mRNA_H-elongata_contig7817.15490.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7817.15490.1
Unique NamemRNA_H-elongata_contig7817.15490.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7817.15490.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 5.560e-49
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMSRHKLNHRCSFPLELDMSPWTLE 258
            QDK+SLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTM RHKLNHRCSFP+ELDM+PWTLE
Sbjct: 2829 QDKESLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLE 2914          
BLAST of mRNA_H-elongata_contig7817.15490.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 1.920e-48
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMSRHKLNHRCSFPLELDMSPWTLE 258
            QDK+SLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDL TM RHKLNHRCSFP+ELDM+PWTLE
Sbjct: 1846 QDKESLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLGTMRRHKLNHRCSFPMELDMAPWTLE 1931          
BLAST of mRNA_H-elongata_contig7817.15490.1 vs. uniprot
Match: A0A835YQG3_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQG3_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.340e-31
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMSRHKLNHRCSFPL 228
            Q KD+L  +L L  +GE L GDN YLCE+CG+RV AQRRCAIK LP TLIVHLKRFEF+L TM+RHKLNHRC+FP+
Sbjct:  137 QTKDTLAAALDLFTSGETLDGDNKYLCEQCGRRVAAQRRCAIKDLPPTLIVHLKRFEFNLETMTRHKLNHRCAFPM 212          
BLAST of mRNA_H-elongata_contig7817.15490.1 vs. uniprot
Match: A0A7S4ITW2_9EUKA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4ITW2_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 2.480e-25
Identity = 49/84 (58.33%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    7 KDSLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMSRHKLNHRCSFPLELDMSPWTLE 258
            K SLE SL+L V G+ML GDN Y C KC ++VTA +RC I+ LP+TLIVH+KRFEFDL  M R K+N  C FP +L++ P+T E
Sbjct:  213 KSSLEESLELYVEGDMLEGDNKYQCSKCDKKVTALKRCCIESLPNTLIVHMKRFEFDLEEMRRMKVNDHCKFPFDLNVEPYTKE 296          
BLAST of mRNA_H-elongata_contig7817.15490.1 vs. uniprot
Match: A0A6B2KX30_9EUKA (USP domain-containing protein n=2 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KX30_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 7.750e-25
Identity = 46/86 (53.49%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMSRHKLNHRCSFPLELDMSPWTLE 258
            + K++LE +L+L V GEMLTG+N Y+CE CG+ V+  +RC IK LP  L++HLKRFEFD  T+ R K++  CSFP+ L+M P+T E
Sbjct:  135 KQKENLESALELFVQGEMLTGENKYMCESCGEPVSTLKRCCIKDLPHMLVIHLKRFEFDYDTLDRKKVSSPCSFPMLLNMEPYTAE 220          
BLAST of mRNA_H-elongata_contig7817.15490.1 vs. uniprot
Match: A0A6A7FV64_9CRUS (Ubiquitin domain containing protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FV64_9CRUS)

HSP 1 Score: 102 bits (254), Expect = 1.760e-23
Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMSRHKLNHRCSFPLELDMSPWTLE 258
            +DK S+E SLQ  V GEM+ GD+ Y+C  C  +V   RR +IK+LP+TL++ LKRFEFDL TM + K+N  C+FPL L+M P+T+E
Sbjct:  687 RDKSSIEESLQAYVTGEMMEGDDAYMCSACNAKVDTLRRSSIKELPNTLVLDLKRFEFDLDTMRKLKINDECTFPLVLNMQPYTVE 772          
BLAST of mRNA_H-elongata_contig7817.15490.1 vs. uniprot
Match: A0A4D9CWN0_9STRA (USP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWN0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.390e-23
Identity = 47/83 (56.63%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMSRHKLNHRCSFPLELDMSPW 249
            ++K+SLE SL L V+GE+L GDN Y C +CG++V A RR A++ +P  LI+HLKRFEFDL  M + K+N RCSFPL L M P+
Sbjct:  905 KNKESLEDSLALYVSGELLAGDNKYYCAECGRKVEAVRRTALQHIPPILIIHLKRFEFDLEHMIKFKVNDRCSFPLHLTMDPY 987          
BLAST of mRNA_H-elongata_contig7817.15490.1 vs. uniprot
Match: A0A0D2WMI0_CAPO3 (Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WMI0_CAPO3)

