mRNA_H-elongata_contig78317.15500.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78317.15500.1
Unique NamemRNA_H-elongata_contig78317.15500.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig78317.15500.1 vs. uniprot
Match: D8LNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW9_ECTSI)

HSP 1 Score: 292 bits (748), Expect = 8.790e-92
Identity = 173/253 (68.38%), Postives = 196/253 (77.47%), Query Frame = 1 
Query:    1 QAIQSGLAVLMQLQDALWRDLPVLKDPVLQSLDRINVDRSLLDQEVRADMRIGAARLLADRS-NGDXXXXXXXXXXXXXXXTADSSGRSDAL-----GSNGPSSSSLPPDFLKTIESPLDSQLIARYTMLERKDKLMIGSRWVLVLGVLTHDSYLLLFDVPKGHSSHKKNLNARTSEVFAELVPKPGVDAMATEISKHKDGGKSLDVNGLPIPPSVAIDLSACQVHFKPDGKSDATFEITEIRPAKGVTGVFK 741
            +AIQ GL  ++QLQDALWRDLP LK+PV+ +LDRINVDR LLDQEVR  MR+GAARLLA R  NG  XXXXXXXXXXXXXX A              G +   S ++P DFL  +ESPL S LIAR TMLER++K MI SRW+LVL +LTHDSYLLLFDVP+G ++HKK LNARTSE FAELVPKP V AMA E+ KHKDG K +D  GLP+PPSVAIDLSACQV FKPDGKSDATFEITEI+P +GV  VFK
Sbjct:  356 KAIQGGLTAMVQLQDALWRDLPALKEPVVHTLDRINVDRHLLDQEVRQQMRVGAARLLAGRQENGAGXXXXXXXXXXXXXXPAGXXXXXXXXXXXXGGGSVERSETMPADFLAGLESPLASSLIARSTMLERREKAMIASRWILVLAILTHDSYLLLFDVPRGTAAHKKQLNARTSEAFAELVPKPEVGAMAVELGKHKDG-KGVDSGGLPVPPSVAIDLSACQVSFKPDGKSDATFEITEIKPTRGVKTVFK 607
[Close]
BLAST of mRNA_H-elongata_contig78317.15500.1 vs. uniprot
Match: A0A6H5KEN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN9_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.370e-20
Identity = 79/126 (62.70%), Postives = 87/126 (69.05%), Query Frame = 1 
Query:    1 QAIQSGLAVLMQLQDALWRDLPVLKDPVLQSLDRINVDRSLLDQEVRADMRIGAARLLADR-----SNGDXXXXXXXXXXXXXXXTADSSGRSDALGSNGPS---SSSLPPDFLKTIESPLDSQLI 354
            +AIQ GL  ++QLQDALWRDLP LKDPVL +LDRINVDR LLDQEVR  MR+GAARLLA R     S G XXXXXXXXXXXXXXX              G S   S ++PPDFL  +ESPL S LI
Sbjct:  398 KAIQGGLTAMVQLQDALWRDLPALKDPVLHTLDRINVDRHLLDQEVRQQMRVGAARLLAGRQENGASAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGSVERSETIPPDFLAGLESPLASSLI 523
[Close]
BLAST of mRNA_H-elongata_contig78317.15500.1 vs. uniprot
Match: A0A836CKX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKX7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.070e-8
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    4 AIQSGLAVLMQLQDALWRDLPVLKDPVLQSLDRINVDRSLLDQEVRADMR-IGAARLLADRSNGD 195
            AI++ L  L+Q QD +WR LP+LKDPVLQ L+RIN DR  LD EVR  MR + AA+L      G+
Sbjct:  297 AIRNALLSLLQAQDLVWRQLPILKDPVLQVLERINTDRRFLDGEVRDAMRTLSAAKLRTASKAGE 361
