mRNA_H-elongata_contig77080.15381.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig77080.15381.1 vs. uniprot
Match: D8LKX7_ECTSI (K+ transporter, Kef-type n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX7_ECTSI) HSP 1 Score: 254 bits (649), Expect = 1.040e-76 Identity = 131/194 (67.53%), Postives = 161/194 (82.99%), Query Frame = 1
Query: 1 KVLAIGWWQLWQRSWSARFDLIVLLASLAGYLVVGVPGNRLALYVDLHPGLSDVFEVPRALVVLRLLTVFPALRRLLETIFTVSVMVVRMMVLYLCVSYSFAAIGMAIFADSKSDLLAARYSFSTLPEALLALFFLTVTNNWNDLLYPLVNSVSAGGWSALYFVTYMLFCSTVVLDVLVGVVIEGFRVSARGPD 582
KVLA+G +L + W+ RFDLI+L LA YL VG+PGNR ALYVD HP LSDV E+P AL VLRL+TVFP LR+LLET+ TV+ M++++MVLY CVSY+FA +GMAIF++++SDLL RYSFSTLPEA + LFFLTV+NNWNDLLYPLV+S G WSA+YFV YMLFC+T++LDVL GVVIEGFRVS +GP+
Sbjct: 511 KVLAVGGRRLLRLHWAHRFDLIILATCLASYLFVGMPGNRRALYVDHHPLLSDVIELPMALAVLRLVTVFPQLRKLLETMSTVAGMLMKIMVLYSCVSYTFATLGMAIFSNARSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNPLGRWSAIYFVAYMLFCATMMLDVLTGVVIEGFRVSTKGPE 704
BLAST of mRNA_H-elongata_contig77080.15381.1 vs. uniprot
Match: A0A7S1CFS5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFS5_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.210e-25 Identity = 71/193 (36.79%), Postives = 113/193 (58.55%), Query Frame = 1
Query: 1 KVLAIGWWQLWQRSWSARFDLIVLLASLAGYLV-VGVPGNRLALYVDLHPGLSDVFEVPRALVVLRLLTVFPALRRLLETIFTVSVMVVRMMVLYLCVSYSFAAIGMAIFAD-SKSDLLAARYSFSTLPEALLALFFLTVTNNWNDLLYPLVNSVSAGGWSALYFVTYMLFCSTVVLDVLVGVVIEGFRVSAR 573
++ A G+ + W +W AR D++ + SLA ++ + PG L D GL D + R+L +R+L+VF R + T+ + +R+ VLY V+Y+FA +GM F D + D R+ F T A+LAL L+VTNNW D++YP++ +AG W+ALYFV Y + C ++L++L G+VIE + S +
Sbjct: 209 RIAANGFPRFWASAW-ARVDVVAVAVSLAVCILSLCAPGATLTQLPD--AGLQDAIGLLRSLRYVRVLSVFERFRAFVATVADGVAVAMRLFVLYFSVTYAFAVVGMEWFGDLGQHDDGEQRWGFETFGAAMLALTQLSVTNNWQDVMYPVLRDSAAGRWAALYFVAYFVLCVILLLNILSGIVIEAYSNSKQ 398
BLAST of mRNA_H-elongata_contig77080.15381.1 vs. uniprot
Match: A0A7S3D6J8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D6J8_9EUKA) HSP 1 Score: 62.8 bits (151), Expect = 3.930e-8 Identity = 55/194 (28.35%), Postives = 95/194 (48.97%), Query Frame = 1
Query: 1 KVLAIGWWQLWQRSWSARFDLIVLLASLAGYLVVGVPGNRLALYVDLHPGLSDV---FEVPRALVVLRLLTVFPALRRLLETIFTVSVMVVRMMVLYLCVSYSFAAIGMAIF-----ADSKSDLLAARYSFSTLPEALLALFFLTVTNNWNDLLYPLVNSVSAGGWSALYFVTYMLFCSTVVLDVLVGVVIEGF 558
K+ A+G + + W+ FD V+L+S A +V Y+ + GLS V R+L VLR L F R L T + ++V + + Y F IG +F D + D +F+++ ++ LF + V NNWN +LYP++N AG W++LYF+ + ++ +++V +V++ F
