mRNA_H-elongata_contig76281.15306.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig76281.15306.1
Unique NamemRNA_H-elongata_contig76281.15306.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig76281.15306.1 vs. uniprot
Match: A0A6J8BXS5_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BXS5_MYTCO)

HSP 1 Score: 65.9 bits (159), Expect = 1.200e-10
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   25 IQKLVGFVSDGASCMVGKRGGAAALLKEENPNLIGTHCIAHRGALAASTACASVPLTTETDQVVTKVRRVIRCS 246
            ++K+    SDGAS M+G++GG AALLKE  P LI  HC+AHR ALA+S A A+VP   +   +V ++ R  + S
Sbjct:  825 LEKMCALGSDGASVMLGRKGGVAALLKESVPTLIANHCVAHRLALASSQAAAAVPYLKKFKAIVEQLYRFYQYS 898          
BLAST of mRNA_H-elongata_contig76281.15306.1 vs. uniprot
Match: A0A8K0EBI2_BRALA (GAK protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0EBI2_BRALA)

HSP 1 Score: 65.5 bits (158), Expect = 1.660e-10
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   22 SIQKLVGFVSDGASCMVGKRGGAAALLKEENPNLIGTHCIAHRGALAASTACASVPLTTET 204
            S+QK+ GF SDGA+CM+G++GG A LLK +N  +I  HC+AHR ALA   A   V    ET
Sbjct:  896 SLQKVAGFGSDGAACMIGRKGGVATLLKVDNQTMINIHCVAHRAALAIGQAGGRVKYIGET 956          
BLAST of mRNA_H-elongata_contig76281.15306.1 vs. uniprot
Match: A0A2G8KX78_STIJA (Putative zinc finger protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KX78_STIJA)

HSP 1 Score: 65.1 bits (157), Expect = 2.190e-10
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   28 QKLVGFVSDGASCMVGKRGGAAALLKEENPNLIGTHCIAHRGALAASTACASVPLTTETDQVVTKV 225
            +KLVGF SDGAS M GKR G AA LKE  P L+  HC++HR  LA   A  ++PL  + DQ +  +
Sbjct:  276 KKLVGFGSDGASVMTGKRSGVAARLKEHQPQLVAVHCVSHRLELAIKDAMKTIPLYQKMDQFLLSI 341          
BLAST of mRNA_H-elongata_contig76281.15306.1 vs. uniprot
Match: UPI001603FE13 (zinc finger protein 862-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001603FE13)

HSP 1 Score: 64.3 bits (155), Expect = 4.110e-10
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   22 SIQKLVGFVSDGASCMVGKRGGAAALLKEENPNLIGTHCIAHRGALAASTA 174
            SIQK+ GF SDGA+CM+G R G A  LKEEN  ++  HCIAHR ALA   A
Sbjct:  355 SIQKVAGFGSDGAACMIGNRSGVATQLKEENARIVSIHCIAHRLALAVGQA 405          
BLAST of mRNA_H-elongata_contig76281.15306.1 vs. uniprot
Match: A0A6J8DX34_MYTCO (DUF4371 domain-containing protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DX34_MYTCO)

HSP 1 Score: 62.0 bits (149), Expect = 4.960e-10
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   25 IQKLVGFVSDGASCMVGKRGGAAALLKEENPNLIGTHCIAHRGALAASTACASVP 189
            ++ +    SDGAS M+G++GG AAL+KE  P LI  HC+AHR ALA+S A A+VP
Sbjct:  104 LEMMCALGSDGASVMLGRKGGVAALMKESVPTLIANHCVAHRLALASSQAAAAVP 158          
BLAST of mRNA_H-elongata_contig76281.15306.1 vs. uniprot
Match: A0A8J9YVS8_BRALA (ZNF862 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YVS8_BRALA)

