mRNA_H-elongata_contig7800.15468.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7800.15468.1
Unique NamemRNA_H-elongata_contig7800.15468.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7800.15468.1 vs. uniprot
Match: A0A6H5L1C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1C6_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 4.550e-61
Identity = 106/163 (65.03%), Postives = 125/163 (76.69%), Query Frame = 1
Query:    7 RISITTCIISILAVPALAVWGTKSVPMAGQVAVMGTALAGAGGSTLLLNLCVSPYVLRLAEVIID--ANGGESDTTSPP-NIQHRSGKPRLMGRRFVAERMNLFGFPTTSEFYIDQVEPMPKTSRPFVSFRADGEYYFVQGNQMADKDLLRTLLGRELKQHEK 486
            R+SITTC+ISILAVPAL ++G +SVP+AGQVAVM  AL G G STLLLNLCVSPYV R+AE+     A G + +    P N  +R G P+L GRRF  ERMN+FG   T+EF ID+VEPMP TSRPFVSF+A G YYF+QG+ MADK LL+TLLGRELK HEK
Sbjct:  118 RVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGGVAQGEDGEVRKKPRNKTNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEK 280          
BLAST of mRNA_H-elongata_contig7800.15468.1 vs. uniprot
Match: D7FID1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID1_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 8.880e-54
Identity = 92/144 (63.89%), Postives = 108/144 (75.00%), Query Frame = 1
Query:   64 WGTKSVPMAGQVAVMGTALAGAGGSTLLLNLCVSPYVLRLAEVIID--ANGGESDTTSPP-NIQHRSGKPRLMGRRFVAERMNLFGFPTTSEFYIDQVEPMPKTSRPFVSFRADGEYYFVQGNQMADKDLLRTLLGRELKQHEK 486
            +G +SVP+AGQVAVM  AL G G STLLLNLCVSPYV R+AE+     A G + D    P N ++R G P+L GRRF  ERMN+FG   T+EF ID+VEPMP TSRPFVSF+A G YYF+QG+ MADK LL+TLLGRELK HEK
Sbjct:    2 YGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGGVAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEK 145          
BLAST of mRNA_H-elongata_contig7800.15468.1 vs. uniprot
Match: A0A835ZAD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD4_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.820e-29
Identity = 71/160 (44.38%), Postives = 92/160 (57.50%), Query Frame = 1
Query:    7 RISITTCIISILAVPALAVWGTKSVPMAGQVAVMGTALAGAGGSTLLLNLCVSPYVLRLAEVIIDANGGESDTTSPPNIQHRSGKPRLMGRRFVAERMNLFGFPTTSEFYIDQVEPMPKTSRPFVSFRADGEYYFVQGNQMADKDLLRTLLGRELKQHEK 486
            R+SITTC +S++  P L V G  SVP++GQ+AV G AL  A GST LL+ C  PYV +L+E+      G  D            K RL    F AE +++ G P  +EF +  V+P P   RPFVSF+A   YYF+QG  + DK LL+ LLGR L   EK
Sbjct:   64 RVSITTCAMSMIGTPLLLVLGNDSVPLSGQIAVTGVALTAAVGSTALLHWCTRPYVHKLSEI---TGRGAID------------KARL----FKAELLSILGRPRVTEFRLGDVQPQPDALRPFVSFKARDNYYFIQGEVLQDKALLKELLGRPLDDSEK 204          
BLAST of mRNA_H-elongata_contig7800.15468.1 vs. uniprot
Match: A0A2D4BZQ4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZQ4_PYTIN)

HSP 1 Score: 67.8 bits (164), Expect = 9.280e-11
Identity = 45/157 (28.66%), Postives = 76/157 (48.41%), Query Frame = 1
Query:   10 ISITTCIISILAVPALAVWGTKSVPMAGQVAVMGTALAGAGGSTLLLNLCVSPYVLRLAEVIIDANGGESDTTSPPNIQHRSGKPRLMGRRFVAERMNLFGFPTTSEFYIDQVEPMPKTSRPFVSFRADGEYYFVQGNQMADKDLLRTLLGRELKQH 480
            +S+T+C ++++ +PAL V   +S  + G+ A+ GT +    G+T L ++   PYV+R+    ID +                        R  AE + LF   TT++F +  V   PK+  P +SFRA    YF+    + D DL++  +G + K H
Sbjct:   80 VSVTSCALTLVGMPALCVLSEQSASIIGKWAMCGTIMLFGLGTTSLYHVLFKPYVMRMW---IDRSEN----------------------RVTAETVTLFARLTTTDFALGDVTRPPKSMHPMISFRAGEXDYFIHPECLQDDDLVKVFMGEDFKVH 211          
BLAST of mRNA_H-elongata_contig7800.15468.1 vs. uniprot