Sbjct: 386 KLYALGVKEYVRDRWNV-FDFFVVLSSYASLSLV---------YLGVF-GLSSAPAWTSVSRSLRVLRTLNAFKRFRILARTFLRTAPILVSLTMFSFVAFYFFGVIGTEVFYGYLSEDDEYD--DPHANFASIGNTIILLFQMLVINNWNSILYPMMNV--AGPWASLYFLLFHFITVVILANLIVAIVLQVF 564
BLAST of mRNA_H-elongata_contig77080.15381.1 vs. uniprot
Match: A0A8C9Z1R5_SANLU (Uncharacterized protein n=1 Tax=Sander lucioperca TaxID=283035 RepID=A0A8C9Z1R5_SANLU) HSP 1 Score: 62.8 bits (151), Expect = 4.300e-8 Identity = 51/193 (26.42%), Postives = 94/193 (48.70%), Query Frame = 1
Query: 1 KVLAIGWWQLWQRSWSARFDLIVLLASLAGYLVVGVPGNRLALYVDLHPGLSDVFEVPRALVVLRLLTVFPALRRLLETIFTVSVMVVRMMVLYLCVSYSFAAIGMAIFADS------KSDLLAARYSFSTLPEALLALFFLTVTNNWNDLLYPLVNSVSAGGWSALYFVTYMLFCSTVVLDVLVGVVIEGFR 561
K+LA+ W + R W+ FD ++++ SL + ++ RL+ V R L +RLL P L+R L + + +L L V + F+ +GM +F +++ R +F TL A++ +F + NWN ++Y + + S W +YFV ++ V+L++LVG+V++ F+
Sbjct: 407 KLLALAW--TYFRDWNNSFDFVIVIISL--WEIISNADGRLS-----------VLRAFRLLRFVRLLHFLPYLKRQLLVLKRTMKEASTLCMLLLFVIFIFSVMGMHLFGGKYYYETQHGEVIVERKNFDTLLWAMVTVFQILTQENWNLVMYNAMATTSE--WGCIYFVVVIILGKHVLLNILVGIVVQSFQ 582
BLAST of mRNA_H-elongata_contig77080.15381.1 vs. uniprot
Match: UPI0016538D89 (voltage-dependent T-type calcium channel subunit alpha-1H-like isoform X1 n=6 Tax=Sander lucioperca TaxID=283035 RepID=UPI0016538D89) HSP 1 Score: 62.8 bits (151), Expect = 4.510e-8 Identity = 51/193 (26.42%), Postives = 94/193 (48.70%), Query Frame = 1
Query: 1 KVLAIGWWQLWQRSWSARFDLIVLLASLAGYLVVGVPGNRLALYVDLHPGLSDVFEVPRALVVLRLLTVFPALRRLLETIFTVSVMVVRMMVLYLCVSYSFAAIGMAIFADS------KSDLLAARYSFSTLPEALLALFFLTVTNNWNDLLYPLVNSVSAGGWSALYFVTYMLFCSTVVLDVLVGVVIEGFR 561
K+LA+ W + R W+ FD ++++ SL + ++ RL+ V R L +RLL P L+R L + + +L L V + F+ +GM +F +++ R +F TL A++ +F + NWN ++Y + + S W +YFV ++ V+L++LVG+V++ F+
Sbjct: 506 KLLALAW--TYFRDWNNSFDFVIVIISL--WEIISNADGRLS-----------VLRAFRLLRFVRLLHFLPYLKRQLLVLKRTMKEASTLCMLLLFVIFIFSVMGMHLFGGKYYYETQHGEVIVERKNFDTLLWAMVTVFQILTQENWNLVMYNAMATTSE--WGCIYFVVVIILGKHVLLNILVGIVVQSFQ 681
BLAST of mRNA_H-elongata_contig77080.15381.1 vs. uniprot
Match: UPI00148FB1BF (voltage-dependent T-type calcium channel subunit alpha-1H-like n=4 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI00148FB1BF) HSP 1 Score: 61.6 bits (148), Expect = 1.120e-7 Identity = 51/193 (26.42%), Postives = 94/193 (48.70%), Query Frame = 1
Query: 1 KVLAIGWWQLWQRSWSARFDLIVLLASLAGYLVVGVPGNRLALYVDLHPGLSDVFEVPRALVVLRLLTVFPALRRLLETIFTVSVMVVRMMVLYLCVSYSFAAIGMAIFADS------KSDLLAARYSFSTLPEALLALFFLTVTNNWNDLLYPLVNSVSAGGWSALYFVTYMLFCSTVVLDVLVGVVIEGFR 561