HSP 1 Score: 102 bits (253), Expect = 2.430e-23
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMSRHKLNHRCSFPLELDMSPWTL 255
            ++K S+  SL L V GEML GDN Y C  C + VTA++R  +  LP TLIVHLKRFEFD+ T+ R+K+N  C FP ELDM P+TL
Sbjct: 1968 KNKKSILESLALYVEGEMLDGDNKYFCATCSRHVTAKKRACVFSLPQTLIVHLKRFEFDMETLRRYKINDYCEFPHELDMEPYTL 2052          
BLAST of mRNA_H-elongata_contig7817.15490.1 vs. uniprot
Match: L8GPA8_ACACA (Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPA8_ACACA)

HSP 1 Score: 100 bits (249), Expect = 8.420e-23
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMSRHKLNHRCSFPLELDMSPWTLE 258
            ++K S+  SL L V G+ML GDN + C +C  +V A +RC +K LP  LIVHLKRFEFDL TM R KLN  C FP+ LDM P+T E
Sbjct: 1541 KNKKSILESLALYVEGDMLEGDNKFHCSECNAKVDALKRCCVKNLPDNLIVHLKRFEFDLETMKRIKLNDSCQFPMILDMEPYTKE 1626          
BLAST of mRNA_H-elongata_contig7817.15490.1 vs. uniprot
Match: A0A1Y2GGR1_9FUNG (Ubiquitinyl hydrolase 1 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GGR1_9FUNG)

HSP 1 Score: 97.8 bits (242), Expect = 7.450e-22
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMSRHKLNHRCSFPLELDMSPWTLE 258
            ++K SLE SLQL V GE+L GDN Y C  C + V A +R  IK+LP  LI+HLKRF++D+ TM R K+N    FP+ LDM P+TL+
Sbjct: 1793 KNKKSLEESLQLYVQGEILDGDNKYKCSSCDKHVDAIKRACIKELPQNLILHLKRFDYDMDTMRRIKINDHFEFPMRLDMEPYTLD 1878          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7817.15490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU88_ECTSI5.560e-4995.35Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A6H5KTV6_9PHAE1.920e-4894.19USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YQG3_9STRA1.340e-3171.05USP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4ITW2_9EUKA2.480e-2558.33Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A6B2KX30_9EUKA7.750e-2553.49USP domain-containing protein n=2 Tax=Arcella inte... [more]
A0A6A7FV64_9CRUS1.760e-2353.49Ubiquitin domain containing protein (Fragment) n=1... [more]
A0A4D9CWN0_9STRA2.390e-2356.63USP domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A0D2WMI0_CAPO32.430e-2356.47Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarz... [more]
L8GPA8_ACACA8.420e-2355.81Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba caste... [more]
A0A1Y2GGR1_9FUNG7.450e-2253.49Ubiquitinyl hydrolase 1 n=1 Tax=Lobosporangium tra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7817contigH-elongata_contig7817:2000..2810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.5
Seed ortholog evalue2.2e-41
Seed eggNOG ortholog2880.D8LU88
KEGG koko:K11840,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931187.057365-CDS-H-elongata_contig7817:1999..20591622931187.057365-CDS-H-elongata_contig7817:1999..2059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7817 2000..2059 +
1691679733.5638878-CDS-H-elongata_contig7817:1999..20591691679733.5638878-CDS-H-elongata_contig7817:1999..2059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7817 2000..2059 +
1622931187.077429-CDS-H-elongata_contig7817:2612..28101622931187.077429-CDS-H-elongata_contig7817:2612..2810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7817 2613..2810 +
1691679733.5741599-CDS-H-elongata_contig7817:2612..28101691679733.5741599-CDS-H-elongata_contig7817:2612..2810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7817 2613..2810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7817.15490.1prot_H-elongata_contig7817.15490.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7817 2000..2810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7817.15490.1

