mRNA_H-elongata_contig78038.15474.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig78038.15474.1
Unique NamemRNA_H-elongata_contig78038.15474.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig78038.15474.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 4.330e-22
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 2 
Query:  287 KADLLASVNMEQAFERQKERAAAGDDVPYVLARTLRSNIQCNAAIALKAKGSGNQCKRGACMERAMSMFCGKKGEGIPREVVLALARY 550
            +A ++A V+++   +RQKER + GD+V YVLART+R  +Q  AA  + A G GNQC+RG C  RAM MF GK  EGIPR+VVLAL RY
Sbjct:  136 QAHIIAGVSIQHVLDRQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCRRGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223
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BLAST of mRNA_H-elongata_contig78038.15474.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.210e-11
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 2 
Query:  287 KADLLASVNMEQAFERQKERAAAGDDVPYVLARTLRSNIQCNAAIALKAKGSGNQCKRGACMERAMSMFCGKKG 508
            +A ++A V+++   +RQK R + GD+VPYVLART+RSN+Q  AA  + A G GNQC+RG        MFC + G
Sbjct:  103 QAHIIAGVSIQHVLDRQKARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG--------MFCSRYG 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig78038.15474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE4.330e-2255.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI1.210e-1147.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig78038contigH-elongata_contig78038:5..1000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size579
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig78038.15474.1prot_H-elongata_contig78038.15474.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig78038 31..687 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.3054092-UTR-H-elongata_contig78038:4..301622931185.3054092-UTR-H-elongata_contig78038:4..30Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78038 5..30 -
1691679732.9280293-UTR-H-elongata_contig78038:4..301691679732.9280293-UTR-H-elongata_contig78038:4..30Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78038 5..30 -
1622931185.382439-UTR-H-elongata_contig78038:687..10001622931185.382439-UTR-H-elongata_contig78038:687..1000Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78038 688..1000 -
1691679732.952597-UTR-H-elongata_contig78038:687..10001691679732.952597-UTR-H-elongata_contig78038:687..1000Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig78038 688..1000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931185.340528-CDS-H-elongata_contig78038:30..2641622931185.340528-CDS-H-elongata_contig78038:30..264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78038 31..264 -
1691679732.937272-CDS-H-elongata_contig78038:30..2641691679732.937272-CDS-H-elongata_contig78038:30..264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78038 31..264 -
1622931185.3656414-CDS-H-elongata_contig78038:681..6871622931185.3656414-CDS-H-elongata_contig78038:681..687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78038 682..687 -
1691679732.944712-CDS-H-elongata_contig78038:681..6871691679732.944712-CDS-H-elongata_contig78038:681..687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig78038 682..687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig78038.15474.1

>prot_H-elongata_contig78038.15474.1 ID=prot_H-elongata_contig78038.15474.1|Name=mRNA_H-elongata_contig78038.15474.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MEQAFERQKERAAAGDDVPYVLARTLRSNIQCNAAIALKAKGSGNQCKRG
ACMERAMSMFCGKKGEGIPREVVLALARY*
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mRNA from alignment at H-elongata_contig78038:5..1000-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig78038.15474.1 ID=mRNA_H-elongata_contig78038.15474.1|Name=mRNA_H-elongata_contig78038.15474.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=996bp|location=Sequence derived from alignment at H-elongata_contig78038:5..1000- (Himanthalia elongata Himel1 dioecious)
CCAATACCTCGGTAGAACACCGATGCTAGGTCTGACAGTGGCGATAAGAG
GCTCGAAGAAACGTTATGGCCGATAGCCGGCATTCTGGACGAGCCGCTCG
ACTGGGCGGCAGAACCCAATGCTGCCGCCCGTGCCCTGTTCTTGAAAGCC
CAGACTGACCCGGTAAACATCCGCCAGTTCCTCCGAGGGAAAGCGACTGA
GCTCGCTGAGCCGCGCAGACACGCGACCCCGCTGCCTCGTTGGGACCAGA
AGCATCCCAATCTGCACACCACCTGCGGTAGCCCTGAAGGCGGATCTATT
AGCGAGCGTAAATATGGAGGTGAGATGCGTATTGGTTTGTGAGGTGGATG
CAAGTACTTTTATTTTGTAGTGTGTCACTGCTGTATCCGCTCTTGTACAT
ACTTTGTACTTTATTTTCTTATCATGGTAGTACAGCAGTAGTAGTGCCCT
CCCTGAGACGCCTCTCATGACGAACACGTGGGGTGTTTTATTCTCCGTCG
CCGCACTACGGACAACTATCTCGCTCTCAACTTTTCAGTCGAAGTGTATG
CGCTCAAATATGGGTCCCTGGTTGATACCGCTATAATACCATATGTTGCT
GCTTTATAATAGTTAGTATGTATATACGATGTGTTGTATTCGCAGGAGGT
GTCTTGGCCCCGTCTATTGCTTGGTGTGGCGACCTTTGATATTTGTACCT
TTCCTGCCCCTGCCGATGCGTTCCATTATTTTCCAGCAAGCGTTCGAACG
GCAAAAGGAGCGCGCAGCTGCCGGCGATGACGTGCCATATGTCCTAGCTC
GCACCCTGAGGAGCAATATTCAGTGCAACGCTGCGATAGCCCTGAAGGCG
AAGGGTAGTGGAAACCAGTGCAAGCGTGGCGCTTGTATGGAGCGTGCCAT
GTCGATGTTCTGCGGAAAGAAAGGGGAGGGCATTCCTAGGGAGGTTGTGT
TGGCCTTGGCAAGGTACTAACTATATAATATGTATGTGTGTGGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig78038:5..1000-

>mRNA_H-elongata_contig78038.15474.1 ID=mRNA_H-elongata_contig78038.15474.1|Name=mRNA_H-elongata_contig78038.15474.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig78038:5..1000- (Himanthalia elongata Himel1 dioecious)
ATGGAGATGGAGCAAGCGTTCGAACGGCAAAAGGAGCGCGCAGCTGCCGG
CGATGACGTGCCATATGTCCTAGCTCGCACCCTGAGGAGCAATATTCAGT
GCAACGCTGCGATAGCCCTGAAGGCGAAGGGTAGTGGAAACCAGTGCAAG
CGTGGCGCTTGTATGGAGCGTGCCATGTCGATGTTCTGCGGAAAGAAAGG
GGAGGGCATTCCTAGGGAGGTTGTGTTGGCCTTGGCAAGGTACTAACAAG
CGTTCGAACGGCAAAAGGAGCGCGCAGCTGCCGGCGATGACGTGCCATAT
GTCCTAGCTCGCACCCTGAGGAGCAATATTCAGTGCAACGCTGCGATAGC
CCTGAAGGCGAAGGGTAGTGGAAACCAGTGCAAGCGTGGCGCTTGTATGG
AGCGTGCCATGTCGATGTTCTGCGGAAAGAAAGGGGAGGGCATTCCTAGG
GAGGTTGTGTTGGCCTTGGCAAGGTACTAA
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