mRNA_H-elongata_contig77946.15467.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77946.15467.1
Unique NamemRNA_H-elongata_contig77946.15467.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77946.15467.1 vs. uniprot
Match: A0A6H5J605_9PHAE (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J605_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 3.230e-40
Identity = 86/137 (62.77%), Postives = 97/137 (70.80%), Query Frame = 1 
Query:   10 LEKENEALRRRVADLEREKIATLSTLPRNGGVTAIGNSAPHPAVETSTATGRACY----GTCQELSRESLGKAGMTAAEIARYSRHLLVPAVGVEGQRNLLGKTCLVIGAGGLASAVLPYLAGAGVGHLKVIDFDTV 408
            L+ ENEALR R+A LE    A    LP     + +  +  H    +S  +   C     G   E+SRESLGKAGMTAAEIARYSRHLLVPAVGVEGQRNLL KTCLVIGAGGLASAVLPYLAGAGVGH+K+IDFD +
Sbjct:   25 LKAENEALRARIAALE----AAAGPLPDQPSGSTVQPNTTHVESSSSVGSTSCCSNNKNGVGNEVSRESLGKAGMTAAEIARYSRHLLVPAVGVEGQRNLLDKTCLVIGAGGLASAVLPYLAGAGVGHIKIIDFDKI 157
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BLAST of mRNA_H-elongata_contig77946.15467.1 vs. uniprot
Match: A0A6J4GZ90_9PSEU (Cysteine synthesis adenylyltransferase/sulfurtransferase n=1 Tax=uncultured Actinomycetospora sp. TaxID=1135996 RepID=A0A6J4GZ90_9PSEU)

HSP 1 Score: 79.7 bits (195), Expect = 8.160e-17
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:  214 AGMTAAEIARYSRHLLVPAVGVEGQRNLLGKTCLVIGAGGLASAVLPYLAGAGVGHLKVIDFDTV 408
            A +T  E+ARYSRHL++P VGV+GQ+ L     LV+GAGGL S  L YLA AGVG L V+DFD V
Sbjct:   12 AELTKDEVARYSRHLIIPDVGVDGQKRLKNAKVLVVGAGGLGSPALLYLAAAGVGTLGVVDFDVV 76
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BLAST of mRNA_H-elongata_contig77946.15467.1 vs. uniprot
Match: A0A561E1A9_9MICO (Adenylyltransferase/sulfurtransferase n=1 Tax=Rudaeicoccus suwonensis TaxID=657409 RepID=A0A561E1A9_9MICO)

HSP 1 Score: 83.6 bits (205), Expect = 3.160e-16
Identity = 41/63 (65.08%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:  220 MTAAEIARYSRHLLVPAVGVEGQRNLLGKTCLVIGAGGLASAVLPYLAGAGVGHLKVIDFDTV 408
            +TAAEI RYSRHLL+P VG +GQR L     LV+GAGGLA+ VL Y A AGVGHL V+D D V
Sbjct:   13 LTAAEIGRYSRHLLLPEVGQDGQRRLAAARVLVVGAGGLAAPVLSYAAAAGVGHLTVVDDDAV 75
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BLAST of mRNA_H-elongata_contig77946.15467.1 vs. uniprot
Match: A0A1Q9P1U8_HEILC (Putative adenylyltransferase/sulfurtransferase MoeZ n=2 Tax=Heimdallarchaeota archaeon (strain LC_2) TaxID=1841597 RepID=A0A1Q9P1U8_HEILC)

HSP 1 Score: 78.6 bits (192), Expect = 3.700e-16
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:  199 ESLGKAGMTAAEIARYSRHLLVPAVGVEGQRNLLGKTCLVIGAGGLASAVLPYLAGAGVGHLKVIDFDTV 408
            +S   + +T  EI RYSRHL++P VGVEGQ+ L     L+IGAGGL S +  YLA AGVG L ++DFD V
Sbjct:   10 QSSNDSDLTHKEITRYSRHLIMPEVGVEGQKRLRDAKVLIIGAGGLGSPIAMYLAAAGVGTLGIVDFDVV 79
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BLAST of mRNA_H-elongata_contig77946.15467.1 vs. uniprot
Match: A0A2W4IU88_9PSEU (Adenylyltransferase/sulfurtransferase MoeZ (Fragment) n=1 Tax=Thermocrispum agreste TaxID=37925 RepID=A0A2W4IU88_9PSEU)