>prot_H-elongata_contig7817.15490.1 ID=prot_H-elongata_contig7817.15490.1|Name=mRNA_H-elongata_contig7817.15490.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
QDKDSLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLI
VHLKRFEFDLSTMSRHKLNHRCSFPLELDMSPWTLE
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mRNA from alignment at H-elongata_contig7817:2000..2810+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7817.15490.1 ID=mRNA_H-elongata_contig7817.15490.1|Name=mRNA_H-elongata_contig7817.15490.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=811bp|location=Sequence derived from alignment at H-elongata_contig7817:2000..2810+ (Himanthalia elongata Himel1 dioecious)
CAGGACAAAGACTCTCTGGAAGGCAGCCTGCAACTGCTCGTGGCCGGCGA AATGTTGACGGTGAGTAGACTGACCCTCCTTGGGAGTTCAAACGATTCGA ACCTCAAAGATCGTGGTTCTGTGCGGTTTTGCGCGCATTCGTTACCAGAA AAAGAGAAACAGTCGAGGGGGGGAGGGGGGGCGGGCGTGCACTAATCGGT CGTTATTTTGTTGGTGCATCTGTCCTGTTCAAAGGCGTGCCCCTGGATCA TAGGGCAGTGCGCGGGGAAGAGGAGAGCTCTCTGGTGCTTGTTACAGGCG GTGATCCTAGCTCGGGATGATATGCGGTGCGGTGCGATGCGAGGCGACGC CAGCCGCTTTTTCCGGTTTCCCACCGTCAATCAATTACCTGCGCGACCGA CCGACCTTTCCTATCGAACCGGCGGTGTTGCTTCCCTCCCCCCGTCCTAA AAACGGTGTTGGCGATGACGTACCATGATACGAAAGGAGTGCGCGCTTTG TGCACCACAGTCTCGCTGTCCCATACCGTATATGGGTGTATCCTGCGCGC TTTGCTACCTCTGCGGTACCATTTCGAGTTTTTTTTACTGAATTTCTGAC TGCGACGAGGCAGGGAGACAATTGCTACTTGTGCGAAAAGTGCGGTCAGC GCGTCACGGCGCAGCGGCGGTGCGCGATCAAGCAGCTCCCCTCGACGCTC ATCGTCCATCTCAAGCGCTTCGAGTTCGATCTGAGTACTATGAGCAGGCA CAAGCTCAACCACCGCTGCTCGTTTCCCCTGGAGCTAGACATGTCGCCCT GGACCTTGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig7817:2000..2810+

>mRNA_H-elongata_contig7817.15490.1 ID=mRNA_H-elongata_contig7817.15490.1|Name=mRNA_H-elongata_contig7817.15490.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig7817:2000..2810+ (Himanthalia elongata Himel1 dioecious)
CAGGACAAAGACTCTCTGGAAGGCAGCCTGCAACTGCTCGTGGCCGGCGA
AATGTTGACGCAGGACAAAGACTCTCTGGAAGGCAGCCTGCAACTGCTCG
TGGCCGGCGAAATGTTGACGGGAGACAATTGCTACTTGTGCGAAAAGTGC
GGTCAGCGCGTCACGGCGCAGCGGCGGTGCGCGATCAAGCAGCTCCCCTC
GACGCTCATCGTCCATCTCAAGCGCTTCGAGTTCGATCTGAGTACTATGA
GCAGGCACAAGCTCAACCACCGCTGCTCGTTTCCCCTGGAGCTAGACATG
TCGCCCTGGACCTTGGAGGGAGACAATTGCTACTTGTGCGAAAAGTGCGG
TCAGCGCGTCACGGCGCAGCGGCGGTGCGCGATCAAGCAGCTCCCCTCGA
CGCTCATCGTCCATCTCAAGCGCTTCGAGTTCGATCTGAGTACTATGAGC
AGGCACAAGCTCAACCACCGCTGCTCGTTTCCCCTGGAGCTAGACATGTC
GCCCTGGACCTTGGAG
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