mRNA_H-elongata_contig7543.15229.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7543.15229.1
Unique NamemRNA_H-elongata_contig7543.15229.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7543.15229.1 vs. uniprot
Match: A0A8D1CTC0_PIG (KH type-2 domain-containing protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1CTC0_PIG)

HSP 1 Score: 256 bits (653), Expect = 6.330e-85
Identity = 130/136 (95.59%), Postives = 134/136 (98.53%), Query Frame = 1 
Query:    1 MAANISKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV 408
            MA N+SKKRKFVADGVF+ ELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRF+FPDDAVELYAERV+KRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV
Sbjct:    1 MATNMSKKRKFVADGVFFVELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFSFPDDAVELYAERVSKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV 136
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BLAST of mRNA_H-elongata_contig7543.15229.1 vs. uniprot
Match: D7G6B0_ECTSI (KH type-2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B0_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 6.180e-84
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 1 
Query:   13 ISKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV 408
            +SKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV
Sbjct:    1 MSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV 132
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BLAST of mRNA_H-elongata_contig7543.15229.1 vs. uniprot
Match: A0A7S2UUD3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUD3_9STRA)

HSP 1 Score: 249 bits (636), Expect = 4.110e-81
Identity = 128/136 (94.12%), Postives = 131/136 (96.32%), Query Frame = 1 
Query:    1 MAANISKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV 408
            MA+NISKKRKFVADGVFYAELN+LLT ELAE+GYAGVEVRVTPLRTEIII ATR QNVLGEKGQRIRELTSVVQKRFNF DDAVELYAERVA RGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV
Sbjct:    1 MASNISKKRKFVADGVFYAELNQLLTSELAEDGYAGVEVRVTPLRTEIIIRATRTQNVLGEKGQRIRELTSVVQKRFNFADDAVELYAERVANRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV 136
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BLAST of mRNA_H-elongata_contig7543.15229.1 vs. uniprot
Match: A0A6V2VE19_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2VE19_HETAK)

HSP 1 Score: 244 bits (623), Expect = 3.760e-79
Identity = 125/136 (91.91%), Postives = 130/136 (95.59%), Query Frame = 1 
Query:    1 MAANISKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV 408
            MA NISKKRKFVADGVFYAELNELLT+ELAE+GYAG+EVR TP+RTEIII ATR Q+VLGEKGQRIRELTSVVQKRFNF DDAVELYAERVA RGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV
Sbjct:    1 MAPNISKKRKFVADGVFYAELNELLTRELAEDGYAGLEVRTTPIRTEIIIRATRTQSVLGEKGQRIRELTSVVQKRFNFNDDAVELYAERVANRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV 136
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BLAST of mRNA_H-elongata_contig7543.15229.1 vs. uniprot
Match: A0A836CGW2_9STRA (Prokaryotic type K homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGW2_9STRA)

HSP 1 Score: 243 bits (621), Expect = 7.080e-79
Identity = 123/136 (90.44%), Postives = 131/136 (96.32%), Query Frame = 1 
Query:    1 MAANISKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV 408
            M  NISKKRKFVADGVFYAELNEL+ +ELAE+GY+GVEVRVTPLRTEIII AT+PQNVLGEKGQRIRELTSVVQKRF+FPD+AVELYAERVA RGLCAQTQAESLKYKL+GGLAVRRACYGVLRFIMESGAKGAEV
Sbjct:    1 MTTNISKKRKFVADGVFYAELNELMRRELAEDGYSGVEVRVTPLRTEIIIRATQPQNVLGEKGQRIRELTSVVQKRFSFPDNAVELYAERVAVRGLCAQTQAESLKYKLVGGLAVRRACYGVLRFIMESGAKGAEV 136
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BLAST of mRNA_H-elongata_contig7543.15229.1 vs. uniprot
Match: W7TS51_9STRA (40s ribosomal protein s3-3 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS51_9STRA)

HSP 1 Score: 239 bits (610), Expect = 5.970e-77
Identity = 119/136 (87.50%), Postives = 127/136 (93.38%), Query Frame = 1 
Query:    1 MAANISKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV 408
            M  NISKKRKF+ADGVFYAELNELLT+ELAE+GYAGVEVRV PLRTEIIISATR QNVLGEKGQRIRELT+V+QKRFNFPD  VEL+AE+VA RGLCAQ QAESLKYKLLGGLAVRRACYGVLRF+ME GAKGAEV
Sbjct:    1 MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIISATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFAEKVASRGLCAQAQAESLKYKLLGGLAVRRACYGVLRFVMEQGAKGAEV 136
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BLAST of mRNA_H-elongata_contig7543.15229.1 vs. uniprot
Match: F0YDG3_AURAN (KH type-2 domain-containing protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YDG3_AURAN)

