mRNA_H-elongata_contig77877.15461.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77877.15461.1
Unique NamemRNA_H-elongata_contig77877.15461.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig77877.15461.1 vs. uniprot
Match: A0A3Q0QQV4_AMPCI (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Heroini TaxID=318529 RepID=A0A3Q0QQV4_AMPCI)

HSP 1 Score: 67.4 bits (163), Expect = 1.920e-9
Identity = 56/159 (35.22%), Postives = 72/159 (45.28%), Query Frame = 3
Query:  222 SGIMLVCDNFFTSPILFLCLVACGVYAVGTLRSNLRGAAEAKTWLRENNEEVNN-SGFRKRSQMVFARMGDIAFTLWKDSRDVFFASTIHIYEKHFKGIKYTRRQGKGKKEKQFEGHQ-------PPCRKEYSMKMGGTDKGDQYNSLYAFHHKAY-WY 671
            +G  L  DNF+TSP LF  L    + A GT+R N  G    KT       ++N       R  + + R   + F  W+D+RDVFF STIH       G +  +R+ K K     EGH        PP  K+Y+  MGG D  DQ    Y   HK   WY
Sbjct:  305 TGYKLYLDNFYTSPTLFRDLYQQRIRACGTMRIN--GVGYPKT-------KINALDSIALRGSIRWLREDPLLFVQWRDTRDVFFCSTIHTAH----GTETVKRKIKDK-----EGHWSSKDIPIPPAVKDYNQHMGGVDLSDQLTGYYDVLHKTKKWY 445          
BLAST of mRNA_H-elongata_contig77877.15461.1 vs. uniprot
Match: A0A3B4TFC7_SERDU (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Seriola TaxID=8160 RepID=A0A3B4TFC7_SERDU)

HSP 1 Score: 65.5 bits (158), Expect = 9.140e-9
Identity = 56/174 (32.18%), Postives = 79/174 (45.40%), Query Frame = 3
Query:  183 FDACVAFGAH-LKDSGIMLVCDNFFTSPILFLCLVACGVYAVGTLRSNLRGAAEAKTWLRENNEEVNNSGFRKRSQMVFARMGDIAFTLWKDSRDVFFASTIH------IYEKHFKGIKYTRRQGKGKKEKQFEGHQPPCRK---EYSMKMGGTDKGDQYNSLYAFHHKAY-WY 671
            +D  + F +     SG  L CDN++TSP LF+ L +  V A GT R N R   E++T  +++           R  + + R G + F  W DS+ V   STIH      I ++H KG           K+ Q++    P      EY+  MGG D  DQ    Y+ HHK   WY
Sbjct:  365 YDTVIGFMSQKYLGSGYHLYCDNYYTSPKLFMELCSLKVCACGTYRDNRR---ESRTKKKDS-----------RGTIRWMRNGPLLFVKWMDSKQVSICSTIHTVYSGEIAKRHVKG-----------KDGQWKIQNIPMPTPVAEYNKYMGGVDLSDQLIQYYSVHHKTMSWY 513          
BLAST of mRNA_H-elongata_contig77877.15461.1 vs. uniprot
Match: A0A6P8I652_ACTTE (piggyBac transposable element-derived protein 4-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I652_ACTTE)

HSP 1 Score: 62.8 bits (151), Expect = 5.270e-8
Identity = 49/152 (32.24%), Postives = 67/152 (44.08%), Query Frame = 3
Query:  207 AHLKDSGIMLVCDNFFTSPILFLCLVACGVYAVGTLRSNLRGAAEAKTWLRENNEEVNNSGFRKRSQMVFARMGDIAFTLWKDSRDVFFASTIHIYEKHFKGIKYTRRQGKGKKEKQFEGHQPPCRKEYSMKMGGTDKGDQYNSLYAFHHKA 662
            + L+D GI++  DNFFT   L   L     Y VGTLR+N +G  EA        +  N     KR        G+I   +WKD++ V F S +H    +      T  Q K KK  +     PP    Y++ MG  D+ DQ    YA   K+
Sbjct:   64 SELRDQGIIVCIDNFFTGFPLMKELRQWSTYVVGTLRTNRKGYPEAL-------KNANLLKGMKRGDYHTVACGEIVCAVWKDTKHVTFVSNVHSSSGN------TTIQRKLKKGGKLSLPCPPSAVSYNVNMGAVDRHDQMVQSYAIDRKS 202          
BLAST of mRNA_H-elongata_contig77877.15461.1 vs. uniprot
Match: A0A3B4TF50_SERDU (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Seriola dumerili TaxID=41447 RepID=A0A3B4TF50_SERDU)

