mRNA_H-elongata_contig78067.15477.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78067.15477.1
Unique NamemRNA_H-elongata_contig78067.15477.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78067.15477.1 vs. uniprot
Match: A0A6H5L258_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L258_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 1.680e-73
Identity = 117/126 (92.86%), Postives = 124/126 (98.41%), Query Frame = 1 
Query:    1 VVTPYEGQRSYLVNHLQRTGPLRSSLYAEIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFGCIVVGNPRILSKNPLWNALVNFFKDHDCLVEGALDNMQPSLMSFPPPL 378
            VVTPYEGQRSYLV+HLQRTG LRSSLY+EIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFGCI++GNPRIL+KNPLWNALVNF+KDH+CLVEG LDNMQPSLMSFPPPL
Sbjct:  879 VVTPYEGQRSYLVDHLQRTGSLRSSLYSEIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFGCIIIGNPRILAKNPLWNALVNFYKDHECLVEGPLDNMQPSLMSFPPPL 1004
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BLAST of mRNA_H-elongata_contig78067.15477.1 vs. uniprot
Match: D7FN00_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN00_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 2.740e-73
Identity = 117/126 (92.86%), Postives = 124/126 (98.41%), Query Frame = 1 
Query:    1 VVTPYEGQRSYLVNHLQRTGPLRSSLYAEIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFGCIVVGNPRILSKNPLWNALVNFFKDHDCLVEGALDNMQPSLMSFPPPL 378
            VVTPYEGQRSYLV+HLQRTG LRSSLY+EIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFGCI++GNPRIL+KNPLWNALVNF+KDH+CLVEG LDNMQPSLMSFPPPL
Sbjct:  829 VVTPYEGQRSYLVDHLQRTGSLRSSLYSEIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFGCIIIGNPRILAKNPLWNALVNFYKDHECLVEGPLDNMQPSLMSFPPPL 954
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BLAST of mRNA_H-elongata_contig78067.15477.1 vs. uniprot
Match: A0A812VX29_SYMMI (UPF1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VX29_SYMMI)

HSP 1 Score: 193 bits (491), Expect = 1.750e-59
Identity = 88/125 (70.40%), Postives = 111/125 (88.80%), Query Frame = 1 
Query:    1 VVTPYEGQRSYLVNHLQRTGPLRSSLYAEIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFGCIVVGNPRILSKNPLWNALVNFFKDHDCLVEGALDNMQPSLMSFPPP 375
            VVTPYEGQRSY+V H++R+GPLR+ LY++IEVASVDSFQGREKD I+L+CVRSNE QGIGFL DPRRLNVALTRAR+G I++GN R+L+KN LWN+L+  F++ DCLV+G L+N+QPS++S P P
Sbjct:   13 VVTPYEGQRSYVVTHMERSGPLRTELYSDIEVASVDSFQGREKDFIILSCVRSNEQQGIGFLRDPRRLNVALTRARYGVIIIGNARLLAKNALWNSLLLHFQERDCLVQGPLNNLQPSMISLPKP 137
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BLAST of mRNA_H-elongata_contig78067.15477.1 vs. uniprot
Match: A0A397FDY7_9STRA (AAA_12 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FDY7_9STRA)

HSP 1 Score: 190 bits (483), Expect = 3.780e-58
Identity = 86/123 (69.92%), Postives = 108/123 (87.80%), Query Frame = 1 
Query:    1 VVTPYEGQRSYLVNHLQRTGPLRSSLYAEIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFGCIVVGNPRILSKNPLWNALVNFFKDHDCLVEGALDNMQPSLMSFP 369
            V+TPYEGQR+Y+VN +QR GP+RS LY ++EVASVDSFQGREKDLI+L+CVRSNEHQGIGFLSD RRLNVALTRA++G I++GNPR+L+K  LWN L+N ++D   +VEG+L+N+QPS M FP
Sbjct:   16 VITPYEGQRAYIVNFMQRNGPMRSQLYKDVEVASVDSFQGREKDLIILSCVRSNEHQGIGFLSDQRRLNVALTRAKYGVILLGNPRVLAKQELWNDLLNHYRDQSLVVEGSLNNLQPSFMHFP 138
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BLAST of mRNA_H-elongata_contig78067.15477.1 vs. uniprot
Match: A0A7C8YCK5_OPUST (RNA helicase (Fragment) n=3 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YCK5_OPUST)