HSP 1 Score: 235 bits (600), Expect = 1.330e-75
Identity = 120/134 (89.55%), Postives = 126/134 (94.03%), Query Frame = 1 
Query:    7 ANISKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV 408
            A ISKKRKFVADG+FYAELNELLT+ELAE+GYAGVEVRVTPLRTEIII ATR QNVLGEKGQRIRELTSVVQKRF+F D AVELYAERVA RGLCAQ QAESLKYKLLGGLAVRRACYGV+RF+MESGAKG EV
Sbjct:    2 ATISKKRKFVADGLFYAELNELLTRELAEDGYAGVEVRVTPLRTEIIIRATRTQNVLGEKGQRIRELTSVVQKRFHFQDGAVELYAERVANRGLCAQAQAESLKYKLLGGLAVRRACYGVVRFVMESGAKGVEV 135
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BLAST of mRNA_H-elongata_contig7543.15229.1 vs. uniprot
Match: C0HE21_MAIZE (KH type-2 domain-containing protein n=2 Tax=Zea mays TaxID=4577 RepID=C0HE21_MAIZE)

HSP 1 Score: 230 bits (587), Expect = 8.100e-75
Identity = 114/137 (83.21%), Postives = 127/137 (92.70%), Query Frame = 1 
Query:    1 MAANISKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVS 411
            MA  ISKK+KFV+DGVFYAELNE+LT+ELAE+GY+GVEVRVTP+RTEIII ATR QNVLGEKG+RIRELTSVVQKRFNFP++ VELYAE+V  RGLCA  QAESL+YKLLGGLAVRRACYGVLRF+MESGAKG EVS
Sbjct:    1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVS 137
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BLAST of mRNA_H-elongata_contig7543.15229.1 vs. uniprot
Match: A0A250XCE2_9CHLO (KH type-2 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XCE2_9CHLO)

HSP 1 Score: 232 bits (591), Expect = 3.420e-74
Identity = 116/136 (85.29%), Postives = 127/136 (93.38%), Query Frame = 1 
Query:    1 MAANISKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV 408
            MA  ISKKRKFVADGVFYAELNELLT+EL+E+GY+GVEVRVTP+RTEIII ATR QNVLGEKG+RIRELTSVVQKRFNFP D+VELYAE+V+ RGLCA  QAESL+YKLLGGLAVRRACYGVLRF+MESGAKG EV
Sbjct:    1 MATQISKKRKFVADGVFYAELNELLTRELSEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPPDSVELYAEKVSDRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEV 136
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BLAST of mRNA_H-elongata_contig7543.15229.1 vs. uniprot
Match: A0A383VTV7_TETOB (30S ribosomal protein S3, chloroplastic n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383VTV7_TETOB)

