mRNA_H-elongata_contig77407.15417.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77407.15417.1
Unique NamemRNA_H-elongata_contig77407.15417.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig77407.15417.1 vs. uniprot
Match: D8LGB2_ECTSI (Peroxisomal membrane protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB2_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 4.090e-68
Identity = 101/120 (84.17%), Postives = 108/120 (90.00%), Query Frame = 1 
Query:    1 DPMQRNATGSFGALFHGPSGHYFYGFLDSKLPGTKPMTVVSKVAIDQTIWNPIFGVMFFTYLGLAEGKSFSEIQKKIKNDLATAVMGSWSVWIPAHTINFKFVPTSQRLLYINTIQVRLN 360
            D M+    G+FGAL HGP+GHYFYG LD+KLPGTKPMTV SKVAIDQTIWNPIFGVMFFTYLGLAEGKS  +IQKKIKNDLATAVMGSW+VWIPAHTINFKFVPTSQRLLYINTIQ+  N
Sbjct:   46 DFMRTLRLGTFGALVHGPTGHYFYGMLDAKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQIGYN 165
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BLAST of mRNA_H-elongata_contig77407.15417.1 vs. uniprot
Match: A0A835Z5E2_9STRA (Peroxisomal membrane protein-related n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E2_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.030e-62
Identity = 93/120 (77.50%), Postives = 104/120 (86.67%), Query Frame = 1 
Query:    1 DPMQRNATGSFGALFHGPSGHYFYGFLDSKLPGTKPMTVVSKVAIDQTIWNPIFGVMFFTYLGLAEGKSFSEIQKKIKNDLATAVMGSWSVWIPAHTINFKFVPTSQRLLYINTIQVRLN 360
            D M+    GSFGAL HGP+GH+FYG LDSKLPGT PMTV +KVAIDQTIWNPIFG+MFF+YLGL EGKS  +I +KIK DLATAVMGSW+VWIPAHTINFKFVPTSQRLLYIN+IQ+  N
Sbjct:   46 DFMRTVRLGSFGALVHGPTGHWFYGMLDSKLPGTAPMTVATKVAIDQTIWNPIFGIMFFSYLGLTEGKSVDQIYQKIKADLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINSIQIGYN 165
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BLAST of mRNA_H-elongata_contig77407.15417.1 vs. uniprot
Match: A0A7S2RA66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RA66_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.540e-60
Identity = 89/120 (74.17%), Postives = 100/120 (83.33%), Query Frame = 1 
Query:    1 DPMQRNATGSFGALFHGPSGHYFYGFLDSKLPGTKPMTVVSKVAIDQTIWNPIFGVMFFTYLGLAEGKSFSEIQKKIKNDLATAVMGSWSVWIPAHTINFKFVPTSQRLLYINTIQVRLN 360
            D M+    GSFG L HG +GHYFYGFLDSKLPGTKP+TV SKV IDQ  WNP FG+MFFTYLGLAEGKSF++I KKIK DL TAVMGSW+VW+PAHTINF F+P SQRLLYIN+IQ+  N
Sbjct:   55 DVMRTVRLGSFGLLVHGTTGHYFYGFLDSKLPGTKPVTVASKVLIDQVFWNPCFGIMFFTYLGLAEGKSFADIMKKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQIGYN 174
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BLAST of mRNA_H-elongata_contig77407.15417.1 vs. uniprot
Match: A0A7S2LHQ9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LHQ9_9STRA)

HSP 1 Score: 191 bits (485), Expect = 5.870e-60
Identity = 88/120 (73.33%), Postives = 100/120 (83.33%), Query Frame = 1 
Query:    1 DPMQRNATGSFGALFHGPSGHYFYGFLDSKLPGTKPMTVVSKVAIDQTIWNPIFGVMFFTYLGLAEGKSFSEIQKKIKNDLATAVMGSWSVWIPAHTINFKFVPTSQRLLYINTIQVRLN 360
            DPM+    GSFG L HG +GHYFYGFLDSKLPGTKP TV SKV IDQTIWNPIFG+MFF YL L EGKSF + +KKI++DL TAVMGSW+VW+PAHTINF F+P SQRLLYIN+IQ+  N
Sbjct:   46 DPMRTIRLGSFGFLVHGTTGHYFYGFLDSKLPGTKPQTVASKVLIDQTIWNPIFGLMFFGYLNLVEGKSFDDYKKKIQSDLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQIGYN 165
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BLAST of mRNA_H-elongata_contig77407.15417.1 vs. uniprot
Match: B7G8P1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8P1_PHATC)