Match: A0A6U0KSZ0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0KSZ0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.900e-8
Identity = 46/152 (30.26%), Postives = 66/152 (43.42%), Query Frame = 1
Query:    7 RISITTCIISILAVPALAVWGTKSVPMAGQVAVMGTALAGAGGSTLLLNLCVSPYVLRLAEVIIDANGGESDTTSPPNIQHRSGKPRLMGRRFVAERMNLFGFPTTSEFYIDQVEPMPKTSRPFVSFRADGEYYFVQGNQMADKDLLRTLLG 462
            R+S+T+  + ++ VP L       VP  GQ+AV GTA+  A GST+ L+ C SPYV +L  V         D TS                +  A   N+ G    + F   +       SRPF +F A G   +V    + D +L   L+G
Sbjct:    2 RVSVTSAALGVVGVPLLMALHGGDVPATGQLAVGGTAIMAAAGSTVALSFCFSPYVHKLERV---------DDTST---------------QIKATTANILGMRVETSFDPSKDVGKAAGSRPFCNFTAKGVPMYVHPEMVYDDELRLQLIG 129          
BLAST of mRNA_H-elongata_contig7800.15468.1 vs. uniprot
Match: A0A8J2ST31_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2ST31_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.480e-8
Identity = 46/144 (31.94%), Postives = 66/144 (45.83%), Query Frame = 1
Query:   10 ISITTCIISILAVP-ALAVWGTKSVPMAGQVAVMGTALAGAGGSTLLLNLCVSPYVLRLAEVIIDANGGESDTTSPPNIQHRSGKPRLMGRRFVAERMNLFGFPTTSEFYIDQVEPMPKTSRPFVSFRADGEYYFVQGNQMADK 438
            +S+TT   S++  P AL    + +V + G+VAV GTA+    GST  L+ C  P+V  ++                             G R VA RM++     T EF    V+  P T RPFV+F A GE +FV  +  AD+
Sbjct:   60 VSLTTLATSLMLPPMALIFKSSATVSLMGKVAVGGTAMVAGVGSTAALHFCTLPFVFEMSRE---------------------------GDRIVATRMDILARRVTHEFREADVKREPTTLRPFVTFEAAGESFFVTKSGFADE 176          
BLAST of mRNA_H-elongata_contig7800.15468.1 vs. uniprot
Match: A0A6U3UR26_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UR26_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.270e-6
Identity = 49/158 (31.01%), Postives = 70/158 (44.30%), Query Frame = 1
Query:    7 RISITTCIISILAVPALAVWGTKS-VPMAGQVAVMGTALAGAGGSTLLLNLCVSPYVLRLAEVIIDANGGESDTTSPPNIQHRSGKPRLMGRRFVAERMNLFGFPTTSEFYIDQVEPMPKTSRPFVSFRADGEYYFVQGNQMADKDLLRT-LLGRELK 474
            R+SITT  +S++ VP L    T   +P  G +AV GTA+  A GST+ L+ C SPY+  L  VI++       TT                R  +A ++     P T     D  +P     RPF +F  +G        ++   D LR  L+G E K
Sbjct:  124 RVSITTAAVSLVGVPLLVALKTGGDIPAVGSMAVGGTAVLAATGSTIALSYCFSPYIQTLERVIVEEKELVKATT----------------RNVMAMQVETIFDPAT-----DVSKPNKGNFRPFCNFMVNGTIPMYVHPELVSDDTLRVQLVGEEEK 260          
BLAST of mRNA_H-elongata_contig7800.15468.1 vs. uniprot
Match: UPI0009E48F37 (uncharacterized protein LOC110023651 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E48F37)

HSP 1 Score: 51.6 bits (122), Expect = 8.750e-5
Identity = 45/153 (29.41%), Postives = 64/153 (41.83%), Query Frame = 1
Query:   10 ISITTCIISILAVPALAVWGTKSVPMAGQVAVMGTALAGAGGSTLLLNLCVSPYVLRLAEVIIDANGGESDTTSPPNIQHRSGKPRLMGRRFVAERMNLFGFPTTSEFYIDQVEPMPKTSRPFVSFRADGEYYFVQGNQMADKDLLRTLLGRE 468
            +S++TC +S    P +    +  + +  + AV  T +  +  +T  L+  VSPYV +L                    + R G        F  E M               V P P+T+RPFVSFRADG +YFV G    +K LL  L  RE
Sbjct:  115 LSLSTCCLSASLGPVITFMTSPDMNVIVKGAVASTVIVLSASTTAALHWFVSPYVHKL--------------------RWRPGSDS-----FEVEMMTWLATYVPRTIKFSSVRP-PETNRPFVSFRADGNFYFVDGEHCHNKALLARLTPRE 241          
BLAST of mRNA_H-elongata_contig7800.15468.1 vs. uniprot
Match: A0A1D1XZ27_9ARAE (Transmembrane protein 70, mitochondrial n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XZ27_9ARAE)

HSP 1 Score: 51.6 bits (122), Expect = 8.800e-5
