mRNA_H-elongata_contig7586.15271.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7586.15271.1
Unique NamemRNA_H-elongata_contig7586.15271.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7586.15271.1 vs. uniprot
Match: D8LBT3_ECTSI (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT3_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.390e-49
Identity = 102/182 (56.04%), Postives = 113/182 (62.09%), Query Frame = 3
Query:  192 MSPLLPTVPKRPWRVPCAVALVGRLHREAKDGFGGTKAVSYEKTRPGYPPHALRAIEAEICRSGYGITKKKHLLVDLGCGTGKFTREILPFARSKGLSVVGIEPVEAMRKQFVNVLPSVEAKNGTGCNMPIPDCSARAVIAAQSFHWMSSLETLREVHRVLVPGGLFVLVWNTRDSSKPWVR 737
            +S LL  V  RP  VP +      +H EA  GFGG  A  YE TRPGYP HALRAIEAEI RSG  +T    LLVDLG GTGKFTR ILPFA S+G                             G  +PIPD SARA++A QSFHWMSS  TLREVHRVLVPGGLFVL+WNTRD ++PWVR
Sbjct:    7 LSALLSRV--RPPFVPPSTKAGRWVHTEAVGGFGGNNASFYENTRPGYPAHALRAIEAEIRRSG--LTGSGELLVDLGAGTGKFTRNILPFALSEG----------------------------AGEAIPIPDSSARALVAPQSFHWMSSAATLREVHRVLVPGGLFVLMWNTRDCTRPWVR 156          
BLAST of mRNA_H-elongata_contig7586.15271.1 vs. uniprot
Match: A0A2R6WAG2_MARPO (Methyltransf_11 domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WAG2_MARPO)

HSP 1 Score: 161 bits (407), Expect = 2.640e-42
Identity = 100/293 (34.13%), Postives = 158/293 (53.92%), Query Frame = 3
Query:  237 PCAVALVGRLHREAKDGFGGTKAVSYEKTRPGYPPHALRAIEAEICRSGYGITKKKHLLVDLGCGTGKFTREILPFARSKGLSVVGIEPVEAMRKQFVNVLPSVEAKNGTGCNMPIPDCSARAVIAAQSFHWMSSLETLREVHRVLVPGGLFVLVWNTRD-SSKPWVRALEDIIDSFYGEDVPRQHGGTWKRSFQNIEQQGESGRGSTEDKSRKFFDELTEQHFKHSQLLNMDELDGLLRSISVVATRPEYEQSDASRRVQQLVETHPETRDELQK--SGKVELFYDTEVYWC 1106
            P + A   ++H  A  GF  ++ V+YE +RP YP  A+  +E  +     G+   +  ++DLG G+GKFTR +     SK   +  +EP  +MR  F ++LP+V   +GT   +P+   S  AVI AQ+FHW + +ETLRE+HRVL PGG   LVWN  D ++K WV +L D+ +  Y    P+   G WK+ +Q  E             + + F +L + HF+H  L   D + G + S S VA + +    +   R+++ V    ++ D+L++  SG ++  Y T+VYWC
Sbjct:   34 PPSNASAPKVHEVAVKGFD-SEPVAYESSRPSYPEDAVDCLEEHL-----GLRSGESAVLDLGAGSGKFTRLLA----SKNYHLTAVEPSPSMRATFADILPNVPILDGTAFAIPLESASQDAVIVAQAFHWFAQIETLREIHRVLKPGGRLGLVWNLEDRAAKKWVASLRDVYE-MYEMGTPQYRLGLWKKVWQTAE-------------AEELFSKLEDAHFEHETLCTEDLVWGRVCSKSYVACQSD----EVKARLREQVLAILKSADDLERDPSGLIKYPYKTDVYWC 298          
BLAST of mRNA_H-elongata_contig7586.15271.1 vs. uniprot
Match: A0A852ZZP6_9ACTN (SAM-dependent methyltransferase n=1 Tax=Allostreptomyces psammosilenae TaxID=1892865 RepID=A0A852ZZP6_9ACTN)

HSP 1 Score: 154 bits (388), Expect = 4.450e-40
Identity = 102/284 (35.92%), Postives = 147/284 (51.76%), Query Frame = 3
Query:  261 RLHREAKDGFGGTKAVSYEKTRPGYPPHALRAIEAEICRSGYGITKKKHLLVDLGCGTGKFTREILPFARSKGLSVVGIEPVEAMRKQFVNVLPSVEAKNGTGCNMPIPDCSARAVIAAQSFHWMSSLETLREVHRVLVPGGLFVLVWNTRDSSKPWVRALEDIIDSFYGEDVPRQHGGTWKRSFQNIEQQGESGRGSTEDKSRKFFDELTEQHFKHSQLLNMDELDGLLRSISVVATRPEYEQSDASRRVQQLVETHPETRDELQKSGKVELFYDTEVYWCHR 1112