HSP 1 Score: 188 bits (478), Expect = 6.190e-59
Identity = 89/120 (74.17%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:    1 DPMQRNATGSFGALFHGPSGHYFYGFLDSKLPGTKPMTVVSKVAIDQTIWNPIFGVMFFTYLGLAEGKSFSEIQKKIKNDLATAVMGSWSVWIPAHTINFKFVPTSQRLLYINTIQVRLN 360
            DPM+    GSFG L HG +GHYFYGFLDSKLPGT PMTV SKVAIDQTIWNPIFG MFF YL L EGKS  +   KIK DL TAVMGSW+VW+PAHTINF FVP +QRLLYINTIQ+  N
Sbjct:   47 DPMRTFRMGSFGFLLHGTTGHYFYGFLDSKLPGTAPMTVASKVAIDQTIWNPIFGCMFFGYLNLMEGKSLDDYTTKIKTDLKTAVMGSWAVWVPAHTINFAFVPPAQRLLYINTIQIGYN 166
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BLAST of mRNA_H-elongata_contig77407.15417.1 vs. uniprot
Match: A0A7S1UMI8_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UMI8_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.400e-58
Identity = 86/118 (72.88%), Postives = 97/118 (82.20%), Query Frame = 1 
Query:    7 MQRNATGSFGALFHGPSGHYFYGFLDSKLPGTKPMTVVSKVAIDQTIWNPIFGVMFFTYLGLAEGKSFSEIQKKIKNDLATAVMGSWSVWIPAHTINFKFVPTSQRLLYINTIQVRLN 360
            M+    GSFG L HG +GHYFYGFLDSKLPGTKP+TV SKVAIDQ +WNPIFG+MFF YL   EGKSFS+   KIK+DL TAVMGSW+VW+PAHTINF F+P SQRLLYINTIQ+  N
Sbjct:    1 MRTLRLGSFGFLVHGTTGHYFYGFLDSKLPGTKPVTVASKVAIDQVLWNPIFGLMFFGYLNFVEGKSFSDYTAKIKSDLQTAVMGSWAVWVPAHTINFAFIPPSQRLLYINTIQIGYN 118
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BLAST of mRNA_H-elongata_contig77407.15417.1 vs. uniprot
Match: K0SKR3_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SKR3_THAOC)

HSP 1 Score: 187 bits (474), Expect = 1.710e-58
Identity = 86/120 (71.67%), Postives = 97/120 (80.83%), Query Frame = 1 
Query:    1 DPMQRNATGSFGALFHGPSGHYFYGFLDSKLPGTKPMTVVSKVAIDQTIWNPIFGVMFFTYLGLAEGKSFSEIQKKIKNDLATAVMGSWSVWIPAHTINFKFVPTSQRLLYINTIQVRLN 360
            DPM+    GSFG   HG +GHYFYGFLDSKLPGTKP TV +KV IDQT+WNPIFG+MFF YL + EGKSF E  KK+K DL TAVMGSW+VW+PAHTINF FVP SQRLLYIN+IQ+  N
Sbjct:   36 DPMRTLRLGSFGFFVHGTTGHYFYGFLDSKLPGTKPQTVATKVLIDQTMWNPIFGLMFFGYLNVCEGKSFEEYTKKVKADLKTAVMGSWAVWVPAHTINFAFVPPSQRLLYINSIQIGYN 155
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BLAST of mRNA_H-elongata_contig77407.15417.1 vs. uniprot
Match: A0A7S2V4A9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A9_9STRA)

HSP 1 Score: 186 bits (472), Expect = 4.900e-58
Identity = 88/120 (73.33%), Postives = 97/120 (80.83%), Query Frame = 1 
Query:    1 DPMQRNATGSFGALFHGPSGHYFYGFLDSKLPGTKPMTVVSKVAIDQTIWNPIFGVMFFTYLGLAEGKSFSEIQKKIKNDLATAVMGSWSVWIPAHTINFKFVPTSQRLLYINTIQVRLN 360
            D M+    GSFG LFHGPSGHYFYGFLDSK+ GT    V +KVAIDQ  WNPIFG +FFTYLGLAEGKS  EI  KIK+DL TAVMGSW+VW+PAH INFKFVP+SQRLLYINTIQ+  N
Sbjct:   46 DVMRTIRLGSFGLLFHGPSGHYFYGFLDSKIVGTSTQAVATKVAIDQLFWNPIFGTVFFTYLGLAEGKSGGEIVNKIKSDLKTAVMGSWTVWVPAHIINFKFVPSSQRLLYINTIQIGYN 165
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BLAST of mRNA_H-elongata_contig77407.15417.1 vs. uniprot
Match: A0A7R9Z9F5_9STRA (Hypothetical protein n=3 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9Z9F5_9STRA)