HSP 1 Score: 193 bits (490), Expect = 6.190e-58
Identity = 86/127 (67.72%), Postives = 110/127 (86.61%), Query Frame = 1 
Query:    1 VVTPYEGQRSYLVNHLQRTGPLRSSLYAEIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFGCIVVGNPRILSKNPLWNALVNFFKDHDCLVEGALDNMQPSLMSFPPPLK 381
            V+TPYEGQR+Y+VN++ R G LR  LY EIEVASVDSFQGREKD I+L+CVRSNEHQGIGFL+DPRRLNVALTRAR+G +++GNP++LSK PLWN+L+  +K+H+CLVEG L+N++ S++ F  P K
Sbjct:  169 VITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKK 295
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BLAST of mRNA_H-elongata_contig78067.15477.1 vs. uniprot
Match: A0A540KQ12_MALBA (AAA_12 domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540KQ12_MALBA)

HSP 1 Score: 196 bits (498), Expect = 6.650e-58
Identity = 87/127 (68.50%), Postives = 111/127 (87.40%), Query Frame = 1 
Query:    1 VVTPYEGQRSYLVNHLQRTGPLRSSLYAEIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFGCIVVGNPRILSKNPLWNALVNFFKDHDCLVEGALDNMQPSLMSFPPPLK 381
            V+TPYEGQR+Y+VN++ R G LR  LY EIEVASVDSFQGREKD I+L+CVRSNEHQGIGFL+DPRRLNVALTRAR+G +++GNP++LSK PLWN+L+  +K+H+CLVEG L+N++ S++ FP P K
Sbjct:   41 VITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFPKPKK 167
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BLAST of mRNA_H-elongata_contig78067.15477.1 vs. uniprot
Match: A0A0A9CJP8_ARUDO (AAA_12 domain-containing protein n=6 Tax=Poaceae TaxID=4479 RepID=A0A0A9CJP8_ARUDO)

HSP 1 Score: 193 bits (490), Expect = 1.330e-57
Identity = 86/127 (67.72%), Postives = 110/127 (86.61%), Query Frame = 1 
Query:    1 VVTPYEGQRSYLVNHLQRTGPLRSSLYAEIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFGCIVVGNPRILSKNPLWNALVNFFKDHDCLVEGALDNMQPSLMSFPPPLK 381
            V+TPYEGQR+Y+VN++ R G LR  LY EIEVASVDSFQGREKD I+L+CVRSNEHQGIGFL+DPRRLNVALTRAR+G +++GNP++LSK PLWN+L+  +K+H+CLVEG L+N++ S++ F  P K
Sbjct:  122 VITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKK 248
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BLAST of mRNA_H-elongata_contig78067.15477.1 vs. uniprot
Match: A0A446KX30_TRITD (AAA_12 domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446KX30_TRITD)

HSP 1 Score: 193 bits (491), Expect = 1.810e-57
Identity = 87/127 (68.50%), Postives = 110/127 (86.61%), Query Frame = 1 
Query:    1 VVTPYEGQRSYLVNHLQRTGPLRSSLYAEIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFGCIVVGNPRILSKNPLWNALVNFFKDHDCLVEGALDNMQPSLMSFPPPLK 381
            V+TPYEGQR+Y+VN++ R G LR  LY EIEVASVDSFQGREKD I+L+CVRSNEHQGIGFL+DPRRLNVALTRAR+G +V+GNP++LSK PLWN+L+  +K+H+CLVEG L+N++ S++ F  P K
Sbjct:   89 VITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVVLGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKK 215
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BLAST of mRNA_H-elongata_contig78067.15477.1 vs. uniprot
Match: A0A453BGD4_AEGTS (AAA_12 domain-containing protein n=4 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453BGD4_AEGTS)