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78317.15500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNW9_ECTSI8.790e-9268.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEN9_9PHAE1.370e-2062.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CKX7_9STRA2.070e-853.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78317contigH-elongata_contig78317:336..2407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.9
Seed ortholog evalue7.1e-74
Seed eggNOG ortholog2880.D8LNW9
EggNOG OGs28I9V@1,2QQK9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_005520.1
Exons5
Model size750
Cds size720
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78317.15500.1prot_H-elongata_contig78317.15500.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78317 366..2407 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.9390626-UTR-H-elongata_contig78317:335..3651622931187.9390626-UTR-H-elongata_contig78317:335..365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78317 336..365 +
1691679733.8981602-UTR-H-elongata_contig78317:335..3651691679733.8981602-UTR-H-elongata_contig78317:335..365Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78317 336..365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.959436-CDS-H-elongata_contig78317:365..5221622931187.959436-CDS-H-elongata_contig78317:365..522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78317 366..522 +
1691679733.9091094-CDS-H-elongata_contig78317:365..5221691679733.9091094-CDS-H-elongata_contig78317:365..522Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78317 366..522 +
1622931187.9729092-CDS-H-elongata_contig78317:859..10261622931187.9729092-CDS-H-elongata_contig78317:859..1026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78317 860..1026 +
1691679733.9214933-CDS-H-elongata_contig78317:859..10261691679733.9214933-CDS-H-elongata_contig78317:859..1026Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78317 860..1026 +
1622931187.9876823-CDS-H-elongata_contig78317:1326..14851622931187.9876823-CDS-H-elongata_contig78317:1326..1485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78317 1327..1485 +
1691679733.931652-CDS-H-elongata_contig78317:1326..14851691679733.931652-CDS-H-elongata_contig78317:1326..1485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78317 1327..1485 +
1622931188.002419-CDS-H-elongata_contig78317:1782..19231622931188.002419-CDS-H-elongata_contig78317:1782..1923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78317 1783..1923 +
1691679733.9392266-CDS-H-elongata_contig78317:1782..19231691679733.9392266-CDS-H-elongata_contig78317:1782..1923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78317 1783..1923 +