HSP 1 Score: 62.8 bits (151), Expect = 7.090e-8
Identity = 52/160 (32.50%), Postives = 74/160 (46.25%), Query Frame = 3
Query:  222 SGIMLVCDNFFTSPILFLCLVACGVYAVGTLRSNLRGAAEAKTWLRENNEEVNNSGFRKRSQMVFARMGDIAFTLWKDSRDVFFASTIH------IYEKHFKGIKYTRRQGKGKKEKQFEGHQPPCRK---EYSMKMGGTDKGDQYNSLYAFHHKAY-WY 671
            SG  L CDN++TSP LF+ L +  V+A GT R N R   E++T  +++           R  + + R G + F  W D+  V   STIH      I ++H KG           K+ Q++    P      EY+  MGG D  DQ    ++ HHK   WY
Sbjct:  335 SGYHLYCDNYYTSPKLFMELCSLKVHACGTYRDNRR---ESRTKKKDS-----------RGTIRWMRNGPLLFVKWMDTTQVSMCSTIHTVYSGEIAKRHVKG-----------KDGQWKIQNIPMPTPVAEYNKYMGGVDLSDQLIQYFSVHHKTMRWY 469          
BLAST of mRNA_H-elongata_contig77877.15461.1 vs. uniprot
Match: A0A3Q1B481_AMPOC (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Amphiprion ocellaris TaxID=80972 RepID=A0A3Q1B481_AMPOC)

HSP 1 Score: 58.5 bits (140), Expect = 1.930e-6
Identity = 53/165 (32.12%), Postives = 68/165 (41.21%), Query Frame = 3
Query:  183 FDACVAF-GAHLKDSGIMLVCDNFFTSPILFLCLVACGVYAVGTLRSNLRGAAEAKTWLRENNEEVNNSGFRKRSQMVFARMGDIAFTLWKDSRDVFFASTIHIYEKHFKGIKYTRRQGKGKKEKQFEGHQPPCRKEYSMKMGGTDKGDQYNSLYAFHHKAY-WY 671
            FDA ++        SG  + CDNF+TSP LFL L   G  A GT R    G  + K         +N               G + F  W D+R+V   ST+H     F G    R    G+K    E   P   K+Y+  MGG D  DQ N  Y+   K+  WY
Sbjct:  296 FDAVMSLINKSYLGSGYHIYCDNFYTSPALFLHLHHLGFGACGTYRDARIGIPKTK---------IN---------------GPLLFIKWMDTREVSVCSTLHTA---FSGDTVKRMCKVGRKYAAVEVPVPAAVKDYNSYMGGVDLSDQLNGSYSSWRKSRKWY 433          
BLAST of mRNA_H-elongata_contig77877.15461.1 vs. uniprot
Match: A0A671S3K9_9TELE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671S3K9_9TELE)

HSP 1 Score: 55.8 bits (133), Expect = 1.580e-5
Identity = 52/158 (32.91%), Postives = 71/158 (44.94%), Query Frame = 3
Query:  213 LKDSGIMLVCDNFFTSPILFLCLVACGVYAVGTLRSNLRGAAEAKTWLRENNEEVNNSGFR-KRSQMVFARMGDIAFTLWKDSRDVFFASTIHIYEKHFKGIKYTRRQGKGKKEKQFEGHQ---PPCRKEYSMKMGGTDKGDQYNSLYAFHHKAY-WY 671
            L   G  L  DNF+TSP LF+ L+A    A GT+R+N RG    K          N+   R +R  + + R G + F  W D+R+V   ST+H   K + G    RR      E ++E  +   P   K+Y+  MG  D  D     Y   HK   WY
Sbjct:  329 LLGKGYQLFIDNFYTSPCLFMDLLAKKTLACGTIRTNRRGFPRTK---------ANDLSRRDQRGTIRWLRDGKLLFVKWMDTREVTVCSTMH---KAYDGDAVLRRVKNP--EGEWERRRIPIPAAVKDYNKYMGVVDLSDALIGYYNVLHKTTKWY 472          
BLAST of mRNA_H-elongata_contig77877.15461.1 vs. uniprot
Match: A0A3B4Z974_9TELE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4Z974_9TELE)