Identity = 41/153 (26.80%), Postives = 68/153 (44.44%), Query Frame = 1
Query:   10 ISITTCIISILAVPALAVWGTKSVPMAGQVAVMGTALAGAGGSTLLLNLCVSPYVLRLAEVIIDANGGESDTTSPPNIQHRSGKPRLMGRRFVAERMNLFGFPTTSEFYIDQVEPMPKTSRPFVSFRADGEYYFVQGNQMADKDLLRTLLGRE 468
            +S++TC +S+   P +    +  + +  + AV  T +  +  +T  L+  VSPYV +L                    Q + G        F AE M+    P         + P P+T+RPFV+F+ADG +YF+ G    +K LL  L  ++
Sbjct:  116 LSLSTCCLSVSLGPVITFMTSPDMNVILKGAVASTVIFLSASTTAALHWFVSPYVHKL--------------------QWQPGSDS-----FEAEMMSWLATPIGRTVKFSDIRP-PETNRPFVTFKADGNFYFIDGEHCHNKSLLSKLTPKK 242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7800.15468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5L1C6_9PHAE4.550e-6165.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FID1_ECTSI8.880e-5463.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZAD4_9STRA1.820e-2944.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4BZQ4_PYTIN9.280e-1128.66Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6U0KSZ0_9STRA5.900e-830.26Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A8J2ST31_9STRA7.480e-831.94Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6U3UR26_9STRA1.270e-631.01Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
UPI0009E48F378.750e-529.41uncharacterized protein LOC110023651 n=1 Tax=Phala... [more]
A0A1D1XZ27_9ARAE8.800e-526.80Transmembrane protein 70, mitochondrial n=1 Tax=An... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7800contigH-elongata_contig7800:3881..4968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue4.6e-08
Seed eggNOG ortholog115417.EPrPW00000020765
Preferred nameTMEM70
KEGG koko:K17966
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022607,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032592,GO:0033615,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043461,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0065003,GO:0070013,GO:0070071,GO:0071840,GO:0098573
EggNOG free text desc.Source PGD
EggNOG OGs1MBGE@121069,KOG4478@1,KOG4478@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001450.1
Exons3
Model size492
Cds size492
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7800.15468.1prot_H-elongata_contig7800.15468.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7800 3881..4968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.8919852-CDS-H-elongata_contig7800:3880..40691622931184.8919852-CDS-H-elongata_contig7800:3880..4069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7800 3881..4069 +
1691679732.7837064-CDS-H-elongata_contig7800:3880..40691691679732.7837064-CDS-H-elongata_contig7800:3880..4069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7800 3881..4069 +
1622931184.9122875-CDS-H-elongata_contig7800:4353..45091622931184.9122875-CDS-H-elongata_contig7800:4353..4509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7800 4354..4509 +
1691679732.796662-CDS-H-elongata_contig7800:4353..45091691679732.796662-CDS-H-elongata_contig7800:4353..4509Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7800 4354..4509 +
1622931184.938359-CDS-H-elongata_contig7800:4821..49681622931184.938359-CDS-H-elongata_contig7800:4821..4968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7800 4822..4968 +
1691679732.8083544-CDS-H-elongata_contig7800:4821..49681691679732.8083544-CDS-H-elongata_contig7800:4821..4968Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7800 4822..4968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7800.15468.1