1622931188.0193734-CDS-H-elongata_contig78317:2311..24071622931188.0193734-CDS-H-elongata_contig78317:2311..2407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78317 2312..2407 +
1691679733.9468327-CDS-H-elongata_contig78317:2311..24071691679733.9468327-CDS-H-elongata_contig78317:2311..2407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78317 2312..2407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78317.15500.1

>prot_H-elongata_contig78317.15500.1 ID=prot_H-elongata_contig78317.15500.1|Name=mRNA_H-elongata_contig78317.15500.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=240bp
MQLQDALWRDLPVLKDPVLQSLDRINVDRSLLDQEVRADMRIGAARLLAD
RSNGDGGDGGGGSGERASSSTADSSGRSDALGSNGPSSSSLPPDFLKTIE
SPLDSQLIARYTMLERKDKLMIGSRWVLVLGVLTHDSYLLLFDVPKGHSS
HKKNLNARTSEVFAELVPKPGVDAMATEISKHKDGGKSLDVNGLPIPPSV
AIDLSACQVHFKPDGKSDATFEITEIRPAKGVTGVFKVT*
back to top

mRNA from alignment at H-elongata_contig78317:336..2407+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78317.15500.1 ID=mRNA_H-elongata_contig78317.15500.1|Name=mRNA_H-elongata_contig78317.15500.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2072bp|location=Sequence derived from alignment at H-elongata_contig78317:336..2407+ (Himanthalia elongata Himel1 dioecious)
CAGGCCATCCAGAGCGGGCTGGCCGTCCTGATGCAGCTCCAAGACGCGCT
CTGGCGAGACCTTCCGGTGCTAAAGGATCCGGTCTTGCAGAGCCTCGACA
GGATCAACGTGGACAGGAGCCTCCTGGATCAGGAAGTGCGGGCGGACATG
CGAATTGGCGCTGCGAGACTTTTGGCCGACAGGTCGAGTCGCACCTCTTA
ATTTCGTACAGTACCTGGTATTATATATATATATATATGATATATTTCAC
GCACCATTTTTTCTATCTTTGATTTTGTTTTTGCCTTAGTGTTTGCTATA
TGTATTAATTTTCAAATGTATATACACAAGACATTTATTTTATGGCCTGT
GATTGACTAACCTCTTCTCTCCGCGGTGTAACGGTCGCAAGCGTGAAAAG
CAAGCAGCTGCGCTACAGAAAAAAGTACCCGAGCGTTCGAGTGACGACCT
TCCCGCGGCGTGTCCAGGTCCGTGTCCTGACCGCGTTGGTGTCGCCTGTG
TCTTCTTGGTGGTGTGCTACAGAGATGGAGATGGCGGTGACGGTGGAGGG
GGAAGCGGGGAAAGGGCATCGTCAAGTACGGCTGACAGCTCGGGCCGGTC
CGACGCGCTCGGAAGCAACGGCCCCTCGTCCTCCTCCCTACCGCCGGACT
TCTTGAAGACTATAGAATCGCCGCTGGACAGCCAGCTCATCGTAAGTCCT
GTTCGTGCTCACGACGGCTGTGTCTACTCCAAAGAGACGATGTCCGTGGA
AAATCAGGGGAGGGGGCGAGGGAGAGTGTCTGCTGCTGCTGCTGTTAATA
CTGCTGCTGTGTTGTGTGTCGTGTTTTGAGAGTCTTGCGCATATCATGAT
ATATATCTAGTCTTGCGAGACACAATTTTTTCAAAATGAGTTGAGATTTG
TTGATGATTCTCGTATGCATTCAGAGCTTGCTGGTCTTGCTGGTGACGGC
TCTATCCCTCTATCCCACCCCTCTATCCCTCTATCTTAAAGGCGCGATAC
ACCATGTTGGAGAGGAAAGACAAGCTGATGATCGGCTCTCGCTGGGTGCT
AGTGCTGGGAGTTCTGACGCATGACTCGTACCTGCTGCTGTTCGATGTGC
CCAAGGGCCACTCCTCACACAAGAAAAATCTCAACGCGCGAACTTCAGAG
GTCAGAGTAATGTCGTTAGAAGGACGTGGGCTGACAAGGCGCCGCCTGAT
ATATGGATGCGGCCGGCTAGGTACGGATACCGCAGGCAACGGCCAGAGAT
CCCGGGTGTGTTACTGGTGCTACCGTGGTGCTAGTGCTGGACAGAGTCTG
CTTGCACGATGCATTTTGTTTTGATACGATGGTGCGATGATGCGATGAAA