HSP 1 Score: 232 bits (591), Expect = 3.530e-74
Identity = 115/136 (84.56%), Postives = 126/136 (92.65%), Query Frame = 1 
Query:    1 MAANISKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQTQAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEV 408
            MA NISKKRKF+ADGVF+AELNELLT+ELAE+GY+GVEVRVTP+RTEIII ATR QNVLGEKG+RIRELTS VQKRFNFP + VELYAE+VA RGLCA  QAESL+YKLLGGLAVRRACYGVLRF+MESGAKG EV
Sbjct:    1 MATNISKKRKFIADGVFFAELNELLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSAVQKRFNFPPETVELYAEKVANRGLCAVAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEV 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7543.15229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8D1CTC0_PIG6.330e-8595.59KH type-2 domain-containing protein n=1 Tax=Sus sc... [more]
D7G6B0_ECTSI6.180e-8499.24KH type-2 domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2UUD3_9STRA4.110e-8194.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V2VE19_HETAK3.760e-7991.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CGW2_9STRA7.080e-7990.44Prokaryotic type K homology domain-containing prot... [more]
W7TS51_9STRA5.970e-7787.5040s ribosomal protein s3-3 n=3 Tax=Monodopsidaceae... [more]
F0YDG3_AURAN1.330e-7589.55KH type-2 domain-containing protein n=2 Tax=Pelago... [more]
C0HE21_MAIZE8.100e-7583.21KH type-2 domain-containing protein n=2 Tax=Zea ma... [more]
A0A250XCE2_9CHLO3.420e-7485.29KH type-2 domain-containing protein n=1 Tax=Chlamy... [more]
A0A383VTV7_TETOB3.530e-7484.5630S ribosomal protein S3, chloroplastic n=2 Tax=Sc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7543contigH-elongata_contig7543:8761..10305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.9
Seed ortholog evalue6.1e-66
Seed eggNOG ortholog2880.D7G6B0
Preferred nameRPS3
KEGG koko:K02985
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000054,GO:0000056,GO:0000184,GO:0000226,GO:0000302,GO:0000702,GO:0000956,GO:0001726,GO:0001817,GO:0001819,GO:0001932,GO:0001934,GO:0002181,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003723,GO:0003729,GO:0003735,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005783,GO:0005789,GO:0005791,GO:0005819,GO:0005829,GO:0005840,GO:0005844,GO:0005856,GO:0005886,GO:0005911,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006355,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006970,GO:0006974,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007059,GO:0008017,GO:0008092,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008284,GO:0008534,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009628,GO:0009636,GO:0009651,GO:0009719,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0016829,GO:0016835,GO:0017148,GO:0019104,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019866,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022407,GO:0022409,GO:0022607,GO:0022613,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030054,GO:0030155,GO:0030162,GO:0030425,GO:0030544,GO:0030684,GO:0030686,GO:0030688,GO:0030867,GO:0031072,GO:0031090,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031252,GO:0031253,GO:0031256,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031334,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031401,GO:0031503,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032069,GO:0032070,GO:0032071,GO:0032075,GO:0032077,GO:0032079,GO:0032268,GO:0032269,GO:0032270,GO:0032271,GO:0032273,GO:0032356,GO:0032357,GO:0032358,GO:0032587,GO:0032663,GO:0032743,GO:0032872,GO:0032874,GO:0032886,GO:0032944,GO:0032946,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0033674,GO:0033750,GO:0034097,GO:0034248,GO:0034249,GO:0034399,GO:0034599,GO:0034612,GO:0034613,GO:0034614,GO:0034641,GO:0034645,GO:0034655,GO:0035690,GO:0036477,GO:0042102,GO:0042104,GO:0042127,GO:0042129,GO:0042175,GO:0042221,GO:0042254,GO:0042325,GO:0042327,GO:0042493,GO:0042542,GO:0042769,GO:0042886,GO:0042981,GO:0042995,GO:0043005,GO:0043043,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043280,GO:0043281,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043506,GO:0043507,GO:0043523,GO:0043524,GO:0043549,GO:0043603,GO:0043604,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044390,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044430,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0045738,GO:0045739,GO:0045785,GO:0045859,GO:0045860,GO:0045862,GO:0045934,GO:0045935,GO:0045937,GO:0046006,GO:0046328,GO:0046330,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050657,GO:0050658,GO:0050670,GO:0050671,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050854,GO:0050856,GO:0050857,GO:0050862,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051018,GO:0051029,GO:0051052,GO:0051053,GO:0051054,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051251,GO:0051252,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051493,GO:0051495,GO:0051536,GO:0051540,GO:0051606,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0051879,GO:0052547,GO:0052548,GO:0055044,GO:0060255,GO:0060548,GO:0061481,GO:0065007,GO:0065009,GO:0070013,GO:0070181,GO:0070301,GO:0070302,GO:0070304,GO:0070507,GO:0070663,GO:0070665,GO:0070727,GO:0070848,GO:0070887,GO:0070925,GO:0070972,GO:0071159,GO:0071166,GO:0071236,GO:0071310,GO:0071345,GO:0071356,GO:0071363,GO:0071426,GO:0071428,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0072686,GO:0080090,GO:0080134,GO:0080135,GO:0090150,GO:0090304,GO:0090305,GO:0097064,GO:0097100,GO:0097159,GO:0097237,GO:0097447,GO:0097458,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098590,GO:0098827,GO:0120025,GO:0120038,GO:0140078,GO:0140097,GO:1900117,GO:1900119,GO:1901214,GO:1901215,GO:1901222,GO:1901224,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1901701,GO:1902229,GO:1902231,GO:1902531,GO:1902533,GO:1902544,GO:1902546,GO:1902903,GO:1902905,GO:1903037,GO:1903039,GO:1903320,GO:1903321,GO:1903506,GO:1905051,GO:1905053,GO:1990089,GO:1990090,GO:1990904,GO:2000112,GO:2000113,GO:2000116,GO:2001020,GO:2001021,GO:2001022,GO:2001056,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244,GO:2001270,GO:2001272
EggNOG free text desc.oxidized purine nucleobase lesion DNA N-glycosylase activity
EggNOG OGsCOG0092@1,KOG3181@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein S3, C-terminal
Ec32 orthologEc-10_001190.1
Exons4
Model size578
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7543.15229.1prot_H-elongata_contig7543.15229.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7543 8761..10198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.2162766-CDS-H-elongata_contig7543:8760..88291622931160.2162766-CDS-H-elongata_contig7543:8760..8829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 8761..8829 +
1691679723.026459-CDS-H-elongata_contig7543:8760..88291691679723.026459-CDS-H-elongata_contig7543:8760..8829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 8761..8829 +
1622931160.2334123-CDS-H-elongata_contig7543:9008..91661622931160.2334123-CDS-H-elongata_contig7543:9008..9166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 9009..9166 +
1691679723.0399694-CDS-H-elongata_contig7543:9008..91661691679723.0399694-CDS-H-elongata_contig7543:9008..9166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 9009..9166 +
1622931160.2550561-CDS-H-elongata_contig7543:9400..94761622931160.2550561-CDS-H-elongata_contig7543:9400..9476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 9401..9476 +
1691679723.0494437-CDS-H-elongata_contig7543:9400..94761691679723.0494437-CDS-H-elongata_contig7543:9400..9476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 9401..9476 +
1622931160.275628-CDS-H-elongata_contig7543:10030..101981622931160.275628-CDS-H-elongata_contig7543:10030..10198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 10031..10198 +
1691679723.061078-CDS-H-elongata_contig7543:10030..101981691679723.061078-CDS-H-elongata_contig7543:10030..10198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7543 10031..10198 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931160.2930362-UTR-H-elongata_contig7543:10198..103051622931160.2930362-UTR-H-elongata_contig7543:10198..10305Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7543 10199..10305 +
1691679723.0695696-UTR-H-elongata_contig7543:10198..103051691679723.0695696-UTR-H-elongata_contig7543:10198..10305Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7543 10199..10305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7543.15229.1