HSP 1 Score: 82.4 bits (202), Expect = 4.090e-16
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:  214 AGMTAAEIARYSRHLLVPAVGVEGQRNLLGKTCLVIGAGGLASAVLPYLAGAGVGHLKVIDFDTV 408
            A +T  EIARYSRHL++P VGV+GQ+ L     LVIGAGGL S  L YLA AGVG L ++DFDTV
Sbjct:   13 AELTKEEIARYSRHLIIPDVGVDGQKRLKNAKVLVIGAGGLGSPALLYLAAAGVGTLGIVDFDTV 77
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BLAST of mRNA_H-elongata_contig77946.15467.1 vs. uniprot
Match: UPI001C3F11CC (molybdopterin-synthase adenylyltransferase MoeB n=1 Tax=Pseudomonas sp. MAFF 301350 TaxID=2854028 RepID=UPI001C3F11CC)

HSP 1 Score: 83.2 bits (204), Expect = 4.230e-16
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:  214 AGMTAAEIARYSRHLLVPAVGVEGQRNLLGKTCLVIGAGGLASAVLPYLAGAGVGHLKVIDFDTV 408
            A +++ EI+RYSRHLL+P VG+EGQR L G   LVIGAGGL S  L YLA AGVG L ++DFD V
Sbjct:   11 ARLSSEEISRYSRHLLIPDVGLEGQRRLKGSRVLVIGAGGLGSPTLLYLAAAGVGTLGIVDFDVV 75
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BLAST of mRNA_H-elongata_contig77946.15467.1 vs. uniprot
Match: A0A2G6DTQ2_9MICO (Adenylyltransferase/sulfurtransferase MoeZ (Fragment) n=1 Tax=Micrococcales bacterium TaxID=2026762 RepID=A0A2G6DTQ2_9MICO)

HSP 1 Score: 79.7 bits (195), Expect = 5.030e-16
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:  220 MTAAEIARYSRHLLVPAVGVEGQRNLLGKTCLVIGAGGLASAVLPYLAGAGVGHLKVIDFDTV 408
            M+ A  +RYSRH+L+P +GV+GQR L     LVIGAGGL S V+ YLA AG+G L+++DFD V
Sbjct:    1 MSVAATSRYSRHILLPEIGVQGQRRLSSSRVLVIGAGGLGSPVIMYLAAAGIGTLRIVDFDVV 63
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BLAST of mRNA_H-elongata_contig77946.15467.1 vs. uniprot
Match: A0A328YN70_9BURK (Adenylyltransferase/sulfurtransferase n=1 Tax=Acidovorax anthurii TaxID=78229 RepID=A0A328YN70_9BURK)

HSP 1 Score: 82.8 bits (203), Expect = 5.790e-16
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:  220 MTAAEIARYSRHLLVPAVGVEGQRNLLGKTCLVIGAGGLASAVLPYLAGAGVGHLKVIDFDTV 408
            +T+ EIARYSRHLL+P +G+EGQR L     LVIGAGGL S VL YLA AGVGH+ +++FD V
Sbjct:   13 LTSDEIARYSRHLLLPDLGMEGQRRLKAARVLVIGAGGLGSPVLLYLAAAGVGHIGIVEFDHV 75
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BLAST of mRNA_H-elongata_contig77946.15467.1 vs. uniprot
Match: UPI0003647CC6 (ThiF family adenylyltransferase n=1 Tax=Pseudomonas putida TaxID=303 RepID=UPI0003647CC6)