GTGTACTGTTATCCGGTATGCTACGAGGAGTTGGGAGTGATCGATATCTG
GTGTTTGTCACGAGAATACTCCCACCGGCCCCTATTTTGTCGAGCAGGTG
TTTGCTGAGCTGGTGCCCAAGCCAGGGGTCGACGCGATGGCGACAGAGAT
CAGCAAGCACAAGGACGGTGGAAAGAGTCTCGACGTGAACGGGCTGCCCA
TCCCTCCGTCCGTTGCCATTGATCTCAGTGCATGCCAGGTGGCGGAGAAT
GCCGGGGACACTGAGTCGCCCACCGAAAAGTTTTACCCTCCTGAGCTGCA
TTGGTGTTGTGGAATATAACCGACCCTTCTACCCCTTCTATAACCGTATA
CATTATTATCATCATTATCATTATAAAATTATTATTATTATTATTATTAT
TTTTATTTTTATTTTTATTTAAAAGACTTCATTCTATTATTATTATTATT
ATTATTATTTATATTATTATTAATGAAACGTGTAGGATGCGCAGCAGCAG
CAGCACAGGGCATGTGTGTGGTATGTTTGTGTGTATGCTGTTGATCGCGT
CCCCCGACAATTTCCCTTCAACATCCTGGTGTACTTCTCGGCGTTGTTGC
TTTCCTTTCCTTTCCTTTTCTTGAAGGTCCATTTTAAACCCGACGGCAAG
AGCGACGCAACCTTCGAAATCACCGAGATCAGGCCAGCCAAGGGGGTTAC
CGGTGTCTTCAAGGTAACATAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig78317:336..2407+

>mRNA_H-elongata_contig78317.15500.1 ID=mRNA_H-elongata_contig78317.15500.1|Name=mRNA_H-elongata_contig78317.15500.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1440bp|location=Sequence derived from alignment at H-elongata_contig78317:336..2407+ (Himanthalia elongata Himel1 dioecious)
ATGCAGCTCCAAGACGCGCTCTGGCGAGACCTTCCGGTGCTAAAGGATCC
GGTCTTGCAGAGCCTCGACAGGATCAACGTGGACAGGAGCCTCCTGGATC
AGGAAGTGCGGGCGGACATGCGAATTGGCGCTGCGAGACTTTTGGCCGAC
AGGTCGAATGCAGCTCCAAGACGCGCTCTGGCGAGACCTTCCGGTGCTAA
AGGATCCGGTCTTGCAGAGCCTCGACAGGATCAACGTGGACAGGAGCCTC
CTGGATCAGGAAGTGCGGGCGGACATGCGAATTGGCGCTGCGAGACTTTT
GGCCGACAGGTCGAATGGAGATGGCGGTGACGGTGGAGGGGGAAGCGGGG
AAAGGGCATCGTCAAGTACGGCTGACAGCTCGGGCCGGTCCGACGCGCTC
GGAAGCAACGGCCCCTCGTCCTCCTCCCTACCGCCGGACTTCTTGAAGAC
TATAGAATCGCCGCTGGACAGCCAGCTCATCATGGAGATGGCGGTGACGG
TGGAGGGGGAAGCGGGGAAAGGGCATCGTCAAGTACGGCTGACAGCTCGG
GCCGGTCCGACGCGCTCGGAAGCAACGGCCCCTCGTCCTCCTCCCTACCG
CCGGACTTCTTGAAGACTATAGAATCGCCGCTGGACAGCCAGCTCATCGC
GCGATACACCATGTTGGAGAGGAAAGACAAGCTGATGATCGGCTCTCGCT
GGGTGCTAGTGCTGGGAGTTCTGACGCATGACTCGTACCTGCTGCTGTTC
GATGTGCCCAAGGGCCACTCCTCACACAAGAAAAATCTCAACGCGCGAAC
TTCAGAGGCGCGATACACCATGTTGGAGAGGAAAGACAAGCTGATGATCG
GCTCTCGCTGGGTGCTAGTGCTGGGAGTTCTGACGCATGACTCGTACCTG
CTGCTGTTCGATGTGCCCAAGGGCCACTCCTCACACAAGAAAAATCTCAA
CGCGCGAACTTCAGAGGTGTTTGCTGAGCTGGTGCCCAAGCCAGGGGTCG
ACGCGATGGCGACAGAGATCAGCAAGCACAAGGACGGTGGAAAGAGTCTC
GACGTGAACGGGCTGCCCATCCCTCCGTCCGTTGCCATTGATCTCAGTGC
ATGCCAGGTGTTTGCTGAGCTGGTGCCCAAGCCAGGGGTCGACGCGATGG
CGACAGAGATCAGCAAGCACAAGGACGGTGGAAAGAGTCTCGACGTGAAC
GGGCTGCCCATCCCTCCGTCCGTTGCCATTGATCTCAGTGCATGCCAGGT
CCATTTTAAACCCGACGGCAAGAGCGACGCAACCTTCGAAATCACCGAGA
TCAGGCCAGCCAAGGGGGTTACCGGTGTCTTCAAGGTAACATAGGTCCAT
TTTAAACCCGACGGCAAGAGCGACGCAACCTTCGAAATCACCGAGATCAG
GCCAGCCAAGGGGGTTACCGGTGTCTTCAAGGTAACATAG
back to top