>prot_H-elongata_contig7543.15229.1 ID=prot_H-elongata_contig7543.15229.1|Name=mRNA_H-elongata_contig7543.15229.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
MAANISKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIII
SATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYAERVAKRGLCAQT
QAESLKYKLLGGLAVRRACYGVLRFIMESGAKGAEVSKNSSVGVFTICCH
PTLCHS*
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mRNA from alignment at H-elongata_contig7543:8761..10305+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7543.15229.1 ID=mRNA_H-elongata_contig7543.15229.1|Name=mRNA_H-elongata_contig7543.15229.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1545bp|location=Sequence derived from alignment at H-elongata_contig7543:8761..10305+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGCTAACATTTCGAAGAAGCGCAAGTTTGTGGCCGACGGTGTCTT
CTACGCTGAGCTCAATGAGGTAACGCATTGCTTCCACATCGCCGATTAAA
CGGGATCTGACGTATACTTCTAATGTCCATAGCGCAGCAGCCCAATTTTT
CCCAATATATCTCCCGCTTAGACCTTCAGAATGTTCCAACGACGATACGA
CCTTCGTTTCGTCCAATATGTATATATTACTCCGATATTGTTGACCAGCT
CCTTACCCAGGAACTGGCGGAGGAGGGATACGCCGGCGTGGAGGTGCGCG
TGACGCCCCTCCGAACTGAAATCATCATCAGCGCCACGCGCCCGCAAAAC
GTGCTAGGCGAGAAAGGCCAGCGAATCAGGGAGCTTACCTCCGTGGTACA
AAAGCGGTGCGTTCATCTCGACATACAAACGTCCATATTTGTTCGAAGAG
GCGATTGCCTCACGCACCAGATTCAGCCTGGGTGGGGAGAATGAGCGCCT
GGCGGGGCTGGGATGGCCGAAGGCCAAAATCTCATGACCTTCACACGACC
GAGTTGCCTTAGGTTTTGCGATTCTTGACTGTTCTTTTAATTTCTTCTCT
GTATCTTGAAGTGTTTAGGGTTATTGTCATGATGTGGCAGGTTTAACTTC
CCAGATGATGCTGTCGAGCTTTACGCGGAGCGAGTGGCTAAGCGCGGCCT
CTGTGCGCAAACCCAGGTGAGTTGTTGATTTTTTCTGGAGAACTTTAATT
AGTAGATTAAAAAAAGAAAAGTCCTGAAATGCAGTCTGTCATCATTGACC
CCAAGCATTCCATCGCTAAAACGCCTCTTAGTTATTGGCTCAATGATTTA
ATGCAACAAGGAATTAAAAAAAATCATACCGACTCCCTCACGGATGGCGA
AAGTAAGAAAGTAAGAATGGCCTTTTGAACTAGTTAGTGGTAACCTGTCA
AAAAAGTATTAATCCATCAAAGCCAAGCTGCTTTTTATCGCGCCGTGTGA
GGCATGAGTGGTCGATAAATCGTGTTATACTTTCTTACAAAAAGATATAC
ATCTCGATGCTTGACCAGCTTAATCACCCTAGAGGCATTTTCTAGATTGT
ACATGCCGCTAACTGAAAATGTCAAACAGATCAAAGCCAAGCTGCGTTTC
ATCGCGCCGTATTAGGTGTGGGTGGTCGAAAAATTATAATTTATTTTAAC
GCCTTCTAAGATGTGTACCTTTTGGTGTTTGACCCACTTAATCACCCTGG
ATACATCATCTAATATACAGGCCGAGTCTCTAAAGTACAAGCTCTTGGGC
GGCCTCGCCGTGCGCCGTGCTTGCTACGGTGTCCTTCGCTTTATTATGGA
GTCTGGGGCCAAAGGTGCTGAGGTAAGCAAAAATTCAAGCGTTGGGGTCT
TCACTATATGTTGCCACCCCACACTTTGCCACTCATGAAATTGAGCCATG
GTCGGATAGCGTTGTATTTTATTGATTACAGACTACTTATTTTTATTTTT
AAAAACTTGAACTCATTCCAACCCTCCGAACATCCAAATATTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig7543:8761..10305+