            R+H  A  G+    A +YE++RP YP   L  + A+  R   G T     +VDLG GTGKFTR +       G  VV +EPV AMR++   +LP+VEA +GT  +  +PD SA  V+AAQ++HW    E L EV RVL P G   LVWNT D S PWVR  + +      E +P    G W+ + +                +R  +  L+E+HF +   ++ +     + S S +A   + E+  A   V+ +++ HP+TRD    +  VEL Y T+VYW  R
Sbjct:    2 RVHHVAGVGYDRA-AGAYERSRPSYPMPVLAEL-ADALRMERGRT-----VVDLGAGTGKFTRLLA----LTGARVVAVEPVRAMRERLAELLPTVEAVDGTAEHTGLPDASADVVVAAQAWHWFREEEALAEVERVLRPDGALALVWNTYDESVPWVRDYQQVYFRRAPEGLPGHRDGAWRAALE----------------ARPGWGPLSERHFPNPHRVSREGAVERMLSSSHIAAGADTERVRAE--VEAVLQAHPQTRD----ADHVELAYTTDVYWTRR 252          
BLAST of mRNA_H-elongata_contig7586.15271.1 vs. uniprot
Match: F2KEZ6_PSEBN (Methyltransf_11 domain-containing protein n=1 Tax=Pseudomonas brassicacearum (strain NFM421) TaxID=994484 RepID=F2KEZ6_PSEBN)

HSP 1 Score: 153 bits (386), Expect = 8.690e-40
Identity = 105/292 (35.96%), Postives = 148/292 (50.68%), Query Frame = 3
Query:  255 VGRLHREAKDGFGGTKAVSYEKTRPGYPPHALRAIEAEIC---RSGYGITKKKHLLVDLGCGTGKFTREILPFARSKGLSVVGIEPVEAMRKQFVNVLPSVEAKNGTGCNMPIPDCSARAVIAAQSFHWMSSLETLREVHRVLVPGGLFVLVWNTRDSSKPWVRALEDIIDSFYGEDVPRQHGGTWKRSFQNIEQQGESGRGSTEDKSRKFFDELTEQHFK--HSQLLNMDELDGLLRSISVVATRPEYEQSDASRRVQQLVETHPETRDELQKSGKVELFYDTEVYWCHRL 1115
            + R+H+ A+ G+  T+A +Y K RP YP        +EIC   R    I+ +   ++DLG GTGKFTR +     S  + V+ +EPV AMR +F   LP      GT  ++P+ D +A A+I AQ+FHW ++  TLRE+HRVL PGG   L+WN RD S  WV A+  II  + G D PR H G W+  F+                   +F E     FK  H+       LD  L S+S +A  P  E+   + ++  L++THP     L     +E  Y T+ Y C RL
Sbjct:    1 MSRVHKAAQQGYS-TEASTYTKGRPDYP--------SEICTWLRDTLDISPES-TVIDLGAGTGKFTRLL----DSLDIDVIAVEPVRAMRVEFAKHLPDTRILAGTAESIPLEDRAADALICAQAFHWFANETTLREIHRVLKPGGRLGLIWNVRDESVDWVAAITKIITPYEG-DAPRFHTGNWQLPFKGH-----------------YFSEPELTCFKQIHAGSAESVILDRFL-SVSFIAALPPAEKKVVTEKLLTLIQTHPA----LCGGKTIEFPYQTQAYLCRRL 255          
BLAST of mRNA_H-elongata_contig7586.15271.1 vs. uniprot
Match: UPI001F0B79BD (class I SAM-dependent methyltransferase n=1 Tax=Streptomyces sp. LAM7114 TaxID=2487275 RepID=UPI001F0B79BD)

HSP 1 Score: 152 bits (385), Expect = 1.180e-39
Identity = 101/281 (35.94%), Postives = 142/281 (50.53%), Query Frame = 3
Query:  264 LHREAKDGFGGTKAVSYEKTRPGYPPHALRAI-EAEICRSGYGITKKKHLLVDLGCGTGKFTREILPFARSKGLSVVGIEPVEAMRKQFVNVLPSVEAKNGTGCNMPIPDCSARAVIAAQSFHWMSSLETLREVHRVLVPGGLFVLVWNTRDSSKPWVRALEDIIDSFYGEDVPRQHGGTWKRSFQNIEQQGESGRGSTEDKSRKFFDELTEQHFKHSQLLNMDELDGLLRSISVVATRPEYEQSDASRRVQQLVETHPETRDELQKSGKVELFYDTEVYW 1103
            +H  A  G+     V YE++RP YP  AL  + +A    +G  +       VDLG GTGKFTR +       G  VV +EPV  MR++   +LP V    GT     +PD SA AV+AAQS+HW    + L EV R+L PGG   LVWNT D+S PWVR  +DII  F   D+P    G W+++F      G  G G+           ++E+H+ +     + ++   + S S VA     EQ      V  ++ +H  TR E    G+++L Y T+VYW
Sbjct:    3 VHHAAGVGYQRAAGV-YERSRPSYPMAALAELADALPLEAGRRV-------VDLGAGTGKFTRLLA----LTGAEVVAVEPVAEMRERLAELLPGVNVTAGTAEATGLPDASADAVVAAQSWHWFQEADALAEVERLLRPGGALALVWNTYDTSVPWVRDFQDIIFRFAPRDLPSPLDGGWRKAFA-----GRDGWGA-----------ISERHWPNPHSTTVTDVVERMMSSSHVAVMSPAEQEGVRAEVLSVLGSHDATRRE----GRIDLPYTTDVYW 251          
BLAST of mRNA_H-elongata_contig7586.15271.1 vs. uniprot