HSP 1 Score: 79.7 bits (195), Expect = 5.850e-16
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:  214 AGMTAAEIARYSRHLLVPAVGVEGQRNLLGKTCLVIGAGGLASAVLPYLAGAGVGHLKVIDFDTV 408
            A +++ EI+RYSRHLL+P VG++GQR L     LVIGAGGL S  L YLA AGVG L ++DFD V
Sbjct:   11 AQLSSEEISRYSRHLLIPDVGLDGQRRLKSSKVLVIGAGGLGSPTLLYLAAAGVGTLGIVDFDVV 75
[Close]
BLAST of mRNA_H-elongata_contig77946.15467.1 vs. uniprot
Match: UPI001EE797E7 (ThiF family adenylyltransferase n=1 Tax=Serinicoccus chungangensis TaxID=767452 RepID=UPI001EE797E7)

HSP 1 Score: 82.8 bits (203), Expect = 5.950e-16
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:  220 MTAAEIARYSRHLLVPAVGVEGQRNLLGKTCLVIGAGGLASAVLPYLAGAGVGHLKVIDFDTV 408
            +T+A+I+RYSRHLLVP +G+E QR LL     VIGAGGL S ++ YLA AGVGHL +ID D +
Sbjct:   15 LTSAQISRYSRHLLVPGMGIEAQRRLLNARVAVIGAGGLGSPIVSYLAAAGVGHLTIIDDDVI 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77946.15467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J605_9PHAE3.230e-4062.77Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
A0A6J4GZ90_9PSEU8.160e-1760.00Cysteine synthesis adenylyltransferase/sulfurtrans... [more]
A0A561E1A9_9MICO3.160e-1665.08Adenylyltransferase/sulfurtransferase n=1 Tax=Ruda... [more]
A0A1Q9P1U8_HEILC3.700e-1654.29Putative adenylyltransferase/sulfurtransferase Moe... [more]
A0A2W4IU88_9PSEU4.090e-1663.08Adenylyltransferase/sulfurtransferase MoeZ (Fragme... [more]
UPI001C3F11CC4.230e-1663.08molybdopterin-synthase adenylyltransferase MoeB n=... [more]
A0A2G6DTQ2_9MICO5.030e-1657.14Adenylyltransferase/sulfurtransferase MoeZ (Fragme... [more]
A0A328YN70_9BURK5.790e-1663.49Adenylyltransferase/sulfurtransferase n=1 Tax=Acid... [more]
UPI0003647CC65.850e-1660.00ThiF family adenylyltransferase n=1 Tax=Pseudomona... [more]
UPI001EE797E75.950e-1660.32ThiF family adenylyltransferase n=1 Tax=Serinicocc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77946contigH-elongata_contig77946:855..2687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue4.5e-25
Seed eggNOG ortholog2880.D7FNE1
Preferred namecnxF
KEGG rclassRC00043
KEGG koko:K11996,ko:K18469
KEGG ReactionR07459,R07461
KEGG Pathwayko04122,map04122
GOsGO:0000003,GO:0001403,GO:0001558,GO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0003824,GO:0004792,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006725,GO:0006732,GO:0006753,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0007114,GO:0008033,GO:0008150,GO:0008152,GO:0008265,GO:0008641,GO:0009058,GO:0009108,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009451,GO:0009987,GO:0010467,GO:0010570,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016782,GO:0016783,GO:0016874,GO:0016877,GO:0018117,GO:0018130,GO:0018175,GO:0019008,GO:0019538,GO:0019637,GO:0019693,GO:0019720,GO:0019954,GO:0030447,GO:0032324,GO:0032446,GO:0032447,GO:0032505,GO:0032991,GO:0033554,GO:0034227,GO:0034470,GO:0034599,GO:0034641,GO:0034660,GO:0036211,GO:0036267,GO:0040007,GO:0040008,GO:0042221,GO:0042278,GO:0042292,GO:0043170,GO:0043412,GO:0043545,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051186,GO:0051188,GO:0051189,GO:0051301,GO:0051716,GO:0055086,GO:0065007,GO:0070566,GO:0070647,GO:0070733,GO:0070783,GO:0070784,GO:0070887,GO:0071566,GO:0071704,GO:0072521,GO:0090304,GO:0090407,GO:1900428,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:2000220
EggNOG free text desc.thiosulfate sulfurtransferase activity
EggNOG OGsCOG0476@1,KOG2017@2759
EC2.7.7.80,2.8.1.11
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size411
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.7218575-CDS-H-elongata_contig77946:854..11441622931184.7218575-CDS-H-elongata_contig77946:854..1144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77946 855..1144 +
1691679732.7331746-CDS-H-elongata_contig77946:854..11441691679732.7331746-CDS-H-elongata_contig77946:854..1144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77946 855..1144 +
1622931184.7594304-CDS-H-elongata_contig77946:2566..26871622931184.7594304-CDS-H-elongata_contig77946:2566..2687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77946 2567..2687 +
1691679732.7468803-CDS-H-elongata_contig77946:2566..26871691679732.7468803-CDS-H-elongata_contig77946:2566..2687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77946 2567..2687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77946.15467.1prot_H-elongata_contig77946.15467.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77946 855..2687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77946.15467.1