HSP 1 Score: 62.4 bits (150), Expect = 1.930e-9
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   22 SIQKLVGFVSDGASCMVGKRGGAAALLKEENPNLIGTHCIAHRGALA 162
            SIQK+ GF SDGA+CM+G R G A  LK+EN  ++  HC+AHR ALA
Sbjct:  215 SIQKVAGFGSDGAACMIGNRSGVATQLKQENDKIVSIHCVAHRCALA 261          
BLAST of mRNA_H-elongata_contig76281.15306.1 vs. uniprot
Match: A0A2G8JIN4_STIJA (Putative zinc finger protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JIN4_STIJA)

HSP 1 Score: 60.5 bits (145), Expect = 9.180e-9
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query:   19 CSIQ------KLVGFVSDGASCMVGKRGGAAALLKEENPNLIGTHCIAHRGALAASTACASVPLTTETDQVVTKV 225
            C IQ      KLVGF SDGAS M G+R G  A +KE  P L   HCIAHR  LA   A  +VP+  + DQ +  +
Sbjct:  235 CGIQEPELWSKLVGFGSDGASVMTGRRSGVGARMKEHQPKLQTVHCIAHRLELAIKQASKNVPMVCKMDQFLINI 309          
BLAST of mRNA_H-elongata_contig76281.15306.1 vs. uniprot
Match: A0A2G8KZ15_STIJA (Putative zinc finger protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KZ15_STIJA)

HSP 1 Score: 60.5 bits (145), Expect = 9.330e-9
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query:   19 CSIQ------KLVGFVSDGASCMVGKRGGAAALLKEENPNLIGTHCIAHRGALAASTACASVPLTTETDQVVTKV 225
            C IQ      KLVGF SDGAS M G+R G  A +KE  P L   HCIAHR  LA   A  +VP+  + DQ +  +
Sbjct:  261 CGIQEPELWSKLVGFGSDGASVMTGRRSGVGARMKEHQPKLQTVHCIAHRLELAIKQASKNVPMVCKMDQFLINI 335          
BLAST of mRNA_H-elongata_contig76281.15306.1 vs. uniprot
Match: UPI001E1CD72E (protein ZBED8-like n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CD72E)

HSP 1 Score: 58.5 bits (140), Expect = 3.520e-8
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   22 SIQKLVGFVSDGASCMVGKRGGAAALLKEENPNLIGTHCIAHRGALAASTACASVPLTTET 204
            S  KLVG  +DGA  M+G R G  AL+K++NP++I THC+ HR ALA+ T  A +  T ET
Sbjct:   44 SSAKLVGVCTDGAPSMLGSRSGFMALVKKKNPDIITTHCLIHREALASKTLPAPLKATLET 104          
BLAST of mRNA_H-elongata_contig76281.15306.1 vs. uniprot
Match: A0A8C7ZT64_9TELE (DUF4371 domain-containing protein n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C7ZT64_9TELE)

HSP 1 Score: 57.8 bits (138), Expect = 7.970e-8
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   16 GCSIQKLVGFVSDGASCMVGKRGGAAALLKEENPNLIGTHCIAHRGALAASTACASVPL 192
            G  +Q++V   SDGAS M+GKR G AALLK++ P+L   HC+AHR  L+   A   +PL
Sbjct:  105 GLDMQRMVMLTSDGASVMLGKRNGVAALLKQQIPHLTEQHCVAHREDLSIDDAWKDLPL 163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig76281.15306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J8BXS5_MYTCO1.200e-1047.30Uncharacterized protein n=1 Tax=Mytilus coruscus T... [more]
A0A8K0EBI2_BRALA1.660e-1052.46GAK protein n=1 Tax=Branchiostoma lanceolatum TaxI... [more]
A0A2G8KX78_STIJA2.190e-1050.00Putative zinc finger protein n=1 Tax=Stichopus jap... [more]
UPI001603FE134.110e-1060.78zinc finger protein 862-like n=1 Tax=Branchiostoma... [more]
A0A6J8DX34_MYTCO4.960e-1054.55DUF4371 domain-containing protein n=1 Tax=Mytilus ... [more]
A0A8J9YVS8_BRALA1.930e-959.57ZNF862 protein n=1 Tax=Branchiostoma lanceolatum T... [more]
A0A2G8JIN4_STIJA9.180e-946.67Putative zinc finger protein n=1 Tax=Stichopus jap... [more]
A0A2G8KZ15_STIJA9.330e-946.67Putative zinc finger protein n=1 Tax=Stichopus jap... [more]
UPI001E1CD72E3.520e-850.82protein ZBED8-like n=1 Tax=Portunus trituberculatu... [more]
A0A8C7ZT64_9TELE7.970e-849.15DUF4371 domain-containing protein n=1 Tax=Oryzias ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig76281contigH-elongata_contig76281:2421..2675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.1
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog400682.PAC_15701254
Preferred nameKIAA1586
EggNOG OGs28TCR@1,2R035@2759,39TI0@33154,3BAFE@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931167.6099997-CDS-H-elongata_contig76281:2420..26751622931167.6099997-CDS-H-elongata_contig76281:2420..2675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76281 2421..2675 -
1691679726.0217927-CDS-H-elongata_contig76281:2420..26751691679726.0217927-CDS-H-elongata_contig76281:2420..2675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig76281 2421..2675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig76281.15306.1prot_H-elongata_contig76281.15306.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig76281 2421..2675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig76281.15306.1