Match: A0A4Q7S0A4_9BURK (Methyltransferase family protein n=3 Tax=Cupriavidus TaxID=106589 RepID=A0A4Q7S0A4_9BURK)

HSP 1 Score: 152 bits (384), Expect = 1.650e-39
Identity = 104/284 (36.62%), Postives = 140/284 (49.30%), Query Frame = 3
Query:  264 LHREAKDGFGGTKAVSYEKTRPGYPPHALRAIEAEICRSGYGITKKKHLLVDLGCGTGKFTREILPFARSKGLSVVGIEPVEAMRKQFVNVLPSVEAKNGTGCNMPIPDCSARAVIAAQSFHWMSSLETLREVHRVLVPGGLFVLVWNTRDSSKPWVRALEDIIDSFYGEDVPRQHGGTWKRSFQNIEQQGESGRGSTEDKSRKFFDELTEQHFKHSQLLNMDELDGLLRSISVVATRPEYEQSDASRRVQQLVETHPETRDELQKSGKVELFYDTEVYWCHRL 1115
            +H  A  GF  T+A +Y + RP YP     A  A+  R   G+   + + VDLG GTGKFTR +     S G SV+ +EPV+AMR Q  + LP V+A  G+  +MP+PD S  AV+ AQ+FHW ++   LRE+ RVL PGG   L+WN RD S PWV  L  I+  + G D PR + G WK+ F              E         L   H  H + + +D +     S+S +A  P  EQ     R+  ++   P  R        V   Y TE Y C RL
Sbjct:    4 IHHAAAQGFS-TQADAYARGRPDYP-----AALADWLRGTLGLAPGQ-VAVDLGAGTGKFTRLLA----STGASVIAVEPVDAMRAQLSSKLPDVQALPGSAESMPLPDASVDAVVCAQAFHWFANEAALREIGRVLKPGGRLGLIWNVRDESLPWVAQLTAIMTPYEG-DAPRFYKGDWKKVF------------PAEGFGPLALTTLPYTHDGHPEQVIVDRI----MSVSFIAALPAAEQDAVRARLHAVIADDPTLRGH----DTVSFPYSTEAYCCARL 255          
BLAST of mRNA_H-elongata_contig7586.15271.1 vs. uniprot
Match: A0A3G8H8L0_9BURK (Class I SAM-dependent methyltransferase n=1 Tax=Cupriavidus pauculus TaxID=82633 RepID=A0A3G8H8L0_9BURK)

HSP 1 Score: 151 bits (382), Expect = 3.220e-39
Identity = 107/283 (37.81%), Postives = 141/283 (49.82%), Query Frame = 3
Query:  264 LHREAKDGFGGTKAVSYEKTRPGYPPHALRAIEAEICRSGYGITKKKHLLVDLGCGTGKFTREILPFARSKGLSVVGIEPVEAMRKQFVNVLPSVEAKNGTGCNMPIPDCSARAVIAAQSFHWMSSLETLREVHRVLVPGGLFVLVWNTRDSSKPWVRALEDIIDSFYGEDVPRQHGGTWKRSFQNIEQQGESGRGSTEDKSRKFFDELTEQHFKHSQLLNMDELDGLLRSISVVATRPEYEQSDASRRVQQLVETHPETRDELQKSGKVELFYDTEVYWCHR 1112
            LH  A  GF  T+A +Y + RP YP  AL     +      G T     +VDLG GTGKFTR + P     G SVV +EPV+AMR Q    LP V A  G+  +MP+ D S  AV+ AQ+FHW ++   +RE+HRVL PGG   L+WN RD + PWV AL  I+  + G D PR + G WKR F         G G            L    + H+       +D ++ S+S +A+ P  EQ     R+Q +++T P  R        V   Y TE Y C R
Sbjct:    4 LHPAAAQGFS-TQADTYARGRPDYP-EALGHWLRDTLGVAPGAT-----VVDLGAGTGKFTRLLAP----SGASVVAVEPVDAMRAQLSARLPDVRALAGSAESMPLADASVDAVVCAQAFHWFANAAAMREIHRVLKPGGRLGLIWNVRDEATPWVAALTAIMTPYEG-DAPRFYQGDWKRVFPA------PGFGPLA---------LARFPYTHTGAPAQVIVDRVM-SVSFIASLPAVEQDAVRARLQAVIDTDPALRGR----DVVAFPYSTEAYCCTR 254          
BLAST of mRNA_H-elongata_contig7586.15271.1 vs. uniprot
Match: UPI000B45754F (uncharacterized methyltransferase-like C25B8.10 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45754F)

HSP 1 Score: 152 bits (383), Expect = 3.350e-39
Identity = 94/287 (32.75%), Postives = 155/287 (54.01%), Query Frame = 3
Query:  264 LHREAKDGFGGTKAVSYEKTRPGYPPHALRAIEAEICRSGY----GITKKKHLLVDLGCGTGKFTREILPFARSKGLSVVGIEPVEAMRKQFVNVLPSVEAKNGTGCNMPIPDCSARAVIAAQSFHWMSSLETLREVHRVLVPGGLFVLVWNTRDSSKPWVRALEDIIDSFYGEDVPRQHGGTWKRSFQNIEQQGESGRGSTEDKSRKFFDELTEQHFKHSQLLNMDELD---GLLRSISVVATRPEYEQSDASRRVQQLVETHPETRDE--LQKSGKVELFYDTEV 1097