>prot_H-elongata_contig77946.15467.1 ID=prot_H-elongata_contig77946.15467.1|Name=mRNA_H-elongata_contig77946.15467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MLQLEKENEALRRRVADLEREKIATLSTLPRNGGVTAIGNSAPHPAVETS
TATGRACYGTCQELSRESLGKAGMTAAEIARYSRHLLVPAVGVEGQRNLL
GKTCLVIGAGGLASAVLPYLAGAGVGHLKVIDFDTV*
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mRNA from alignment at H-elongata_contig77946:855..2687+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77946.15467.1 ID=mRNA_H-elongata_contig77946.15467.1|Name=mRNA_H-elongata_contig77946.15467.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1833bp|location=Sequence derived from alignment at H-elongata_contig77946:855..2687+ (Himanthalia elongata Himel1 dioecious)
ATGCTCCAGCTCGAAAAGGAAAACGAGGCTCTGCGCCGGCGGGTAGCCGA
CCTCGAGAGGGAAAAAATCGCGACTCTCTCGACACTGCCGAGGAACGGAG
GGGTCACCGCCATCGGAAACTCCGCTCCGCATCCCGCCGTCGAGACTAGT
ACTGCCACGGGCAGAGCCTGCTACGGAACCTGCCAAGAACTTTCCCGTGA
ATCGCTGGGAAAGGCAGGAATGACCGCGGCAGAAATCGCGAGGTACTCCC
GGCATCTGCTGGTGCCCGCGGTTGGGGTCGAGGGTCAACGGTACGTTGAA
GCGTTAATACAATAACATACGCGCGCGCGCACGCAAAAAAAAACCGCACA
AAAATGCGTTCTGCGGTGTGTTGTCTTTTTGTATCCTCTCTTTTGGGTGC
TTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTACATTTTTTATTCACGA
GCACCGGTAAAGCGCGCCGCTTCGCGCGATACAGGCACGAATATCTCGAT
CTATTTGTTTTTTTTTGCATTCGTGTCTTGTTAGTTCCCAAGACTCTTCG
AAACCTTTCTTGCGGGTTCGCTAACTGTACGAAGAGGGAGGAGCTTCGCA
TCGCGCGATGTGCGTACGTGTTGTGAATGTGGAAACGGCAGACGGTGATA
GATCACGTTTATGAATTTTAATGTTAAATGCTCAATGGACTGTCGGACGG
TACCTAGATCAATTGAAACATACTAACGAGCGCGCGTGTGTGTGTCTTCA
TTTATTTAATTGCATACAACCGTTAAGGCAATCCGGTCCTGTGATTCTAC
ACTATTCATACTATACTATACTATACTATACTAATCATCCTATACTATTC
ATACTATACTATTCATACTATACTATACTGTACGATACTATTCATACTAT
ACTATTCATACTATACTATACTGTACTATACTATTCATACTATACTATTC
ATACTATACTATACTGTACTATACTATTCATACTATACTATACTGTACTA
TACTATATTATACTATACTATACTATACTGCATGTAACCCACCTGGAGGT
TACTTTTTTGTGGCTCAAAAGTGTTTAGGCATGGGAGAGCCTCCGGCGAG
ACTCTCAGGTTTCAGGCATACAGACTCAGATCGCTCGCAGCACTATTTCT
CTCTCAAAATGTTACGGCTCGAGAGACATAACGCAGACGCCAGGCTCCCA
ACGGGAAACCCCAACTTTGGCCGGCGGTTACACATTTTTGTTTTTTTCGA
CTAATGCCGTGAAGAAAATTAAAACTTTGCTCTGTATAATAGCGCTAGTC
TAGAGCTGGAGCATTCTTATTTAAAAAAAAAGAAAAGAAAAAGAGCAAGA
GCGTCGTAGAGTAAGGTAGCCTCTGGCTCAGTAGTATTTATTATGTCGGG
GAAAGCCTTCCATTATGATGATGCTGTGGTGCTGGGCGTTTATGACGTCG
TGCCCGGCGACCCGGCCACGTGTTTATTTTTCATTTTTTGTATATCTAAG
TACTGCATGTGCACACATTCTCGACCTCCTTCTATTACTGGTGTTTTTTG
TTTTGTTTTTTTCTGGGGGGTATCCGGGGGGGTTTTCCGGCCTTGTTTTA
TGTTCTGCTCTTTTTTTTTGTCTCTCATTTTTATTTATTTTTTCGGCTTT
TTGTTTTCGCCTCGTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
ATCTGCATTTAGAAATTTGCTGGGAAAAACCTGCCTGGTGATCGGCGCGG
GTGGGTTGGCGTCCGCCGTCTTGCCCTATCTTGCCGGTGCCGGTGTGGGA
CACCTCAAGGTCATCGACTTCGACACGGTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig77946:855..2687+

