mRNA_H-elongata_contig77083.15382.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig77083.15382.1
Unique NamemRNA_H-elongata_contig77083.15382.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77083.15382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig77083contigH-elongata_contig77083:534..1363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size756
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931175.474073-CDS-H-elongata_contig77083:533..7231622931175.474073-CDS-H-elongata_contig77083:533..723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77083 534..723 +
1691679729.197068-CDS-H-elongata_contig77083:533..7231691679729.197068-CDS-H-elongata_contig77083:533..723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77083 534..723 +
1622931175.4891486-CDS-H-elongata_contig77083:799..13621622931175.4891486-CDS-H-elongata_contig77083:799..1362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77083 800..1362 +
1691679729.2073932-CDS-H-elongata_contig77083:799..13621691679729.2073932-CDS-H-elongata_contig77083:799..1362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig77083 800..1362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig77083.15382.1prot_H-elongata_contig77083.15382.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig77083 534..1362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig77083.15382.1

>prot_H-elongata_contig77083.15382.1 ID=prot_H-elongata_contig77083.15382.1|Name=mRNA_H-elongata_contig77083.15382.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
YSTFYDVKSNTVSHSFSHHVKTNTVSHSISHHVSFFALPHTFTCDLESNT
ASESFFHDVESNGMIIVIMLVVCWRRRAIKKNVQNVRIPHLHKTVSISAA
TRGTDIPRSTNGDVIFDPLPGYHAMEPEIADSEAIIDIMDEGNSARAADR
VQGFNVEATDRVVITSTTEGRASPRKVALDFPLPFDPRNDSAHADVANAH
ASKMPSSSRASLGSSRMMPSNEILSVAEAVIETANAVACSSSVPIVSEAA
G
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mRNA from alignment at H-elongata_contig77083:534..1363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig77083.15382.1 ID=mRNA_H-elongata_contig77083.15382.1|Name=mRNA_H-elongata_contig77083.15382.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=830bp|location=Sequence derived from alignment at H-elongata_contig77083:534..1363+ (Himanthalia elongata Himel1 dioecious)
TACTCCACCTTCTACGACGTCAAGTCCAACACGGTCTCCCACTCTTTCTC
CCACCATGTCAAGACCAACACGGTTTCCCACTCAATCTCCCACCATGTCA
GTTTCTTCGCGCTTCCCCACACTTTTACATGCGACCTCGAGTCCAACACA
GCTTCCGAGTCGTTCTTCCACGACGTCGAGTCCAATGGAAGCACCCGCTG
AATCTGAAATGAGATCTTCGTCACCTGCACTGATTGCTGGGGTGGTGGCG
GGGGCGGTGGCAGTAGTGATAATTGTGATCATGTTGGTCGTGTGCTGGAG
AAGACGGGCCATCAAGAAAAACGTTCAAAACGTTCGGATTCCACACTTGC
ACAAGACCGTCAGTATTTCAGCTGCCACTAGAGGCACCGATATCCCACGT
TCCACCAATGGCGACGTAATCTTCGATCCTTTGCCAGGATATCATGCTAT
GGAACCCGAGATCGCTGACTCGGAAGCTATTATTGATATCATGGACGAGG
GCAATTCAGCAAGGGCTGCTGATAGGGTGCAAGGCTTCAATGTGGAGGCA
ACCGATCGTGTCGTAATAACCTCAACGACAGAGGGCAGAGCTTCACCAAG
AAAAGTGGCCCTGGATTTTCCACTCCCGTTCGACCCAAGGAACGATTCAG
CCCATGCCGATGTTGCAAATGCACATGCAAGCAAGATGCCATCTTCGAGT
CGAGCATCATTGGGAAGTAGCAGAATGATGCCAAGCAACGAAATATTGTC
TGTGGCCGAAGCAGTCATCGAGACAGCCAACGCGGTGGCTTGTTCGTCGA
GCGTTCCTATCGTAAGTGAGGCAGCGGGAT
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Coding sequence (CDS) from alignment at H-elongata_contig77083:534..1363+

>mRNA_H-elongata_contig77083.15382.1 ID=mRNA_H-elongata_contig77083.15382.1|Name=mRNA_H-elongata_contig77083.15382.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig77083:534..1363+ (Himanthalia elongata Himel1 dioecious)
TACTCCACCTTCTACGACGTCAAGTCCAACACGGTCTCCCACTCTTTCTC
CCACCATGTCAAGACCAACACGGTTTCCCACTCAATCTCCCACCATGTCA
GTTTCTTCGCGCTTCCCCACACTTTTACATGCGACCTCGAGTCCAACACA
GCTTCCGAGTCGTTCTTCCACGACGTCGAGTCCAATGGAATACTCCACCT
TCTACGACGTCAAGTCCAACACGGTCTCCCACTCTTTCTCCCACCATGTC
AAGACCAACACGGTTTCCCACTCAATCTCCCACCATGTCAGTTTCTTCGC
GCTTCCCCACACTTTTACATGCGACCTCGAGTCCAACACAGCTTCCGAGT
CGTTCTTCCACGACGTCGAGTCCAATGGAATGATAATTGTGATCATGTTG
GTCGTGTGCTGGAGAAGACGGGCCATCAAGAAAAACGTTCAAAACGTTCG
GATTCCACACTTGCACAAGACCGTCAGTATTTCAGCTGCCACTAGAGGCA
CCGATATCCCACGTTCCACCAATGGCGACGTAATCTTCGATCCTTTGCCA
GGATATCATGCTATGGAACCCGAGATCGCTGACTCGGAAGCTATTATTGA
TATCATGGACGAGGGCAATTCAGCAAGGGCTGCTGATAGGGTGCAAGGCT
TCAATGTGGAGGCAACCGATCGTGTCGTAATAACCTCAACGACAGAGGGC
AGAGCTTCACCAAGAAAAGTGGCCCTGGATTTTCCACTCCCGTTCGACCC
AAGGAACGATTCAGCCCATGCCGATGTTGCAAATGCACATGCAAGCAAGA
TGCCATCTTCGAGTCGAGCATCATTGGGAAGTAGCAGAATGATGCCAAGC
AACGAAATATTGTCTGTGGCCGAAGCAGTCATCGAGACAGCCAACGCGGT
GGCTTGTTCGTCGAGCGTTCCTATCGTAAGTGAGGCAGCGGGATGATAAT
TGTGATCATGTTGGTCGTGTGCTGGAGAAGACGGGCCATCAAGAAAAACG
TTCAAAACGTTCGGATTCCACACTTGCACAAGACCGTCAGTATTTCAGCT
GCCACTAGAGGCACCGATATCCCACGTTCCACCAATGGCGACGTAATCTT
CGATCCTTTGCCAGGATATCATGCTATGGAACCCGAGATCGCTGACTCGG
AAGCTATTATTGATATCATGGACGAGGGCAATTCAGCAAGGGCTGCTGAT
AGGGTGCAAGGCTTCAATGTGGAGGCAACCGATCGTGTCGTAATAACCTC
AACGACAGAGGGCAGAGCTTCACCAAGAAAAGTGGCCCTGGATTTTCCAC
TCCCGTTCGACCCAAGGAACGATTCAGCCCATGCCGATGTTGCAAATGCA
CATGCAAGCAAGATGCCATCTTCGAGTCGAGCATCATTGGGAAGTAGCAG
AATGATGCCAAGCAACGAAATATTGTCTGTGGCCGAAGCAGTCATCGAGA
CAGCCAACGCGGTGGCTTGTTCGTCGAGCGTTCCTATCGTAAGTGAGGCA
GCGGGA
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