 257
            VIDLG KEACTGL FVCLSRAK+L   +   M FDR+  LG+ P +K RLQEE RL  LA +  + +T
Sbjct:   38 VIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYT 105
[Close]
BLAST of mRNA_H-elongata_contig78384.15507.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.690e-12
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = -3 
Query:   57 VIDLGEKEACTGLIFVCLSRAKKLTHFLAI-MPFDRLSRLGDEPVLKTRLQEEDRLKMLADTVILLHT 257
            VIDLG KEACTGL FVCLSRAK+L   +   M FDR+  LG+ P +K RLQEE RL  LA +  + +T
Sbjct:  104 VIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYT 171
[Close]
BLAST of mRNA_H-elongata_contig78384.15507.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 8.290e-12
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = -3 
Query:   57 VIDLGEKEACTGLIFVCLSRAKKLTHFLAI-MPFDRLSRLGDEPVLKTRLQEEDRLKMLADTVILLHT 257
            VIDLG KEACTGL FVCLSRAK+L   +   M FDR+  LG+ P +K RLQEE RL  LA +  + +T
Sbjct:  211 VIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYT 278
[Close]
BLAST of mRNA_H-elongata_contig78384.15507.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 9.110e-12
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = -3 
Query:   57 VIDLGEKEACTGLIFVCLSRAKKLTHFLAI-MPFDRLSRLGDEPVLKTRLQEEDRLKMLADTVILLHT 257
            VIDLG KEACTGL FVCLSRAK+L   +   M FDR+  LG+ P +K RLQEE RL  LA +  + +T
Sbjct:   38 VIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYT 105
[Close]
BLAST of mRNA_H-elongata_contig78384.15507.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.840e-11
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = -3 
Query:   57 VIDLGEKEACTGLIFVCLSRAKKLTHFLAI-MPFDRLSRLGDEPVLKTRLQEEDRLKMLADTVILLHT 257
            VIDLG KEACTGL FVCLSRAK+L   +   M FDR+  LG+ P +K RLQEE RL  LA +  + +T
Sbjct:  385 VIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYT 452
[Close]
BLAST of mRNA_H-elongata_contig78384.15507.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.880e-11
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = -3 
Query:   57 VIDLGEKEACTGLIFVCLSRAKKLTHFLAI-MPFDRLSRLGDEPVLKTRLQEEDRLKMLADTVILLHT 257
            VIDLG KEACTGL FVCLSRAK+L   +   M FDR+  LG+ P +K RLQEE RL  LA +  + +T
Sbjct:  102 VIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYT 169
[Close]
BLAST of mRNA_H-elongata_contig78384.15507.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.050e-11
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = -3 
Query:   57 VIDLGEKEACTGLIFVCLSRAKKLTHFLAI-MPFDRLSRLGDEPVLKTRLQEEDRLKMLADTVILLHT 257
            VIDLG KEACTGL FVCLSRAK+L   +   M FDR+  LG+ P +K RLQEE RL  LA +  + +T
Sbjct:  381 VIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYT 448
[Close]
BLAST of mRNA_H-elongata_contig78384.15507.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.480e-11
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = -3 
Query:   81 VIDLGEKEACTGLIFVCLSRAKKLTHFLAI-MPFDRLSRLGDEPVLKTRLQEEDRLKMLA 257
            VIDLG KEACTGL FVCLSRAK+L   +   M FDR+  LG+ P +K RLQEE     +A
Sbjct:   38 VIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEGAESFMA 97
[Close]
BLAST of mRNA_H-elongata_contig78384.15507.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.760e-11
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = -3 
Query:   57 VIDLGEKEACTGLIFVCLSRAKKLTHFLAI-MPFDRLSRLGDEPVLKTRLQEEDRLKMLADTVILLHT 257
            VIDLG KEACTGL FVCLSRAK+L   +   M FDR+  LG+   +K RLQEE RL  LA T  + +T
Sbjct:   35 VIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRLGELARTTRVRYT 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78384.15507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KSF1_9PHAE4.060e-1357.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE1.650e-1257.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE1.690e-1257.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUS2_9PHAE8.290e-1257.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE9.110e-1257.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JFG8_9PHAE1.840e-1157.35Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE1.880e-1157.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8Y8_9PHAE2.050e-1157.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFN2_9PHAE3.480e-1158.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K214_9PHAE3.760e-1157.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78384contigH-elongata_contig78384:323..992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size670