>mRNA_H-elongata_contig77946.15467.1 ID=mRNA_H-elongata_contig77946.15467.1|Name=mRNA_H-elongata_contig77946.15467.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig77946:855..2687+ (Himanthalia elongata Himel1 dioecious)
ATGCTCCAGCTCGAAAAGGAAAACGAGGCTCTGCGCCGGCGGGTAGCCGA
CCTCGAGAGGGAAAAAATCGCGACTCTCTCGACACTGCCGAGGAACGGAG
GGGTCACCGCCATCGGAAACTCCGCTCCGCATCCCGCCGTCGAGACTAGT
ACTGCCACGGGCAGAGCCTGCTACGGAACCTGCCAAGAACTTTCCCGTGA
ATCGCTGGGAAAGGCAGGAATGACCGCGGCAGAAATCGCGAGGTACTCCC
GGCATCTGCTGGTGCCCGCGGTTGGGGTCGAGGGTCAACGATGCTCCAGC
TCGAAAAGGAAAACGAGGCTCTGCGCCGGCGGGTAGCCGACCTCGAGAGG
GAAAAAATCGCGACTCTCTCGACACTGCCGAGGAACGGAGGGGTCACCGC
CATCGGAAACTCCGCTCCGCATCCCGCCGTCGAGACTAGTACTGCCACGG
GCAGAGCCTGCTACGGAACCTGCCAAGAACTTTCCCGTGAATCGCTGGGA
AAGGCAGGAATGACCGCGGCAGAAATCGCGAGGTACTCCCGGCATCTGCT
GGTGCCCGCGGTTGGGGTCGAGGGTCAACGAAATTTGCTGGGAAAAACCT
GCCTGGTGATCGGCGCGGGTGGGTTGGCGTCCGCCGTCTTGCCCTATCTT
GCCGGTGCCGGTGTGGGACACCTCAAGGTCATCGACTTCGACACGGTATA
AAAATTTGCTGGGAAAAACCTGCCTGGTGATCGGCGCGGGTGGGTTGGCG
TCCGCCGTCTTGCCCTATCTTGCCGGTGCCGGTGTGGGACACCTCAAGGT
CATCGACTTCGACACGGTATAA
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