>mRNA_H-elongata_contig7543.15229.1 ID=mRNA_H-elongata_contig7543.15229.1|Name=mRNA_H-elongata_contig7543.15229.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig7543:8761..10305+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGCTAACATTTCGAAGAAGCGCAAGTTTGTGGCCGACGGTGTCTT
CTACGCTGAGCTCAATGAGATGGCGGCTAACATTTCGAAGAAGCGCAAGT
TTGTGGCCGACGGTGTCTTCTACGCTGAGCTCAATGAGCTCCTTACCCAG
GAACTGGCGGAGGAGGGATACGCCGGCGTGGAGGTGCGCGTGACGCCCCT
CCGAACTGAAATCATCATCAGCGCCACGCGCCCGCAAAACGTGCTAGGCG
AGAAAGGCCAGCGAATCAGGGAGCTTACCTCCGTGGTACAAAAGCGCTCC
TTACCCAGGAACTGGCGGAGGAGGGATACGCCGGCGTGGAGGTGCGCGTG
ACGCCCCTCCGAACTGAAATCATCATCAGCGCCACGCGCCCGCAAAACGT
GCTAGGCGAGAAAGGCCAGCGAATCAGGGAGCTTACCTCCGTGGTACAAA
AGCGGTTTAACTTCCCAGATGATGCTGTCGAGCTTTACGCGGAGCGAGTG
GCTAAGCGCGGCCTCTGTGCGCAAACCCAGGTTTAACTTCCCAGATGATG
CTGTCGAGCTTTACGCGGAGCGAGTGGCTAAGCGCGGCCTCTGTGCGCAA
ACCCAGGCCGAGTCTCTAAAGTACAAGCTCTTGGGCGGCCTCGCCGTGCG
CCGTGCTTGCTACGGTGTCCTTCGCTTTATTATGGAGTCTGGGGCCAAAG
GTGCTGAGGTAAGCAAAAATTCAAGCGTTGGGGTCTTCACTATATGTTGC
CACCCCACACTTTGCCACTCATGAGCCGAGTCTCTAAAGTACAAGCTCTT
GGGCGGCCTCGCCGTGCGCCGTGCTTGCTACGGTGTCCTTCGCTTTATTA
TGGAGTCTGGGGCCAAAGGTGCTGAGGTAAGCAAAAATTCAAGCGTTGGG
GTCTTCACTATATGTTGCCACCCCACACTTTGCCACTCATGA
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