>prot_H-elongata_contig76281.15306.1 ID=prot_H-elongata_contig76281.15306.1|Name=mRNA_H-elongata_contig76281.15306.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
LEATPGCSIQKLVGFVSDGASCMVGKRGGAAALLKEENPNLIGTHCIAHR
GALAASTACASVPLTTETDQVVTKVRRVIRCSWSY
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mRNA from alignment at H-elongata_contig76281:2421..2675-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig76281.15306.1 ID=mRNA_H-elongata_contig76281.15306.1|Name=mRNA_H-elongata_contig76281.15306.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at H-elongata_contig76281:2421..2675- (Himanthalia elongata Himel1 dioecious)
CTCGAGGCCACACCTGGTTGCAGCATCCAGAAGCTTGTGGGATTTGTTAG CGACGGTGCGTCGTGCATGGTGGGCAAAAGAGGAGGAGCAGCAGCTCTTC TAAAGGAGGAAAACCCTAACCTCATCGGTACGCACTGCATTGCGCACAGG GGAGCTCTCGCAGCCAGCACAGCGTGTGCCTCTGTGCCGCTGACGACTGA GACGGACCAAGTTGTGACTAAGGTAAGGCGTGTCATCCGATGCTCGTGGT CTTAT
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Coding sequence (CDS) from alignment at H-elongata_contig76281:2421..2675-

>mRNA_H-elongata_contig76281.15306.1 ID=mRNA_H-elongata_contig76281.15306.1|Name=mRNA_H-elongata_contig76281.15306.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig76281:2421..2675- (Himanthalia elongata Himel1 dioecious)
CTCGAGGCCACACCTGGTTGCAGCATCCAGAAGCTTGTGGGATTTGTTAG
CGACGGTGCGTCGTGCATGGTGGGCAAAAGAGGAGGAGCAGCAGCTCTTC
TAAAGGAGGAAAACCCTAACCTCATCGGTACGCACTGCATTGCGCACAGG
GGAGCTCTCGCAGCCAGCACAGCGTGTGCCTCTGTGCCGCTGACGACTGA
GACGGACCAAGTTGTGACTAAGGTAAGGCGTGTCATCCGATGCTCGTGGT
CTTATCTCGAGGCCACACCTGGTTGCAGCATCCAGAAGCTTGTGGGATTT
GTTAGCGACGGTGCGTCGTGCATGGTGGGCAAAAGAGGAGGAGCAGCAGC
TCTTCTAAAGGAGGAAAACCCTAACCTCATCGGTACGCACTGCATTGCGC
ACAGGGGAGCTCTCGCAGCCAGCACAGCGTGTGCCTCTGTGCCGCTGACG
ACTGAGACGGACCAAGTTGTGACTAAGGTAAGGCGTGTCATCCGATGCTC
GTGGTCTTAT
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