HSP 1 Score: 193 bits (491), Expect = 1.930e-57
Identity = 87/127 (68.50%), Postives = 110/127 (86.61%), Query Frame = 1 
Query:    1 VVTPYEGQRSYLVNHLQRTGPLRSSLYAEIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFGCIVVGNPRILSKNPLWNALVNFFKDHDCLVEGALDNMQPSLMSFPPPLK 381
            V+TPYEGQR+Y+VN++ R G LR  LY EIEVASVDSFQGREKD I+L+CVRSNEHQGIGFL+DPRRLNVALTRAR+G +V+GNP++LSK PLWN+L+  +K+H+CLVEG L+N++ S++ F  P K
Sbjct:  157 VITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVVLGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKK 283
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BLAST of mRNA_H-elongata_contig78067.15477.1 vs. uniprot
Match: A0A0C3PP96_PHLGI (AAA_12 domain-containing protein n=1 Tax=Phlebiopsis gigantea 11061_1 CR5-6 TaxID=745531 RepID=A0A0C3PP96_PHLGI)

HSP 1 Score: 187 bits (474), Expect = 2.000e-57
Identity = 84/125 (67.20%), Postives = 109/125 (87.20%), Query Frame = 1 
Query:    1 VVTPYEGQRSYLVNHLQRTGPLRSSLYAEIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFGCIVVGNPRILSKNPLWNALVNFFKDHDCLVEGALDNMQPSLMSFPPP 375
            VVTPYEGQRSY+VN++Q  G L+  LY EIEVASVD+FQGREKD I+L+CVRSNEHQGIGFL+DPRRLNVALTRA++G +++GNP++LSK+PLW+ L+  +K+ +CLVEG L+N+QPS++ F  P
Sbjct:   78 VVTPYEGQRSYIVNYMQFNGTLKKDLYKEIEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRAKYGVVILGNPKVLSKHPLWHYLLTHYKEKNCLVEGPLNNLQPSMIQFSKP 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78067.15477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L258_9PHAE1.680e-7392.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN00_ECTSI2.740e-7392.86RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A812VX29_SYMMI1.750e-5970.40UPF1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A397FDY7_9STRA3.780e-5869.92AAA_12 domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A7C8YCK5_OPUST6.190e-5867.72RNA helicase (Fragment) n=3 Tax=Opuntia streptacan... [more]
A0A540KQ12_MALBA6.650e-5868.50AAA_12 domain-containing protein n=1 Tax=Malus bac... [more]
A0A0A9CJP8_ARUDO1.330e-5767.72AAA_12 domain-containing protein n=6 Tax=Poaceae T... [more]
A0A446KX30_TRITD1.810e-5768.50AAA_12 domain-containing protein n=1 Tax=Triticum ... [more]
A0A453BGD4_AEGTS1.930e-5768.50AAA_12 domain-containing protein n=4 Tax=Aegilops ... [more]
A0A0C3PP96_PHLGI2.000e-5767.20AAA_12 domain-containing protein n=1 Tax=Phlebiops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78067contigH-elongata_contig78067:507..2137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.1
Seed ortholog evalue2.3e-63
Seed eggNOG ortholog2880.D7FN00
Preferred nameUPF1
KEGG koko:K14326
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
GOsGO:0000003,GO:0000166,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000294,GO:0000723,GO:0000781,GO:0000784,GO:0000785,GO:0000932,GO:0000956,GO:0001101,GO:0001666,GO:0002237,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005737,GO:0005829,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006449,GO:0006464,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007548,GO:0007549,GO:0008026,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008298,GO:0008334,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009506,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009653,GO:0009719,GO:0009725,GO:0009743,GO:0009751,GO:0009753,GO:0009755,GO:0009756,GO:0009790,GO:0009863,GO:0009867,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010182,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010610,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0016462,GO:0016567,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019725,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0022414,GO:0023052,GO:0030054,GO:0030466,GO:0030538,GO:0030554,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032204,GO:0032268,GO:0032269,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032870,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033260,GO:0033554,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034427,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035112,GO:0035145,GO:0035194,GO:0035639,GO:0035690,GO:0035770,GO:0036094,GO:0036211,GO:0036293,GO:0036294,GO:0036464,GO:0040029,GO:0042162,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0042742,GO:0042886,GO:0043021,GO:0043024,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0043412,GO:0043487,GO:0043488,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044530,GO:0044770,GO:0044786,GO:0044877,GO:0045184,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048571,GO:0048598,GO:0048608,GO:0048731,GO:0048806,GO:0048856,GO:0050657,GO:0050658,GO:0050779,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051052,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0051721,GO:0055044,GO:0060249,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070478,GO:0070482,GO:0070555,GO:0070647,GO:0070727,GO:0070887,GO:0071025,GO:0071027,GO:0071028,GO:0071030,GO:0071044,GO:0071166,GO:0071216,GO:0071219,GO:0071222,GO:0071229,GO:0071236,GO:0071310,GO:0071322,GO:0071345,GO:0071347,GO:0071395,GO:0071396,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071453,GO:0071456,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098542,GO:0098687,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901700,GO:1901701,GO:1902679,GO:1903311,GO:1903313,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2000622,GO:2000624,GO:2000815,GO:2001141
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsCOG1112@1,KOG1802@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA helicase
Ec32 orthologEc-25_002930.1
Exons3
Model size381
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78067.15477.1prot_H-elongata_contig78067.15477.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78067 507..2137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.576092-CDS-H-elongata_contig78067:506..6611622931185.576092-CDS-H-elongata_contig78067:506..661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78067 507..661 +
1691679733.0387015-CDS-H-elongata_contig78067:506..6611691679733.0387015-CDS-H-elongata_contig78067:506..661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78067 507..661 +
1622931185.588368-CDS-H-elongata_contig78067:1320..14711622931185.588368-CDS-H-elongata_contig78067:1320..1471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78067 1321..1471 +
1691679733.0550916-CDS-H-elongata_contig78067:1320..14711691679733.0550916-CDS-H-elongata_contig78067:1320..1471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78067 1321..1471 +
1622931185.6042743-CDS-H-elongata_contig78067:2062..21371622931185.6042743-CDS-H-elongata_contig78067:2062..2137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78067 2063..2137 +
1691679733.073046-CDS-H-elongata_contig78067:2062..21371691679733.073046-CDS-H-elongata_contig78067:2062..2137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78067 2063..2137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78067.15477.1