K+LA+ W + W+ FD ++++ SL + V+G + V R L +RLL P L R L + + +L L +++ F+ +GM +F D++ R +F TL +++ +F + +WN +LY +++ S W+ LYFV ++ V+L+VLVG+V++ F+
Sbjct: 491 KLLALKWEYF--KDWNNNFDFVLVIISL--WEVIGKAEGK-----------PSVLRSLRLLRFVRLLHFLPYLERQLRVLKKTFEEASALFLLLLSLNFVFSVLGMLLFGGKFQFKTKHGDIVPDRKNFDTLLWSMVTVFQILTQEDWNLVLYNAMSTTSP--WAILYFVVLIMVGKYVLLNVLVGIVVQSFQ 666
BLAST of mRNA_H-elongata_contig77080.15381.1 vs. uniprot
Match: UPI0007DB6C63 (voltage-dependent T-type calcium channel subunit alpha-1G n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI0007DB6C63) HSP 1 Score: 61.6 bits (148), Expect = 1.170e-7 Identity = 53/174 (30.46%), Postives = 91/174 (52.30%), Query Frame = 1
Query: 55 FDLIVLLASLAGYLVVGVPGNRLALYVDLHPGLSDVFEVPRALVVLRLLTVFPALRRLLETIFTVSVMVVRMMVLYLCVSYSFAAIGMAIF-----ADSKSDLLAARYSFSTLPEALLALFFLTVTNNWNDLLYPLVNSVSAGGWSALYFVTYMLFCSTVVLDVLVGVVIEGFR 561
FD I+++ S+ + +VG G GLS V R + VL+L+ PAL+R L + V +L + + F+ +GM +F ++ D L R +F +L A++ +F + +WN +LY + S S+ W+ALYF+ M F + V+ ++LV +++EGFR
Sbjct: 744 FDGIIVVISV--WEIVGQQGG----------GLS-VLRTFRLMRVLKLVRFMPALQRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHLFGCKFASERDGDTLPDRKNFDSLLWAIVTVFQILTQEDWNKVLYNGMASTSS--WAALYFIALMTFGNYVLFNLLVAILVEGFR 902
BLAST of mRNA_H-elongata_contig77080.15381.1 vs. uniprot
Match: A0A8D0A681_SANLU (Uncharacterized protein n=2 Tax=Sander lucioperca TaxID=283035 RepID=A0A8D0A681_SANLU) HSP 1 Score: 61.2 bits (147), Expect = 1.510e-7 Identity = 48/193 (24.87%), Postives = 96/193 (49.74%), Query Frame = 1
Query: 1 KVLAIGWWQLWQRSWSARFDLIVLLASLAGYLVVGVPGNRLALYVDLHPGLSDVFEVPRALVVLRLLTVFPALRRLLETIFTVSVMVVRMMVLYLCVSYSFAAIGMAIFADSK------SDLLAARYSFSTLPEALLALFFLTVTNNWNDLLYPLVNSVSAGGWSALYFVTYMLFCSTVVLDVLVGVVIEGFR 561
K+LA+ W + R W+ FD ++++ SL + ++ R++ V R L ++LL P L+R L + + +L LC ++ F+ +GM +F +++ R +F TL A++ +F + +WN ++Y + + S W+ +YFV ++ V+L++LVG+V++ F+
Sbjct: 495 KLLALTW--TYFRDWNNIFDFVIVIISL--WEIISEADGRVS-----------VLRAFRLLRFVKLLHFLPYLKRQLLMLKWTMKESFTLCMLLLCFTFIFSVMGMHLFGGKSYYETQHGEVIVERKNFDTLLWAMVTVFQILTQEDWNRVMYNAMATTSK--WACIYFVVVIILGKHVLLNILVGIVVQSFQ 670
BLAST of mRNA_H-elongata_contig77080.15381.1 vs. uniprot
Match: A0A812XVX9_9DINO (TPCN2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812XVX9_9DINO) HSP 1 Score: 60.5 bits (145), Expect = 1.910e-7 Identity = 49/186 (26.34%), Postives = 87/186 (46.77%), Query Frame = 1
