mRNA_H-elongata_contig77874.15460.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77874.15460.1
Unique NamemRNA_H-elongata_contig77874.15460.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77874.15460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77874contigH-elongata_contig77874:262..1129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size868
Cds size867
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931183.9140058-CDS-H-elongata_contig77874:261..11281622931183.9140058-CDS-H-elongata_contig77874:261..1128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77874 262..1128 +
1691679732.4360085-CDS-H-elongata_contig77874:261..11281691679732.4360085-CDS-H-elongata_contig77874:261..1128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77874 262..1128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77874.15460.1prot_H-elongata_contig77874.15460.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77874 262..1128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77874.15460.1

>prot_H-elongata_contig77874.15460.1 ID=prot_H-elongata_contig77874.15460.1|Name=mRNA_H-elongata_contig77874.15460.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=289bp
RVLEIPSIAEVVHSAEPAAADASERASRRGRGDCADDPGVSEGGGYGKSG
PFPRCSSEPAPQHDDLDHQHRHHRLEQGHHHQHHQGIEGRRGSTGTIVKS
NNGDINSAEGDSAPKQALLPSSSSSKGSDRYRRKAKKARGSGDAGAETGG
MYEANTLATAAVGVDNRKFRSHSSPGAVGDDDHNVTGNQVHGEAGTVDGF
PAMSPQKYRHRSQEQPQQHPPPPYVPQTLGDLLSSPSQPLTLLPPSFPVA
TATTIPAASFGITQPPPPYDPDARWDSWEREWDREEDEE
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mRNA from alignment at H-elongata_contig77874:262..1129+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77874.15460.1 ID=mRNA_H-elongata_contig77874.15460.1|Name=mRNA_H-elongata_contig77874.15460.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=868bp|location=Sequence derived from alignment at H-elongata_contig77874:262..1129+ (Himanthalia elongata Himel1 dioecious)
AGGGTGTTGGAGATCCCTTCCATCGCGGAGGTGGTGCACTCCGCCGAGCC
CGCGGCGGCCGACGCTTCCGAAAGAGCTTCGCGACGAGGAAGAGGCGATT
GTGCTGACGACCCCGGTGTGAGTGAGGGCGGAGGCTACGGCAAAAGCGGG
CCATTTCCTCGTTGTTCATCGGAGCCAGCCCCACAGCACGATGATCTTGA
TCATCAACACCGTCATCATCGTCTTGAGCAGGGGCATCATCACCAGCACC
ATCAGGGAATTGAGGGGCGCCGGGGAAGCACGGGCACCATTGTGAAGAGC
AACAACGGCGACATCAACAGCGCGGAGGGAGATTCGGCGCCCAAGCAGGC
GTTATTGCCTTCATCTTCGTCGTCGAAAGGCTCGGACCGCTACCGTCGCA
AGGCGAAGAAGGCGCGTGGTTCCGGTGATGCCGGAGCTGAGACTGGGGGT
ATGTATGAAGCTAACACCCTTGCTACTGCAGCCGTAGGCGTTGACAACAG
GAAGTTCCGCTCCCACTCGTCCCCAGGTGCTGTTGGCGATGATGATCACA