>prot_H-elongata_contig78067.15477.1 ID=prot_H-elongata_contig78067.15477.1|Name=mRNA_H-elongata_contig78067.15477.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
VVTPYEGQRSYLVNHLQRTGPLRSSLYAEIEVASVDSFQGREKDLILLTC
VRSNEHQGIGFLSDPRRLNVALTRARFGCIVVGNPRILSKNPLWNALVNF
FKDHDCLVEGALDNMQPSLMSFPPPLK
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mRNA from alignment at H-elongata_contig78067:507..2137+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78067.15477.1 ID=mRNA_H-elongata_contig78067.15477.1|Name=mRNA_H-elongata_contig78067.15477.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1631bp|location=Sequence derived from alignment at H-elongata_contig78067:507..2137+ (Himanthalia elongata Himel1 dioecious)
GTGGTAACCCCCTATGAAGGCCAGCGATCTTACCTTGTGAACCACCTGCA
GAGGACCGGACCCCTTCGATCCTCACTTTACGCCGAAATCGAAGTGGCCA
GCGTCGACTCGTTCCAAGGCAGGGAAAAGGATCTCATCTTGCTCACCTGC
GTGAGGTGAAGTTTCCTGGAATTTTCCTCCTTGGTTTTACAGGATCAGGG
GTGAAAAAGGGCGTGTTGAAGGCGAACTGAAACGGCGTGTCCCCTCGTGC
GATCTGGGGGGGTCTGGGTGGGTGTGTTGATGGCAATCACAGGTCATAGT
TGTCCTCGTTTTCGAGTGTGTTTTACTTTTATACTATATATGCCAACGTT
ACTAAATAATAGGTATATATATATATATATATATATACCAATGTTACAAG
CTTTCTCCCGCGAGGGCATCAAAAGCAATGAGGACAGGCCCGGCCTCAAG
AAACGGGGCGTGAACGCCCCTTTCTTTCTCTCTCTTTATATTTCTCTTCC
TCCCTCGTGCGGAGTATAGTATATTATAGTATAGTATAGTGTATAGTATA
GTATAGTATATTAATAGTGAGTGTGTTTTTGTTGTTGTGATGGCCTTGTA
GCCGTTCGTCAACCCCCAAATATGGCCCCCACGACACCTACCCCATTCAA
CACTACACCTCTCACTCTCACGGTGTTATTAATAAGGAGGCGTTATTAAT
AGGAGGGGAGGGGAGGGTTTGAATGAGTTTATCATATGTTTAAAAATAAA
TAAATATATATATATATATATATAAGAAACGTCGTGGATGGGGTAACAAC
AAACAAACACGCAGATCCAACGAGCACCAGGGCATCGGATTTTTGTCAGA
TCCTCGACGCCTCAACGTCGCCCTCACAAGAGCTCGGTTCGGGTGCATCG
TCGTCGGCAATCCCCGCATCCTCTCCAAGAACCCTCTCTGGAACGCGCTC
GTAAATTTCTTCAAGGTAGGGGTAGGGGTAGGGGGCTGCCCAACCAGGCA
CTGTGAAAACTGTCGAACCGTTGTTGAGTCAAAAGAATGGCGCCGCACCC
ACGAGGGGCGACCAGCCCGTCAACGCGTTGCTAGGTTCGATCTTTTGGAG
GCGGAACCCCCCCCCCCCCATCGTCCATCGTATATATCCCTATATCTAGT
ATAATATATAGATAAACCATAATTTATTGTGTGTAAAAATCATGTGCGCG
GTGAGGGTGTTCTGCTAGAAAATTAATTCGGTGTTCGCTTCTCCCCCTGT
GAAGACGCAATACGGTAATAAACGGTGAAGTCGAAACGGCGCGCGGGTAG
AGAGGTTCGGCAATACATGGTTCATGGTACATGGCTGCCGTGCGTCGCCC
AGCTCCCCGCAACATTCAGCACCGACGATTCCTCCTATCATACCCCCTGT
ACCCCCCATATGACGGCCTCCTCTACTACCTCCCCTGTGTTGACTCCTCT
GCTGACGCGAGCTGCTACGTTTGGCCGATTTAATTTAATTAAATTTTTTA
TATGCGCTAAAACGCTCGCGCGCGCGCGCTCAATTACTTTCCCCCCGACC
GCGCAGGATCATGACTGCCTGGTGGAGGGAGCCCTTGACAATATGCAGCC
TTCTCTCATGTCTTTCCCGCCCCCACTGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig78067:507..2137+