Query: 7 LAIGWWQLWQRSWSARFDLIVLLASLAGYLVVGVPGNRLALYVDLHPGLSDVFEVPRALVVLRLLTVFPALRRLLETIFTVSVMVVRMMVLYLCVSYSFAAIGMAIFADSKSDLLAA-RYSFSTLPEALLALFFLTVTNNWNDLLYPLVNSVSAGGWSALYFVTYMLFCSTVVLDVLVGVVIEGFR 561
+A GW + W + F L+ +A L +L GL +VF R + L++ P LRRL +IF ++ + VL+ F +G+A+F D D A +F+ P+A LA++ LT T N+ D++ P ++ G L+FV + ++L +L+ +V + ++
Sbjct: 71 VAFGWRHFKDKKWDSVFALLTFMAVLDWFLYYA-------------GGLHEVFRFSRPFRPILLISKLPGLRRLAASIFHTFFVIFDIAVLFAITVAFFGLLGVALFNDDHVDGYALDNDNFNNFPDAALAIYILTTTENFPDVMMPALHDRPVLG--LLFFVVALFIFLWLLLPLLLAIVYDRYK 241
BLAST of mRNA_H-elongata_contig77080.15381.1 vs. uniprot
Match: UPI00106E94D7 (voltage-dependent T-type calcium channel subunit alpha-1H-like isoform X1 n=3 Tax=Perca flavescens TaxID=8167 RepID=UPI00106E94D7) HSP 1 Score: 58.9 bits (141), Expect = 9.380e-7 Identity = 50/193 (25.91%), Postives = 94/193 (48.70%), Query Frame = 1
Query: 1 KVLAIGWWQLWQRSWSARFDLIVLLASLAGYLVVGVPGNRLALYVDLHPGLSDVFEVPRALVVLRLLTVFPALRRLLETIFTVSVMVVRMMVLYLCVSYSFAAIGMAIFADS------KSDLLAARYSFSTLPEALLALFFLTVTNNWNDLLYPLVNSVSAGGWSALYFVTYMLFCSTVVLDVLVGVVIEGFR 561
K+LA+ W + R W+ FD ++ + SL + ++ RL+ V R L +RLL P L+R L + + +L L V + F+ +G+ +F D++ R +F TL A++ +F + +WN ++Y + + S W+ +YFV ++ V+L++LVG+V++ F+
Sbjct: 545 KLLALTW--TYFRDWNNIFDFLIAIISL--WELISKADGRLS-----------VLRAFRLLRFVRLLHFLPYLKRQLLVLKRTMTEAATLCMLLLFVIFIFSIVGIHLFGGKFYYETQHGDVIIERRNFDTLLWAMVTVFQILTQEDWNLVMYNAMANSSQ--WACIYFVVVIILGKHVLLNILVGIVVQSFQ 720 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig77080.15381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig77080.15381.1 >prot_H-elongata_contig77080.15381.1 ID=prot_H-elongata_contig77080.15381.1|Name=mRNA_H-elongata_contig77080.15381.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp KVLAIGWWQLWQRSWSARFDLIVLLASLAGYLVVGVPGNRLALYVDLHPGback to top mRNA from alignment at H-elongata_contig77080:402..2295- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig77080.15381.1 ID=mRNA_H-elongata_contig77080.15381.1|Name=mRNA_H-elongata_contig77080.15381.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1894bp|location=Sequence derived from alignment at H-elongata_contig77080:402..2295- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig77080:402..2295- >mRNA_H-elongata_contig77080.15381.1 ID=mRNA_H-elongata_contig77080.15381.1|Name=mRNA_H-elongata_contig77080.15381.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig77080:402..2295- (Himanthalia elongata Himel1 dioecious)back to top |