>prot_H-elongata_contig7800.15468.1 ID=prot_H-elongata_contig7800.15468.1|Name=mRNA_H-elongata_contig7800.15468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
LVRISITTCIISILAVPALAVWGTKSVPMAGQVAVMGTALAGAGGSTLLL
NLCVSPYVLRLAEVIIDANGGESDTTSPPNIQHRSGKPRLMGRRFVAERM
NLFGFPTTSEFYIDQVEPMPKTSRPFVSFRADGEYYFVQGNQMADKDLLR
TLLGRELKQHEKQ*
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mRNA from alignment at H-elongata_contig7800:3881..4968+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7800.15468.1 ID=mRNA_H-elongata_contig7800.15468.1|Name=mRNA_H-elongata_contig7800.15468.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1088bp|location=Sequence derived from alignment at H-elongata_contig7800:3881..4968+ (Himanthalia elongata Himel1 dioecious)
CTTGTCAGGATCTCGATCACCACATGTATCATCAGCATTTTGGCCGTGCC GGCGTTGGCTGTGTGGGGAACCAAGAGCGTTCCCATGGCCGGTCAAGTCG CCGTAATGGGTACGGCGCTGGCTGGGGCCGGAGGATCCACGCTTCTCTTG AATCTCTGCGTCAGCCCCTATGTGCTTCGTTTGGCGGAGGTGAGGCGTCT TGGGATGTCTTGGCTAGCCTTTCCTCTACATCCAGGTCGAGGGCAAACAG TACCATGCGTACCGTATTGTTGTGCTAATCCCGCTGTAGAGAGGATGACG AGGAACCCTTAAAACTAATCCGTAAACGAGTCTCGATAAACCTATCAACT TGGTTGTTGGGGAAGCCCCCCCCCCGCTGTACCCTTCGCCTTCCTCTCTC ATCATCTGTGAGCGCTTGGACATTTGGGCGCCAACGTCCAGGAGGCCATT TTGTTTAACCATTTTTAACGCAGGTAATCATCGACGCCAACGGCGGAGAG AGTGACACGACCTCACCGCCAAACATCCAACACCGCTCTGGGAAGCCGAG ACTGATGGGCCGTCGATTTGTAGCGGAAAGGATGAACCTCTTTGGGTTCC CAACAACGTCGGAGTTCTACATCGACCAGGTAGGCTGAAGACAATATCAC ACCGCGCGAACAGCGAGCGTGATGACACACCGCGCGCACAACGGCCACAT TAATGTCTTTGGCCTTCTAGGGGTCATAACAGGCACAATGACTCTGAATC TTTGCATTTGGTGTTGTCAACTGGCCGTCGAGAAAATTTGCTTTCTTCAT GCCAGCCAAGCCGGCAATCAGTTGCAAGGTCTAGAACGCGCTGGGGGAGA AGGTCAACCAACCCCGTAATACGCTGAGATCGGGCCATGGAGCTCTTCAA AGTGTTTTACTCAGCCGGGTGCCTCGCGCGACATGTCCCAGGTCGAGCCC ATGCCGAAAACATCAAGACCGTTCGTATCGTTCAGGGCCGACGGCGAGTA CTACTTCGTTCAAGGGAATCAAATGGCGGACAAGGACTTATTGCGAACTC TTTTGGGAAGAGAACTCAAGCAGCACGAGAAACAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig7800:3881..4968+

>mRNA_H-elongata_contig7800.15468.1 ID=mRNA_H-elongata_contig7800.15468.1|Name=mRNA_H-elongata_contig7800.15468.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig7800:3881..4968+ (Himanthalia elongata Himel1 dioecious)
CTTGTCAGGATCTCGATCACCACATGTATCATCAGCATTTTGGCCGTGCC
GGCGTTGGCTGTGTGGGGAACCAAGAGCGTTCCCATGGCCGGTCAAGTCG
CCGTAATGGGTACGGCGCTGGCTGGGGCCGGAGGATCCACGCTTCTCTTG
AATCTCTGCGTCAGCCCCTATGTGCTTCGTTTGGCGGAGCTTGTCAGGAT
CTCGATCACCACATGTATCATCAGCATTTTGGCCGTGCCGGCGTTGGCTG
TGTGGGGAACCAAGAGCGTTCCCATGGCCGGTCAAGTCGCCGTAATGGGT
ACGGCGCTGGCTGGGGCCGGAGGATCCACGCTTCTCTTGAATCTCTGCGT
CAGCCCCTATGTGCTTCGTTTGGCGGAGGTAATCATCGACGCCAACGGCG
GAGAGAGTGACACGACCTCACCGCCAAACATCCAACACCGCTCTGGGAAG
CCGAGACTGATGGGCCGTCGATTTGTAGCGGAAAGGATGAACCTCTTTGG
GTTCCCAACAACGTCGGAGTTCTACATCGACCAGGTAATCATCGACGCCA
ACGGCGGAGAGAGTGACACGACCTCACCGCCAAACATCCAACACCGCTCT
GGGAAGCCGAGACTGATGGGCCGTCGATTTGTAGCGGAAAGGATGAACCT
CTTTGGGTTCCCAACAACGTCGGAGTTCTACATCGACCAGGTCGAGCCCA
TGCCGAAAACATCAAGACCGTTCGTATCGTTCAGGGCCGACGGCGAGTAC
TACTTCGTTCAAGGGAATCAAATGGCGGACAAGGACTTATTGCGAACTCT
TTTGGGAAGAGAACTCAAGCAGCACGAGAAACAATAGGTCGAGCCCATGC
CGAAAACATCAAGACCGTTCGTATCGTTCAGGGCCGACGGCGAGTACTAC
TTCGTTCAAGGGAATCAAATGGCGGACAAGGACTTATTGCGAACTCTTTT
GGGAAGAGAACTCAAGCAGCACGAGAAACAATAG
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