ATGTTACAGGAAACCAGGTTCACGGCGAGGCTGGCACGGTCGACGGTTTT
CCGGCGATGTCTCCTCAAAAATATCGGCACCGGTCTCAGGAGCAGCCGCA
GCAGCATCCGCCGCCCCCGTACGTGCCGCAGACATTGGGAGACCTGCTTT
CCTCGCCTTCTCAGCCGTTGACTCTGCTTCCTCCGTCGTTCCCTGTCGCC
ACCGCCACCACCATCCCCGCCGCATCTTTCGGAATCACCCAGCCTCCGCC
TCCGTACGATCCCGATGCCCGGTGGGACTCTTGGGAGAGGGAGTGGGATA
GGGAGGAAGACGAGGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig77874:262..1129+

>mRNA_H-elongata_contig77874.15460.1 ID=mRNA_H-elongata_contig77874.15460.1|Name=mRNA_H-elongata_contig77874.15460.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1734bp|location=Sequence derived from alignment at H-elongata_contig77874:262..1129+ (Himanthalia elongata Himel1 dioecious)
AGGGTGTTGGAGATCCCTTCCATCGCGGAGGTGGTGCACTCCGCCGAGCC
CGCGGCGGCCGACGCTTCCGAAAGAGCTTCGCGACGAGGAAGAGGCGATT
GTGCTGACGACCCCGGTGTGAGTGAGGGCGGAGGCTACGGCAAAAGCGGG
CCATTTCCTCGTTGTTCATCGGAGCCAGCCCCACAGCACGATGATCTTGA
TCATCAACACCGTCATCATCGTCTTGAGCAGGGGCATCATCACCAGCACC
ATCAGGGAATTGAGGGGCGCCGGGGAAGCACGGGCACCATTGTGAAGAGC
AACAACGGCGACATCAACAGCGCGGAGGGAGATTCGGCGCCCAAGCAGGC
GTTATTGCCTTCATCTTCGTCGTCGAAAGGCTCGGACCGCTACCGTCGCA
AGGCGAAGAAGGCGCGTGGTTCCGGTGATGCCGGAGCTGAGACTGGGGGT
ATGTATGAAGCTAACACCCTTGCTACTGCAGCCGTAGGCGTTGACAACAG
GAAGTTCCGCTCCCACTCGTCCCCAGGTGCTGTTGGCGATGATGATCACA
ATGTTACAGGAAACCAGGTTCACGGCGAGGCTGGCACGGTCGACGGTTTT
CCGGCGATGTCTCCTCAAAAATATCGGCACCGGTCTCAGGAGCAGCCGCA
GCAGCATCCGCCGCCCCCGTACGTGCCGCAGACATTGGGAGACCTGCTTT
CCTCGCCTTCTCAGCCGTTGACTCTGCTTCCTCCGTCGTTCCCTGTCGCC
ACCGCCACCACCATCCCCGCCGCATCTTTCGGAATCACCCAGCCTCCGCC
TCCGTACGATCCCGATGCCCGGTGGGACTCTTGGGAGAGGGAGTGGGATA
GGGAGGAAGACGAGGAGAGGGTGTTGGAGATCCCTTCCATCGCGGAGGTG
GTGCACTCCGCCGAGCCCGCGGCGGCCGACGCTTCCGAAAGAGCTTCGCG
ACGAGGAAGAGGCGATTGTGCTGACGACCCCGGTGTGAGTGAGGGCGGAG
GCTACGGCAAAAGCGGGCCATTTCCTCGTTGTTCATCGGAGCCAGCCCCA
CAGCACGATGATCTTGATCATCAACACCGTCATCATCGTCTTGAGCAGGG
GCATCATCACCAGCACCATCAGGGAATTGAGGGGCGCCGGGGAAGCACGG
GCACCATTGTGAAGAGCAACAACGGCGACATCAACAGCGCGGAGGGAGAT
TCGGCGCCCAAGCAGGCGTTATTGCCTTCATCTTCGTCGTCGAAAGGCTC
GGACCGCTACCGTCGCAAGGCGAAGAAGGCGCGTGGTTCCGGTGATGCCG
GAGCTGAGACTGGGGGTATGTATGAAGCTAACACCCTTGCTACTGCAGCC
GTAGGCGTTGACAACAGGAAGTTCCGCTCCCACTCGTCCCCAGGTGCTGT
TGGCGATGATGATCACAATGTTACAGGAAACCAGGTTCACGGCGAGGCTG
GCACGGTCGACGGTTTTCCGGCGATGTCTCCTCAAAAATATCGGCACCGG
TCTCAGGAGCAGCCGCAGCAGCATCCGCCGCCCCCGTACGTGCCGCAGAC
ATTGGGAGACCTGCTTTCCTCGCCTTCTCAGCCGTTGACTCTGCTTCCTC
CGTCGTTCCCTGTCGCCACCGCCACCACCATCCCCGCCGCATCTTTCGGA
ATCACCCAGCCTCCGCCTCCGTACGATCCCGATGCCCGGTGGGACTCTTG
GGAGAGGGAGTGGGATAGGGAGGAAGACGAGGAG
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