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78384.15507.1prot_H-elongata_contig78384.15507.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78384 335..754 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931188.7011423-UTR-H-elongata_contig78384:322..3341622931188.7011423-UTR-H-elongata_contig78384:322..334Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78384 323..334 +
1691679734.1863525-UTR-H-elongata_contig78384:322..3341691679734.1863525-UTR-H-elongata_contig78384:322..334Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78384 323..334 +
1622931188.7345185-UTR-H-elongata_contig78384:754..9921622931188.7345185-UTR-H-elongata_contig78384:754..992Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78384 755..992 +
1691679734.2114732-UTR-H-elongata_contig78384:754..9921691679734.2114732-UTR-H-elongata_contig78384:754..992Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78384 755..992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931188.7213624-CDS-H-elongata_contig78384:334..7541622931188.7213624-CDS-H-elongata_contig78384:334..754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78384 335..754 +
1691679734.1977186-CDS-H-elongata_contig78384:334..7541691679734.1977186-CDS-H-elongata_contig78384:334..754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78384 335..754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78384.15507.1

>prot_H-elongata_contig78384.15507.1 ID=prot_H-elongata_contig78384.15507.1|Name=mRNA_H-elongata_contig78384.15507.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
MFNPKVQTIQFRYYVVCSRMTVSASIFSRSSSCRRVLRTGSSPNLERRSN
GIIARKWVNFLARLKQTKINPVHASFSPKSITRPLTTSGLDSWSRACRSA
RLYASASAVACCLRAAAVSLRARSNWCCFRGTLCTLVRA*
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mRNA from alignment at H-elongata_contig78384:323..992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78384.15507.1 ID=mRNA_H-elongata_contig78384.15507.1|Name=mRNA_H-elongata_contig78384.15507.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=670bp|location=Sequence derived from alignment at H-elongata_contig78384:323..992+ (Himanthalia elongata Himel1 dioecious)
CCGGAATTTAACATGTTCAACCCGAAAGTCCAGACAATACAGTTCAGGTA
CTACGTCGTGTGCAGTAGGATGACTGTGTCTGCTAGCATTTTCAGTCGGT
CTTCTTCCTGCAGGCGTGTCTTGAGAACAGGCTCATCGCCTAACCTTGAG
AGACGATCGAACGGCATTATTGCCAGGAAATGGGTCAACTTCTTAGCACG
ACTCAAACAGACGAAAATCAATCCAGTGCACGCTTCCTTTTCCCCTAAAT
CGATCACGCGGCCTTTGACAACGTCTGGCCTTGACTCTTGGTCGAGAGCC
TGCAGGTCTGCGCGCTTATATGCTTCTGCTTCGGCTGTGGCTTGCTGTCT
GCGGGCAGCGGCCGTGAGTCTGCGTGCACGTTCCAACTGGTGTTGTTTCA
GGGGGACTCTCTGTACATTGGTACGAGCTTGAATCCTACCTTCCGCCTGT
CGTTGTTGTTGACGGCGGACTCTCTGTGCATCGGTGCGAGCTCAACGTCT
TGCAGCATCGCGGGCCCTTAGCGTAGTGCTGTCAGCGTCGCGTTCAATCT
GGCGTCGTGCTTGCGTCTTACGCCTCGCCTCAGCCTGCCTGGCGGATTGT
CTCGTGGCCGCTGGATGTCGATCTCCTCGAGTATCGCATGGGGTCTAAGC
TACCAAGAGATCGTCTCCTT
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Coding sequence (CDS) from alignment at H-elongata_contig78384:323..992+

>mRNA_H-elongata_contig78384.15507.1 ID=mRNA_H-elongata_contig78384.15507.1|Name=mRNA_H-elongata_contig78384.15507.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig78384:323..992+ (Himanthalia elongata Himel1 dioecious)
ATGTTCAACCCGAAAGTCCAGACAATACAGTTCAGGTACTACGTCGTGTG
CAGTAGGATGACTGTGTCTGCTAGCATTTTCAGTCGGTCTTCTTCCTGCA
GGCGTGTCTTGAGAACAGGCTCATCGCCTAACCTTGAGAGACGATCGAAC
GGCATTATTGCCAGGAAATGGGTCAACTTCTTAGCACGACTCAAACAGAC
GAAAATCAATCCAGTGCACGCTTCCTTTTCCCCTAAATCGATCACGCGGC
CTTTGACAACGTCTGGCCTTGACTCTTGGTCGAGAGCCTGCAGGTCTGCG
CGCTTATATGCTTCTGCTTCGGCTGTGGCTTGCTGTCTGCGGGCAGCGGC
CGTGAGTCTGCGTGCACGTTCCAACTGGTGTTGTTTCAGGGGGACTCTCT
GTACATTGGTACGAGCTTGAATGTTCAACCCGAAAGTCCAGACAATACAG
TTCAGGTACTACGTCGTGTGCAGTAGGATGACTGTGTCTGCTAGCATTTT
CAGTCGGTCTTCTTCCTGCAGGCGTGTCTTGAGAACAGGCTCATCGCCTA
ACCTTGAGAGACGATCGAACGGCATTATTGCCAGGAAATGGGTCAACTTC
TTAGCACGACTCAAACAGACGAAAATCAATCCAGTGCACGCTTCCTTTTC
CCCTAAATCGATCACGCGGCCTTTGACAACGTCTGGCCTTGACTCTTGGT
CGAGAGCCTGCAGGTCTGCGCGCTTATATGCTTCTGCTTCGGCTGTGGCT
TGCTGTCTGCGGGCAGCGGCCGTGAGTCTGCGTGCACGTTCCAACTGGTG
TTGTTTCAGGGGGACTCTCTGTACATTGGTACGAGCTTGA
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