HSP 1 Score: 53.5 bits (127), Expect = 9.250e-5
Identity = 52/173 (30.06%), Postives = 77/173 (44.51%), Query Frame = 3
Query:  183 FDACVAF-GAHLKDSGIMLVCDNFFTSPI-LFLCLVACGVYAVGTLRSNLRGAAEAKTWLRENNEEVNNSGFRKRSQMVFARMGDIAFTLWKDSRDVFFASTIHIYEKHFKGIKYTRRQGKGKKEKQFEGHQ-------PPCRKEYSMKMGGTDKGDQYNSLY-AFHHKAYWY 671
            +D+ ++     L D+G  L  DNF+ SP  LF  L    + A GT+R+N +G    +T +   + +        R  + + R   +    WKD RDVF  ST+H+   H K       Q   ++ K   GH        PP  K+Y+ +MGG D  D     Y A H +  WY
Sbjct:  300 YDSVISLLNTDLLDTGYKLYVDNFYASPAGLFWDLRQKNISACGTIRTNRQGYP--RTTINALDPKS------PRGSIRWIRENPLLSVQWKDMRDVFLCSTMHMA--HGK-------QTVQRRVKDDAGHWSMKDVPIPPAIKDYNRQMGGVDLSDALIGYYEAVHKRKKWY 455          
BLAST of mRNA_H-elongata_contig77877.15461.1 vs. uniprot
Match: A0A3N0Y7T0_ANAGA (PiggyBac transposable element-derived protein 4 n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0Y7T0_ANAGA)

HSP 1 Score: 52.8 bits (125), Expect = 9.470e-5
Identity = 34/93 (36.56%), Postives = 48/93 (51.61%), Query Frame = 3
Query:  213 LKDSGIMLVCDNFFTSPILFLCLVACGVYAVGTLRSNLRGAAEAKTWLRENNEEVNNSGFRK-RSQMVFARMGDIAFTLWKDSRDVFFASTIH 488
            L   G  L  DNF+TSP LF+ L+A    A GT+R+N +G  + K          N+   R  R  + + R G + F  WKD+R+V   ST+H
Sbjct:    8 LLGGGCQLFMDNFYTSPCLFMDLLAKKTLACGTVRTNRQGFPKMK---------ANDLSRRDPRGTIRWLRDGKLLFLKWKDTREVTMCSTMH 91          
BLAST of mRNA_H-elongata_contig77877.15461.1 vs. uniprot
Match: UPI001C5A166E (piggyBac transposable element-derived protein 4-like n=1 Tax=Cyprinus carpio TaxID=7962 RepID=UPI001C5A166E)