            +H + K GF   K  +Y+++RP Y   A+  I A++   G           + +V+LG GTGKFT++++    ++ +  +  EP+E        + PSV  K     ++P+PD S R V+AAQ FHW +S ++L+E+ RVLVPGG FV+VWN +D  +PWV+ +EDI+  +YG D PR    TWK   +                  KF     ++HF  + +    + D   G   +ISV+A+ PE E+ D  RR+ Q++ +H +TR++  ++   K E+++  +V
Sbjct:    6 VHAKTKTGFINGK--NYDQSRPSYTEEAVSYI-ADLVTGGKIPGPSTGNVSYDIVELGAGTGKFTQKVMS-KLTQDVKYLATEPMEGFLDTLKQLCPSVSTKLCAASDLPLPDNSVRTVVAAQCFHWFASEDSLKEICRVLVPGGRFVMVWNNKDWDEPWVKDIEDILSGYYG-DTPRAINRTWKTVIE------------------KFSGLSCKEHFFQAGIDFQGDKDFVVGHFSTISVIASLPEDEKEDIQRRMYQVLNSHDQTREKDIIRIPFKTEIYHSVKV 269          
BLAST of mRNA_H-elongata_contig7586.15271.1 vs. uniprot
Match: V4P9N4_9CAUL (Methyltransf_11 domain-containing protein n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=V4P9N4_9CAUL)

HSP 1 Score: 151 bits (381), Expect = 4.030e-39
Identity = 93/276 (33.70%), Postives = 149/276 (53.99%), Query Frame = 3
Query:  297 TKAVSYEKTRPGYPPHALRAIEAEICRSGYGITKKKHLLVDLGCGTGKFTREILPFARSKGLSVVGIEPVEAMRKQFVNVLPSVEAKNGTGCNMPIPDCSARAVIAAQSFHWMSSLETLREVHRVLVPGGLFVLVWNTRDSSKPWVRALEDIIDSFYGEDVPRQHGGTWKRSFQNIEQQGESGRGSTEDKSRKFFDELTEQHFKHSQLLNMDELDGLLR---SISVVATRPEYEQSDASRRVQQLVETHPETRDELQKSGKVELFYDTEVYWCHRL 1115
            T A +Y   RPGYPP AL  +   +   G G  +K   +++LG GTGKF    +P  R  G +++ +EP++AMR Q     P VEA  G+   +P+PD S  AV+ AQ+FHW +++  LRE+ RVLVPGG+  L+WN RD + PWV  L  I D + G + PR   G W+R F                     F+ + E+H +++ +   D++  +++   S+S +A  P+ +Q++  ++V+ L+   PE    L K G +   Y+T ++   +L
Sbjct:   10 TGAAAYVGGRPGYPPEALDWLRDIV---GVGPGRK---VLELGAGTGKF----MPLLRQCGATLMAVEPIDAMRAQLTADFPEVEALAGSAEAIPLPDASVDAVVCAQAFHWFANVAALREIRRVLVPGGVLGLIWNGRDETVPWVAELSAITDEWEG-NTPRYVTGEWRRVF-----------------PAPGFEFIDERHARNAHVGTADQV--IVKRTLSVSFIAALPQQKQAEVEKQVRALIAHTPE----LSKGGDISFPYETSMFAYRKL 251          
BLAST of mRNA_H-elongata_contig7586.15271.1 vs. uniprot
Match: UPI001E54566F (methyltransferase domain-containing protein n=4 Tax=Chromobacterium group TaxID=90153 RepID=UPI001E54566F)

HSP 1 Score: 150 bits (380), Expect = 6.440e-39
Identity = 99/285 (34.74%), Postives = 145/285 (50.88%), Query Frame = 3
Query:  264 LHREAKDGFGGTKAVSYEKTRPGYPPHALRAIEAEICRSGYGITKKKHLLVDLGCGTGKFTREILPFARSKGLSVVGIEPVEAMRKQFVNVLPSVEAKNGTGCNMPIPDCSARAVIAAQSFHWMSSLETLREVHRVLVPGGLFVLVWNTRDSSKPWVRALEDIIDSFYGEDVPRQHGGTWKRSFQNIEQQGESGRGSTEDKSRKFFDELTEQHFKHSQLLNMDEL--DGLLRSISVVATRPEYEQSDASRRVQQLVETHPETRDELQKSGKVELFYDTEVYWCHR 1112
            LH +AK GF   +A +YE+ RP Y P     ++ E+     G+     +L DLG GTGKFTR +   A      V  +EPV+ MR Q    LP + A  GT   +P+PD S  A+  AQ+FHW ++ + LRE+HRVL PGG   L+WN RD S  WV  + +++  + G D PR H G W+R F+ +                ++F       F HS +   + +  D  L S+S +A  P+ E+   +  +++L+ THP+ R       +V   Y TE Y C R