HSP 1 Score: 187 bits (474), Expect = 5.680e-58
Identity = 88/120 (73.33%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:    1 DPMQRNATGSFGALFHGPSGHYFYGFLDSKLPGTKPMTVVSKVAIDQTIWNPIFGVMFFTYLGLAEGKSFSEIQKKIKNDLATAVMGSWSVWIPAHTINFKFVPTSQRLLYINTIQVRLN 360
            D M+    GSFG L HG +GH+FYGFLDSKLPGTKP+TV +KVAIDQTIWNPIFG MFF YL L EGKSF + + KIK DL TAVMGSW+VW+PAHTINF FVP SQRLLYINTIQ+  N
Sbjct:   73 DVMRTIRLGSFGFLLHGTTGHFFYGFLDSKLPGTKPVTVATKVAIDQTIWNPIFGCMFFGYLNLMEGKSFEDYKNKIKADLKTAVMGSWAVWVPAHTINFAFVPPSQRLLYINTIQIGYN 192
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BLAST of mRNA_H-elongata_contig77407.15417.1 vs. uniprot
Match: A0A6U6CAW4_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6CAW4_9STRA)

HSP 1 Score: 186 bits (471), Expect = 8.680e-58
Identity = 87/120 (72.50%), Postives = 97/120 (80.83%), Query Frame = 1 
Query:    1 DPMQRNATGSFGALFHGPSGHYFYGFLDSKLPGTKPMTVVSKVAIDQTIWNPIFGVMFFTYLGLAEGKSFSEIQKKIKNDLATAVMGSWSVWIPAHTINFKFVPTSQRLLYINTIQVRLN 360
            D M+    GSFG L HG +GHYFYGFLDSK+PGTKP+TV +KVAIDQTIWNPIFG+MFF YL + EGKSF     KIK DL TAVMGSW+VW+PAHTINF FVP SQRLLYINTIQ+  N
Sbjct:   52 DVMRTIRLGSFGFLLHGTTGHYFYGFLDSKMPGTKPVTVATKVAIDQTIWNPIFGLMFFGYLNIMEGKSFETYTNKIKADLKTAVMGSWAVWVPAHTINFAFVPPSQRLLYINTIQIGYN 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77407.15417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGB2_ECTSI4.090e-6884.17Peroxisomal membrane protein-related n=1 Tax=Ectoc... [more]
A0A835Z5E2_9STRA2.030e-6277.50Peroxisomal membrane protein-related n=1 Tax=Tribo... [more]
A0A7S2RA66_9STRA1.540e-6074.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2LHQ9_9STRA5.870e-6073.33Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B7G8P1_PHATC6.190e-5974.17Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1UMI8_9STRA1.400e-5872.88Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
K0SKR3_THAOC1.710e-5871.67Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2V4A9_9STRA4.900e-5873.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9Z9F5_9STRA5.680e-5873.33Hypothetical protein n=3 Tax=Odontellaceae TaxID=2... [more]
A0A6U6CAW4_9STRA8.680e-5872.50Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77407contigH-elongata_contig77407:283..1485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.7
Seed ortholog evalue1.2e-53
Seed eggNOG ortholog2880.D8LGB2
KEGG koko:K13348
KEGG Pathwayko04146,map04146
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
Ec32 ortholog descriptionperoxisomal membrane protein-related
Ec32 orthologEc-06_002720.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77407.15417.1prot_H-elongata_contig77407.15417.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77407 289..1485 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.7426236-UTR-H-elongata_contig77407:282..2881622931179.7426236-UTR-H-elongata_contig77407:282..288Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77407 283..288 +
1691679730.912712-UTR-H-elongata_contig77407:282..2881691679730.912712-UTR-H-elongata_contig77407:282..288Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig77407 283..288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.7616453-CDS-H-elongata_contig77407:288..4231622931179.7616453-CDS-H-elongata_contig77407:288..423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77407 289..423 +
1691679730.92845-CDS-H-elongata_contig77407:288..4231691679730.92845-CDS-H-elongata_contig77407:288..423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77407 289..423 +
1622931179.779985-CDS-H-elongata_contig77407:1266..14851622931179.779985-CDS-H-elongata_contig77407:1266..1485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77407 1267..1485 +
1691679730.93795-CDS-H-elongata_contig77407:1266..14851691679730.93795-CDS-H-elongata_contig77407:1266..1485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77407 1267..1485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77407.15417.1