HSP 1 Score: 53.5 bits (127), Expect = 9.850e-5
Identity = 51/158 (32.28%), Postives = 71/158 (44.94%), Query Frame = 3
Query:  213 LKDSGIMLVCDNFFTSPILFLCLVACGVYAVGTLRSNLRGAAEAKTWLRENNEEVNNSGFRK-RSQMVFARMGDIAFTLWKDSRDVFFASTIHIYEKHFKGIKYTRRQGKGKKEKQFEGHQ---PPCRKEYSMKMGGTDKGDQYNSLYAFHHKAY-WY 671
            L   G  L  DNF+TSP LF+ L+A    A GT+R+N +G  + K          N+   R  R  + + R G + F  W D+R+V   ST+H   K + G    RR      +  +E  +   P   K+Y+  MGG D  D     Y   HK   WY
Sbjct:  372 LLGGGYQLFMDNFYTSPCLFMDLLAKKTLACGTVRTNRQGFPKMK---------ANDLSRRDPRGTIRWLRDGKLLFLKWMDTREVTMCSTMH---KAYGGETVLRRVKNP--DGSWEMRKIPIPVAVKDYNKYMGGVDLSDALIGYYNVLHKTTKWY 515          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77877.15461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A3Q0QQV4_AMPCI1.920e-935.22DDE_Tnp_1_7 domain-containing protein n=3 Tax=Hero... [more]
A0A3B4TFC7_SERDU9.140e-932.18DDE_Tnp_1_7 domain-containing protein n=3 Tax=Seri... [more]
A0A6P8I652_ACTTE5.270e-832.24piggyBac transposable element-derived protein 4-li... [more]
A0A3B4TF50_SERDU7.090e-832.50DDE_Tnp_1_7 domain-containing protein n=1 Tax=Seri... [more]
A0A3Q1B481_AMPOC1.930e-632.12DDE_Tnp_1_7 domain-containing protein n=1 Tax=Amph... [more]
A0A671S3K9_9TELE1.580e-532.91DDE_Tnp_1_7 domain-containing protein n=1 Tax=Sino... [more]
A0A3B4Z974_9TELE9.250e-530.06DDE_Tnp_1_7 domain-containing protein n=1 Tax=Steg... [more]
A0A3N0Y7T0_ANAGA9.470e-536.56PiggyBac transposable element-derived protein 4 n=... [more]
UPI001C5A166E9.850e-532.28piggyBac transposable element-derived protein 4-li... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77877contigH-elongata_contig77877:345..1589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score66.2
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog48698.ENSPFOP00000003239
EggNOG free text desc.Transposase IS4
EggNOG OGs28PUT@1,2QWHD@2759,38EA4@33154,3BMU4@33208,3CZSB@33213,48FQU@7711,49C6U@7742
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size671
Cds size516
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77877.15461.1prot_H-elongata_contig77877.15461.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77877 345..1143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931183.9702892-CDS-H-elongata_contig77877:344..4921622931183.9702892-CDS-H-elongata_contig77877:344..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77877 345..492 -
1691679732.4518988-CDS-H-elongata_contig77877:344..4921691679732.4518988-CDS-H-elongata_contig77877:344..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77877 345..492 -
1622931184.006644-CDS-H-elongata_contig77877:775..11431622931184.006644-CDS-H-elongata_contig77877:775..1143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77877 776..1143 -
1691679732.4668283-CDS-H-elongata_contig77877:775..11431691679732.4668283-CDS-H-elongata_contig77877:775..1143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77877 776..1143 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931184.0247478-UTR-H-elongata_contig77877:1143..12581622931184.0247478-UTR-H-elongata_contig77877:1143..1258Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77877 1144..1258 -
1691679732.4768639-UTR-H-elongata_contig77877:1143..12581691679732.4768639-UTR-H-elongata_contig77877:1143..1258Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77877 1144..1258 -
1622931184.0395832-UTR-H-elongata_contig77877:1549..15891622931184.0395832-UTR-H-elongata_contig77877:1549..1589Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77877 1550..1589 -
1691679732.4859414-UTR-H-elongata_contig77877:1549..15891691679732.4859414-UTR-H-elongata_contig77877:1549..1589Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77877 1550..1589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77877.15461.1

>prot_H-elongata_contig77877.15461.1 ID=prot_H-elongata_contig77877.15461.1|Name=mRNA_H-elongata_contig77877.15461.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
MCCIVIFVLFDACVAFGAHLKDSGIMLVCDNFFTSPILFLCLVACGVYAV
GTLRSNLRGAAEAKTWLRENNEEVNNSGFRKRSQMVFARMGDIAFTLWKD
SRDVFFASTIHIYEKHFKGIKYTRRQGKGKKEKQFEGHQPPCRKEYSMKM
GGTDKGDQYNSLYAFHHKAYWY
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mRNA from alignment at H-elongata_contig77877:345..1589-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77877.15461.1 ID=mRNA_H-elongata_contig77877.15461.1|Name=mRNA_H-elongata_contig77877.15461.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1245bp|location=Sequence derived from alignment at H-elongata_contig77877:345..1589- (Himanthalia elongata Himel1 dioecious)
GTTATACGGCGCTACCTGCCAAACAAACCCATAAAATGTGGTGAGTCTGG GAGGGAGGAGTTTCTCGGCATGGGGGACTGCGGGTAAGTTTGAAACCCTC ATCTTTCATACAAAAATCTGTTTTTTTTATTACACAGCGTACACGCAAAA ACAAAACTCCACTTGCATAGTCGTATGTAGCTGATGCGATAAACGTCATT TTCTAGTATCTTCAAGTAAGACTGCGCATGGAACGATATATTATTTTATC TGCTTGCATTCCGTAAAATTGTATCCTTGTTGTATGTATGCTAATAACCT TTGCGCCAACATGATTTTCTTATCTCAACAGGTATCAAAATCTGGACTGC CTGCTGTTGGACGGGTTACTGCTTTGTTGGGTACACTGACGGTGGCTTTG ATCGAGATCCTCGCCTCAAGCCCTTCGCCAAAAACCCCTGGGGCGAATGT GTTGCATTGTTATCTTCGTTTTGTTTGACGCTTGTGTGGCGTTTGGCGCC CACTTGAAGGATTCCGGCATCATGCTTGTGTGTGACAATTTCTTTACTTC CCCTATCCTCTTCTTGTGCCTGGTGGCTTGTGGCGTCTACGCCGTGGGTA CACTTCGATCCAACCTCCGTGGCGCGGCGGAAGCAAAGACTTGGCTACGT GAGAATAACGAAGAAGTCAATAACAGTGGGTTTCGAAAAAGGAGCCAGAT GGTCTTCGCGAGGATGGGCGATATTGCATTTACATTGTGGAAAGACTCAC GAGATGTTTTTTTTGCCTCCACGATCCACATCTACGAGAAACACTTCAAG GGGATAAAGTACACGTGAGAAGCTTGAGCGACCCCTGAGGGAATTTCAGC GTATGCTCTTGGCAGGCACCGAAACATATGTTTGTTTTCCTTTATATAGA ATTTAATTAGAACGGTTTGTATTGCAGATTTGTGTGTGTCTTTGTATAGG CCTGAGTTTATCGATGTTATAATTTACGCACTTATGCCCAAGAGATGGCA ATGTTTTCAATGTCTATATCACAAAACGAATTTAGGAACCAAACTTATGC CGATCGCTGATCTAAGCTTCCCATGGATGCCCCACAATCTTGCGCAGTCG CCGTCAGGGTAAGGGAAAAAAAGAAAAACAATTTGAAGGACACCAGCCAC CCTGTCGGAAGGAGTACTCGATGAAAATGGGCGGCACCGACAAGGGAGAC CAGTACAATAGTTTATATGCATTCCATCATAAGGCGTACTGGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig77877:345..1589-