Sbjct:    4 LHGQAKAGFA-KEAQAYERGRPEYAPELADWLKREL-----GLRLDSAVL-DLGAGTGKFTRLLATVAGE----VAAVEPVDEMRAQLQTRLPGLRALKGTAGEIPLPDASMDAIACAQAFHWFANEDALREIHRVLKPGGSLGLIWNVRDESCDWVARISELLAPYEG-DTPRFHSGAWRRPFEAV----------------RYFAAPALTMFSHSHVGPPERVIVDRFL-SVSFIAALPDDEKRLFAEALRRLIYTHPDLRGR----DEVAFPYRTEAYRCLR 255          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7586.15271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBT3_ECTSI1.390e-4956.04Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A2R6WAG2_MARPO2.640e-4234.13Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A852ZZP6_9ACTN4.450e-4035.92SAM-dependent methyltransferase n=1 Tax=Allostrept... [more]
F2KEZ6_PSEBN8.690e-4035.96Methyltransf_11 domain-containing protein n=1 Tax=... [more]
UPI001F0B79BD1.180e-3935.94class I SAM-dependent methyltransferase n=1 Tax=St... [more]
A0A4Q7S0A4_9BURK1.650e-3936.62Methyltransferase family protein n=3 Tax=Cupriavid... [more]
A0A3G8H8L0_9BURK3.220e-3937.81Class I SAM-dependent methyltransferase n=1 Tax=Cu... [more]
UPI000B45754F3.350e-3932.75uncharacterized methyltransferase-like C25B8.10 n=... [more]
V4P9N4_9CAUL4.030e-3933.70Methyltransf_11 domain-containing protein n=6 Tax=... [more]
UPI001E54566F6.440e-3934.74methyltransferase domain-containing protein n=4 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7586contigH-elongata_contig7586:1700..4846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.2
Seed ortholog evalue1.3e-41
Seed eggNOG ortholog2880.D8LBT3
KEGG koko:K08143,ko:K14300
KEGG TC1.I.1,2.A.1.1.13
KEGG Pathwayko03013,ko04973,map03013,map04973
KEGG ModuleM00427
GOsGO:0003674,GO:0003824,GO:0005975,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009636,GO:0009987,GO:0016740,GO:0016741,GO:0032259,GO:0042221,GO:0044237,GO:0044238,GO:0044262,GO:0046547,GO:0050896,GO:0051716,GO:0070887,GO:0071704,GO:0097237,GO:0098754,GO:1990748
EggNOG free text desc.trans-aconitate 3-methyltransferase activity
EggNOG OGsCOG0500@1,KOG3010@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons7
Model size1379
Cds size975
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.9051366-UTR-H-elongata_contig7586:1699..18421622931163.9051366-UTR-H-elongata_contig7586:1699..1842Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7586 1700..1842 +
1691679724.3553383-UTR-H-elongata_contig7586:1699..18421691679724.3553383-UTR-H-elongata_contig7586:1699..1842Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7586 1700..1842 +
1622931164.0523112-UTR-H-elongata_contig7586:4585..48461622931164.0523112-UTR-H-elongata_contig7586:4585..4846Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7586 4586..4846 +
1691679724.4337409-UTR-H-elongata_contig7586:4585..48461691679724.4337409-UTR-H-elongata_contig7586:4585..4846Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7586 4586..4846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.9250312-CDS-H-elongata_contig7586:1842..20241622931163.9250312-CDS-H-elongata_contig7586:1842..2024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7586 1843..2024 +
1691679724.3660488-CDS-H-elongata_contig7586:1842..20241691679724.3660488-CDS-H-elongata_contig7586:1842..2024Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7586 1843..2024 +