>prot_H-elongata_contig77407.15417.1 ID=prot_H-elongata_contig77407.15417.1|Name=mRNA_H-elongata_contig77407.15417.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MQRNATGSFGALFHGPSGHYFYGFLDSKLPGTKPMTVVSKVAIDQTIWNP
IFGVMFFTYLGLAEGKSFSEIQKKIKNDLATAVMGSWSVWIPAHTINFKF
VPTSQRLLYINTIQVRLN
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mRNA from alignment at H-elongata_contig77407:283..1485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77407.15417.1 ID=mRNA_H-elongata_contig77407.15417.1|Name=mRNA_H-elongata_contig77407.15417.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1203bp|location=Sequence derived from alignment at H-elongata_contig77407:283..1485+ (Himanthalia elongata Himel1 dioecious)
GACCCAATGCAACGCAACGCGACAGGCTCATTTGGTGCGCTTTTCCACGG
TCCATCTGGCCACTACTTCTACGGCTTTTTGGACAGCAAGTTGCCTGGCA
CGAAGCCGATGACCGTGGTCTCGAAAGTGGCAATCGATCAGGTGATGACC
GTGAGCCGCTCCGCTCCTTCTCCTTTTATTATCATCATTATAATTGTAAT
TCCTCGCGATTGGATTCTCACATAATAAGCTGAGGTCAAAATCCAGCCCG
TGGTCGCAAGGTAGAAAAAACACCATCCGAACGGGAAAATGTTCAACATG
GTGTCCATACAAAAGGAAACGTCAATGGTGCATAATGCTCGGAAATGGCG
ACATCTCCAAAGAAACAGCAAATAAGCATAAAAGAGGACACAGTAGTCAA
GTAACTGCGTGTGGCTGTCGGGATGCATCCTGTTTCAAAGAACGGTTCAA
AGAACGGTTCAACAAAGAGCCGCGGATTCAATCGAAGCAAAGAAAAAGAG
ACAAACATGAAGCAAAACAAGACAAAGAAAAAAAGGAACGCCAGAGAAAG
GCAATATGGCGTCGGCAAACGAACGGGAGGGTCTTGCAGGTACTTAAAGA
AGCTCTTCCCGCTGTAAGCCGTCCTTCATAAAGTTGATCGCGATGTAGGC
ACAGGCGCTTCCGGTGTACCGTGCGTGGGTGTGCACATCACCCCTTTTGG
TGTGTTGTTTAATTTGCCGGATGGGTGTTGTATGTATTTCCGTGCATGTG
CCCAGCGGGGTTTGGGTGCGTGCCTACCTCGTGATATACCTACATACTCT
TTAGCGAACATACTAGTAGTAAATATAGTAGTACTTACGGTGCCTGGAGG
AAAGCTAGCTTCTGGTCCACGTGCATCCCGCCTTTCCGCTATTATTCACC
GTAATCATGACGTCATCGGGGGACCCCGTCGATGTTCTGGGCCGGGGGGG
TGGCGGGGCGCGGGTTGCGCAACGTTCGACGCAGACCATCTGGAACCCAA
TCTTCGGTGTGATGTTCTTCACTTACCTAGGGTTGGCTGAGGGCAAATCG
TTCTCCGAGATTCAGAAGAAGATCAAGAACGATCTCGCCACCGCGGTAAT
GGGGTCTTGGTCGGTCTGGATCCCGGCACACACCATTAACTTCAAGTTCG
TGCCAACTTCGCAGAGGTTGCTGTACATCAACACCATCCAGGTACGGTTA
AAT
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Coding sequence (CDS) from alignment at H-elongata_contig77407:283..1485+

>mRNA_H-elongata_contig77407.15417.1 ID=mRNA_H-elongata_contig77407.15417.1|Name=mRNA_H-elongata_contig77407.15417.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig77407:283..1485+ (Himanthalia elongata Himel1 dioecious)
ATGCAACGCAACGCGACAGGCTCATTTGGTGCGCTTTTCCACGGTCCATC
TGGCCACTACTTCTACGGCTTTTTGGACAGCAAGTTGCCTGGCACGAAGC
CGATGACCGTGGTCTCGAAAGTGGCAATCGATCAGATGCAACGCAACGCG
ACAGGCTCATTTGGTGCGCTTTTCCACGGTCCATCTGGCCACTACTTCTA
CGGCTTTTTGGACAGCAAGTTGCCTGGCACGAAGCCGATGACCGTGGTCT
CGAAAGTGGCAATCGATCAGACCATCTGGAACCCAATCTTCGGTGTGATG
TTCTTCACTTACCTAGGGTTGGCTGAGGGCAAATCGTTCTCCGAGATTCA
GAAGAAGATCAAGAACGATCTCGCCACCGCGGTAATGGGGTCTTGGTCGG
TCTGGATCCCGGCACACACCATTAACTTCAAGTTCGTGCCAACTTCGCAG
AGGTTGCTGTACATCAACACCATCCAGGTACGGTTAAATACCATCTGGAA
CCCAATCTTCGGTGTGATGTTCTTCACTTACCTAGGGTTGGCTGAGGGCA
AATCGTTCTCCGAGATTCAGAAGAAGATCAAGAACGATCTCGCCACCGCG
GTAATGGGGTCTTGGTCGGTCTGGATCCCGGCACACACCATTAACTTCAA
GTTCGTGCCAACTTCGCAGAGGTTGCTGTACATCAACACCATCCAGGTAC
GGTTAAAT
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