>mRNA_H-elongata_contig77877.15461.1 ID=mRNA_H-elongata_contig77877.15461.1|Name=mRNA_H-elongata_contig77877.15461.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig77877:345..1589- (Himanthalia elongata Himel1 dioecious)
ATGTGTTGCATTGTTATCTTCGTTTTGTTTGACGCTTGTGTGGCGTTTGG
CGCCCACTTGAAGGATTCCGGCATCATGCTTGTGTGTGACAATTTCTTTA
CTTCCCCTATCCTCTTCTTGTGCCTGGTGGCTTGTGGCGTCTACGCCGTG
GGTACACTTCGATCCAACCTCCGTGGCGCGGCGGAAGCAAAGACTTGGCT
ACGTGAGAATAACGAAGAAGTCAATAACAGTGGGTTTCGAAAAAGGAGCC
AGATGGTCTTCGCGAGGATGGGCGATATTGCATTTACATTGTGGAAAGAC
TCACGAGATGTTTTTTTTGCCTCCACGATCCACATCTACGAGAAACACTT
CAAGGGGATAAAGTACACATGTGTTGCATTGTTATCTTCGTTTTGTTTGA
CGCTTGTGTGGCGTTTGGCGCCCACTTGAAGGATTCCGGCATCATGCTTG
TGTGTGACAATTTCTTTACTTCCCCTATCCTCTTCTTGTGCCTGGTGGCT
TGTGGCGTCTACGCCGTGGGTACACTTCGATCCAACCTCCGTGGCGCGGC
GGAAGCAAAGACTTGGCTACGTGAGAATAACGAAGAAGTCAATAACAGTG
GGTTTCGAAAAAGGAGCCAGATGGTCTTCGCGAGGATGGGCGATATTGCA
TTTACATTGTGGAAAGACTCACGAGATGTTTTTTTTGCCTCCACGATCCA
CATCTACGAGAAACACTTCAAGGGGATAAAGTACACTCGCCGTCAGGGTA
AGGGAAAAAAAGAAAAACAATTTGAAGGACACCAGCCACCCTGTCGGAAG
GAGTACTCGATGAAAATGGGCGGCACCGACAAGGGAGACCAGTACAATAG
TTTATATGCATTCCATCATAAGGCGTACTGGTACTCGCCGTCAGGGTAAG
GGAAAAAAAGAAAAACAATTTGAAGGACACCAGCCACCCTGTCGGAAGGA
GTACTCGATGAAAATGGGCGGCACCGACAAGGGAGACCAGTACAATAGTT
TATATGCATTCCATCATAAGGCGTACTGGTAC
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