1622931163.9465923-CDS-H-elongata_contig7586:2197..23491622931163.9465923-CDS-H-elongata_contig7586:2197..2349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7586 2198..2349 +
1691679724.3775458-CDS-H-elongata_contig7586:2197..23491691679724.3775458-CDS-H-elongata_contig7586:2197..2349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7586 2198..2349 +
1622931163.9636567-CDS-H-elongata_contig7586:2548..26321622931163.9636567-CDS-H-elongata_contig7586:2548..2632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7586 2549..2632 +
1691679724.3877628-CDS-H-elongata_contig7586:2548..26321691679724.3877628-CDS-H-elongata_contig7586:2548..2632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7586 2549..2632 +
1622931163.9768608-CDS-H-elongata_contig7586:2994..31691622931163.9768608-CDS-H-elongata_contig7586:2994..3169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7586 2995..3169 +
1691679724.3980422-CDS-H-elongata_contig7586:2994..31691691679724.3980422-CDS-H-elongata_contig7586:2994..3169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7586 2995..3169 +
1622931163.994785-CDS-H-elongata_contig7586:3546..36451622931163.994785-CDS-H-elongata_contig7586:3546..3645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7586 3547..3645 +
1691679724.4092157-CDS-H-elongata_contig7586:3546..36451691679724.4092157-CDS-H-elongata_contig7586:3546..3645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7586 3547..3645 +
1622931164.0139966-CDS-H-elongata_contig7586:4005..41461622931164.0139966-CDS-H-elongata_contig7586:4005..4146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7586 4006..4146 +
1691679724.4175081-CDS-H-elongata_contig7586:4005..41461691679724.4175081-CDS-H-elongata_contig7586:4005..4146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7586 4006..4146 +
1622931164.0337546-CDS-H-elongata_contig7586:4443..45851622931164.0337546-CDS-H-elongata_contig7586:4443..4585Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7586 4444..4585 +
1691679724.4257681-CDS-H-elongata_contig7586:4443..45851691679724.4257681-CDS-H-elongata_contig7586:4443..4585Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7586 4444..4585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7586.15271.1prot_H-elongata_contig7586.15271.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7586 1843..4585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7586.15271.1

>prot_H-elongata_contig7586.15271.1 ID=prot_H-elongata_contig7586.15271.1|Name=mRNA_H-elongata_contig7586.15271.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=325bp
MSIIIAPPGVRTLAKIMSPLLPTVPKRPWRVPCAVALVGRLHREAKDGFG
GTKAVSYEKTRPGYPPHALRAIEAEICRSGYGITKKKHLLVDLGCGTGKF
TREILPFARSKGLSVVGIEPVEAMRKQFVNVLPSVEAKNGTGCNMPIPDC
SARAVIAAQSFHWMSSLETLREVHRVLVPGGLFVLVWNTRDSSKPWVRAL
EDIIDSFYGEDVPRQHGGTWKRSFQNIEQQGESGRGSTEDKSRKFFDELT
EQHFKHSQLLNMDELDGLLRSISVVATRPEYEQSDASRRVQQLVETHPET
RDELQKSGKVELFYDTEVYWCHRL*