>mRNA_H-elongata_contig78067.15477.1 ID=mRNA_H-elongata_contig78067.15477.1|Name=mRNA_H-elongata_contig78067.15477.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig78067:507..2137+ (Himanthalia elongata Himel1 dioecious)
GTGGTAACCCCCTATGAAGGCCAGCGATCTTACCTTGTGAACCACCTGCA
GAGGACCGGACCCCTTCGATCCTCACTTTACGCCGAAATCGAAGTGGCCA
GCGTCGACTCGTTCCAAGGCAGGGAAAAGGATCTCATCTTGCTCACCTGC
GTGAGGTGGTAACCCCCTATGAAGGCCAGCGATCTTACCTTGTGAACCAC
CTGCAGAGGACCGGACCCCTTCGATCCTCACTTTACGCCGAAATCGAAGT
GGCCAGCGTCGACTCGTTCCAAGGCAGGGAAAAGGATCTCATCTTGCTCA
CCTGCGTGAGATCCAACGAGCACCAGGGCATCGGATTTTTGTCAGATCCT
CGACGCCTCAACGTCGCCCTCACAAGAGCTCGGTTCGGGTGCATCGTCGT
CGGCAATCCCCGCATCCTCTCCAAGAACCCTCTCTGGAACGCGCTCGTAA
ATTTCTTCAAGATCCAACGAGCACCAGGGCATCGGATTTTTGTCAGATCC
TCGACGCCTCAACGTCGCCCTCACAAGAGCTCGGTTCGGGTGCATCGTCG
TCGGCAATCCCCGCATCCTCTCCAAGAACCCTCTCTGGAACGCGCTCGTA
AATTTCTTCAAGGATCATGACTGCCTGGTGGAGGGAGCCCTTGACAATAT
GCAGCCTTCTCTCATGTCTTTCCCGCCCCCACTGAAGGATCATGACTGCC
TGGTGGAGGGAGCCCTTGACAATATGCAGCCTTCTCTCATGTCTTTCCCG
CCCCCACTGAAG
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