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mRNA from alignment at H-elongata_contig7586:1700..4846+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7586.15271.1 ID=mRNA_H-elongata_contig7586.15271.1|Name=mRNA_H-elongata_contig7586.15271.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3147bp|location=Sequence derived from alignment at H-elongata_contig7586:1700..4846+ (Himanthalia elongata Himel1 dioecious)
AGTGCGATCAAAGCGGTCCGGCAAGGCAAGGGCAGTACAGTGCAGGTTTA AGATCGCCGAAACAAGACGACCACGACATTTCGTTTGGAACTCCACAGGA TCAATCCGGCAGCCGCGGCCTACTGGCATCACCGTTGCCATAGATGTCCA TAATTATAGCTCCCCCCGGTGTGCGCACTTTGGCGAAAATAATGTCGCCG CTGTTACCGACGGTGCCAAAGCGTCCGTGGCGCGTTCCCTGCGCGGTAGC GCTGGTTGGACGACTGCACAGGGAAGCGAAAGACGGTTTCGGCGGTACGA AGGCCGTTAGCTATGAGAAGACACGGTAAGGCTTGTTTCGTACTAACAGC GTTATTCGTCAGCGCCGTGCCTGATTCACGTATAGGGATCCCGAGTAGCG CAATCATCCACTGAACATCGATTGGTACAAACTTAAAACATGGTAACGCT CACACTGTACTATTTTCTCCCACGTCGGACCTCGCCGCAATGCTGAAGAC CTGGCTACCCTCCTCACGCCTTACGGGCGATCGAGGCCGAGATTTGTCGA AGTGGTTACGGCATCACAAAAAAAAAACATTTGCTGGTTGATCTCGGGTG CGGCACCGGCAAGTTCACCCGCGAAATCTTACCTTTCGCGCGTTCAAAAG GTGAGCGAGCGATCACGAATACTTGTCTTGGAAGTAATGTTTTATGTTAT CATAACACTCCTGAAAACTACACGTCAAATCGCCAACCGCACGCAGCCCT CTCTGGTTTCTTCGTTGTAACCTTCTCGCCGAAACGTAAGCCGCTTGAAT TCCAGCGGACCAATGATCTTCCTACCGATGTATTATCGTCTCCTCGCAGG ATTATCAGTTGTCGGAATCGAGCCTGTGGAAGCCATGCGTAAGCAATTTG TAAACGTGTTGCCCAGTGTCGAAGCCAAAAATGGTGAGAAGGAAAAAATG GGCACAAATAGGTAAAACGTGTACGCTCCAATGTGCAAAGTTCCTTGTGC AGCGGAGGCTTCCAATTTCACGTGCACTGCATAGGATAGCACGGACACAC AATGGGCGACCTCCACGAAACTGAAAAGTCACGCACTCCGGCGGCTGTGT TCGAGGTGTAGGTTCGTGAAACGGGACCCGTTTGCAGTCAATATTGCGGT GGGAGGCCGCTCACAGCCTTTAGAATGACAGTATTTTTCTATTTAAGGCT GCCCTCGCCGCGATCGTGATGGTGGTGCACTAAAGTCTACATATATTCGA CGGTCACATCGAACACGAGTTGATCTCCGCTTCATCGTCGAACAGGCACG GGATGTAACATGCCCATACCGGATTGCTCCGCTCGAGCGGTGATCGCTGC GCAAAGCTTCCACTGGATGTCCTCGCTAGAAACACTTCGCGAAGTACACC GCGTCTTAGTCCCTGGTGGCCTGTTTGTCTTAGTGTGGAATACCCGTGAC AGCTCAAAGCCCTGGGTTCGGTGAGATATGGTTGGCTTTCGTTGGTGGTA TGACAATTTATTTGTTATGGTACGATAACATCTTTCACCACCCATATACG TTTCTGAGTAGTGTTAGCGCCTGGTAAAGCTGAGACGAGTTCAACCTTGG CGCTACGGGTTACTCTGCGGACACGGGTAACGCAAAGAAAATTGTGCCTT AGGTGTTGGTTGCTCACCTCCGTTGAATAGATATATGCTTAGGGGCTCAT AAGCTTCTATATTAACATCTAAGTGTCATGCCGAAGTGTGTTTTCTCCTT CTTCTCCGCAGCATGGTAGTTCGTTGAAAAAAAACAACCTCGGCACTCGA ATAATTTCTCTAGGCACTAATTGCCATATATTTTGCAATACCGCCAGGGC TTTGGAAGACATCATTGATTCATTCTACGGTGAGGATGTCCCTAGACAGC ATGGAGGAACATGGAAACGATCGTTTCAAAACATCGAGCAGCAGGGGTAA GTGCTTTCTTCTAAGGGAAATATGTCACCAGCGTGCTATAATATTTCGAT ACGCACGAAGCTAATGGCGACAGAAACTACAGGCCGAACAAGGTAGATCA ACCTGTATTTCCCATTTGGAGACTGTAGAAATTAGTTGATGGACTTTCTC TATTAATAGGAGGGTGCAGGATTAAGCTGTTGTGGTGCGGATGCTCTTTC GCACCTCATCGGGAGTACGGAAAAGTTAGTTAAAAGAATGCTCGCGAGCG GAGCCCCGTCAAGCCTGCATGATACATTTGGCTTGGCACTGCTACGGCGT CGCTGCTGACCTGCTCTGCTTGCCACCATATTACGGTACATCACTGTCAC GCGCAGCGAGAGTGGGAGGGGGAGCACTGAAGATAAATCTCGAAAATTCT TCGACGAATTAACAGAACAACACTTCAAGCACTCGCAGTTGCTGAACATG GACGAGCTGGATGGCCTCTTGCGAAGCATCAGCGTCGTCGCAACAAGGTT TCTGTGTCTGCGTGCGATACGGTTCTTACTACGCTACTTGAGGATATTTC TTGCTGCGCTGAAAAACAAATTGCAAAGAAAACATGCTGATAAGATAATT CCCCGCTAAAAAGTGTACCCGGTACCGGTATATTTTATCACCAGAAACTT CCTCGCCTAGCGATATCAGCATATGGTGGACGGAGACACACGATGCTAGC TCCGGGATATCAGTCGCAGGTTTCCACATAAAGCTTGCGATCGCGCAATC CCCCTCCCCTTTCTCCCGACCGCCGCCTCTTTGCCTTACATTAGGCCGGA ATACGAACAATCGGATGCCTCACGACGTGTTCAGCAGCTGGTTGAGACGC ACCCAGAGACCCGTGATGAACTACAAAAGAGTGGGAAAGTAGAATTGTTC TATGATACTGAAGTTTACTGGTGCCATAGGCTGTAAAATGCGCCGCTCCA GTGTACGCTCACGTTGGTGCCTAGGTAACGTCGGATTTTGTAGTGTCAAG CGGAAAAGCGTGGGAGGGGTGAGAATCCGGTCCCTTGCTGAAGCGTTATG ATGCCACGAGTCAAGATGAAGCGGGAAACGAGTGACGTGGCAAACTGTTT TTTGTTTTTCTGGTCCAGTCCCAATGTGGCACTGGGGATAAAGGGTTGCG GCAAAGGGCGATAGATTGGAAGAAACTATGTATTTATGTTATGTACG
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Coding sequence (CDS) from alignment at H-elongata_contig7586:1700..4846+

>mRNA_H-elongata_contig7586.15271.1 ID=mRNA_H-elongata_contig7586.15271.1|Name=mRNA_H-elongata_contig7586.15271.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1950bp|location=Sequence derived from alignment at H-elongata_contig7586:1700..4846+ (Himanthalia elongata Himel1 dioecious)
ATGTCCATAATTATAGCTCCCCCCGGTGTGCGCACTTTGGCGAAAATAAT
GTCGCCGCTGTTACCGACGGTGCCAAAGCGTCCGTGGCGCGTTCCCTGCG
CGGTAGCGCTGGTTGGACGACTGCACAGGGAAGCGAAAGACGGTTTCGGC
GGTACGAAGGCCGTTAGCTATGAGAAGACACGATGTCCATAATTATAGCT
CCCCCCGGTGTGCGCACTTTGGCGAAAATAATGTCGCCGCTGTTACCGAC
GGTGCCAAAGCGTCCGTGGCGCGTTCCCTGCGCGGTAGCGCTGGTTGGAC
GACTGCACAGGGAAGCGAAAGACGGTTTCGGCGGTACGAAGGCCGTTAGC
TATGAGAAGACACGACCTGGCTACCCTCCTCACGCCTTACGGGCGATCGA
GGCCGAGATTTGTCGAAGTGGTTACGGCATCACAAAAAAAAAACATTTGC
TGGTTGATCTCGGGTGCGGCACCGGCAAGTTCACCCGCGAAATCTTACCT
TTCGCGCGTTCAAAAGACCTGGCTACCCTCCTCACGCCTTACGGGCGATC
GAGGCCGAGATTTGTCGAAGTGGTTACGGCATCACAAAAAAAAAACATTT
GCTGGTTGATCTCGGGTGCGGCACCGGCAAGTTCACCCGCGAAATCTTAC
CTTTCGCGCGTTCAAAAGGATTATCAGTTGTCGGAATCGAGCCTGTGGAA
GCCATGCGTAAGCAATTTGTAAACGTGTTGCCCAGTGTCGAAGCCAAAAA
TGGATTATCAGTTGTCGGAATCGAGCCTGTGGAAGCCATGCGTAAGCAAT
TTGTAAACGTGTTGCCCAGTGTCGAAGCCAAAAATGGCACGGGATGTAAC
ATGCCCATACCGGATTGCTCCGCTCGAGCGGTGATCGCTGCGCAAAGCTT
CCACTGGATGTCCTCGCTAGAAACACTTCGCGAAGTACACCGCGTCTTAG
TCCCTGGTGGCCTGTTTGTCTTAGTGTGGAATACCCGTGACAGCTCAAAG
CCCTGGGTTCGGCACGGGATGTAACATGCCCATACCGGATTGCTCCGCTC
GAGCGGTGATCGCTGCGCAAAGCTTCCACTGGATGTCCTCGCTAGAAACA
CTTCGCGAAGTACACCGCGTCTTAGTCCCTGGTGGCCTGTTTGTCTTAGT
GTGGAATACCCGTGACAGCTCAAAGCCCTGGGTTCGGGCTTTGGAAGACA
TCATTGATTCATTCTACGGTGAGGATGTCCCTAGACAGCATGGAGGAACA
TGGAAACGATCGTTTCAAAACATCGAGCAGCAGGGGGCTTTGGAAGACAT
CATTGATTCATTCTACGGTGAGGATGTCCCTAGACAGCATGGAGGAACAT
GGAAACGATCGTTTCAAAACATCGAGCAGCAGGGCGAGAGTGGGAGGGGG
AGCACTGAAGATAAATCTCGAAAATTCTTCGACGAATTAACAGAACAACA
CTTCAAGCACTCGCAGTTGCTGAACATGGACGAGCTGGATGGCCTCTTGC
GAAGCATCAGCGTCGTCGCAACAAGCGAGAGTGGGAGGGGGAGCACTGAA
GATAAATCTCGAAAATTCTTCGACGAATTAACAGAACAACACTTCAAGCA
CTCGCAGTTGCTGAACATGGACGAGCTGGATGGCCTCTTGCGAAGCATCA
GCGTCGTCGCAACAAGGCCGGAATACGAACAATCGGATGCCTCACGACGT
GTTCAGCAGCTGGTTGAGACGCACCCAGAGACCCGTGATGAACTACAAAA
GAGTGGGAAAGTAGAATTGTTCTATGATACTGAAGTTTACTGGTGCCATA
GGCTGTAAGCCGGAATACGAACAATCGGATGCCTCACGACGTGTTCAGCA
GCTGGTTGAGACGCACCCAGAGACCCGTGATGAACTACAAAAGAGTGGGA
AAGTAGAATTGTTCTATGATACTGAAGTTTACTGGTGCCATAGGCTGTAA
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