mRNA_H-elongata_contig75378.15222.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75378.15222.1
Unique NamemRNA_H-elongata_contig75378.15222.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75378.15222.1 vs. uniprot
Match: D8LNR5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR5_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 6.850e-71
Identity = 115/160 (71.88%), Postives = 132/160 (82.50%), Query Frame = 1 
Query:    1 MADEDKKPRHKMGADELLEETHSAIGKIIHLLESNGLAAESVEHLTSLDKKPQPDLMGTLDFASRLGFTMPDVPHQQLVTMLFNAWDCLVYKTGHTRKLMYRKVVRLLEADNKTEADTLDRWKRERDKADRESAKANVAFVTMREIVKSFQNVSEDESVG 480
            MADED+KPRH++GADELLEET  A  KI++LLE NGLAAES+EHLTSL K    D MG+L+ A RLG +MPDVPH  LV +L +AWDC+VYKTGHTRK MYRKV RLLEADNKTE DTLDRWK ERDKA+RESAKANVA+VTMREI KSF+   ++E  G
Sbjct:    1 MADEDRKPRHRLGADELLEETQGASAKIVNLLEVNGLAAESIEHLTSLTKGG--DFMGSLNLARRLGLSMPDVPHNDLVVLLLDAWDCVVYKTGHTRKQMYRKV-RLLEADNKTEPDTLDRWKGERDKAERESAKANVAYVTMREIAKSFKEEPQEEGEG 157
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BLAST of mRNA_H-elongata_contig75378.15222.1 vs. uniprot
Match: A0A835ZPP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPP5_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.980e-27
Identity = 66/155 (42.58%), Postives = 95/155 (61.29%), Query Frame = 1 
Query:    1 MADE---DKKPRHKMGADELLEETHSAIGKIIHLLESNGLAAESVE---HLTSLDKKPQPDLMGTLDFASRLGFTMPDVPHQQLVTMLFNAWDCLVYKTGHTRKLMYRKVVRLLEADNKTEADTLDRWKRERDKADRESAKANVAFVTMREIVKS 447
            M+DE   +KKPR +M A+ELLEET  A+ K +  LESNGL A SVE   HLTS            L     LGFTMP + H   + ML + W+C+     ++R+  YRKV R+LEAD KT+ + L +W  +R + D+ESA  N++++ MR+I+++
Sbjct:    1 MSDEPAGEKKPRTRMNAEELLEETSQAMEKAVAFLESNGLHAASVENVRHLTSALAWSD-----ALHLTQSLGFTMPHIDHDAFIVMLLDTWECVAQMKLNSRRACYRKV-RVLEADQKTDPEVLAKWLADRARVDKESAATNLSYIKMRQILRA 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75378.15222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNR5_ECTSI6.850e-7171.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZPP5_9STRA1.980e-2742.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75378contigH-elongata_contig75378:1141..2772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006120.1
Exons3
Model size492
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75378.15222.1prot_H-elongata_contig75378.15222.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75378 1141..2772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.4396966-CDS-H-elongata_contig75378:1140..13111622931159.4396966-CDS-H-elongata_contig75378:1140..1311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75378 1141..1311 +
1691679722.6741416-CDS-H-elongata_contig75378:1140..13111691679722.6741416-CDS-H-elongata_contig75378:1140..1311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75378 1141..1311 +
1622931159.454285-CDS-H-elongata_contig75378:2083..22241622931159.454285-CDS-H-elongata_contig75378:2083..2224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75378 2084..2224 +
1691679722.6824796-CDS-H-elongata_contig75378:2083..22241691679722.6824796-CDS-H-elongata_contig75378:2083..2224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75378 2084..2224 +
1622931159.470148-CDS-H-elongata_contig75378:2592..27721622931159.470148-CDS-H-elongata_contig75378:2592..2772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75378 2593..2772 +
1691679722.69055-CDS-H-elongata_contig75378:2592..27721691679722.69055-CDS-H-elongata_contig75378:2592..2772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75378 2593..2772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75378.15222.1

>prot_H-elongata_contig75378.15222.1 ID=prot_H-elongata_contig75378.15222.1|Name=mRNA_H-elongata_contig75378.15222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
MADEDKKPRHKMGADELLEETHSAIGKIIHLLESNGLAAESVEHLTSLDK
KPQPDLMGTLDFASRLGFTMPDVPHQQLVTMLFNAWDCLVYKTGHTRKLM
YRKVVRLLEADNKTEADTLDRWKRERDKADRESAKANVAFVTMREIVKSF
QNVSEDESVGGKH*
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mRNA from alignment at H-elongata_contig75378:1141..2772+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75378.15222.1 ID=mRNA_H-elongata_contig75378.15222.1|Name=mRNA_H-elongata_contig75378.15222.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1632bp|location=Sequence derived from alignment at H-elongata_contig75378:1141..2772+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGATGAGGATAAGAAGCCTCGTCACAAGATGGGGGCTGACGAACT
TCTAGAGGAGACACATAGTGCTATCGGGAAGATCATCCACCTTCTCGAGT
CGAACGGGCTCGCTGCGGAATCTGTGGAGCACCTCACGAGCTTGGACAAG
AAACCCCAGCCTGACTTGATGGTTTGATACGCGCCATGGGGGCATATACA
GCATGCATTCGAATACTATACTGTAATATACTAGTATAAATAGTAATAAT
AAAGGAATATGTATATATGTATTGATTTTGATTGAATCCTCACATAAGCT
CTTTTCTAAAAAATCTAGAGCCCGTGGTCACAAGAGTGCTGGAGCCTAGG
AAGGTAAAAAAAACAAAAAACACACGAAAATTAGAAAAGGGAAAGGAGCA
CACAAGACCGAAAGAGGTACACCTATGCAGTAAACCAATTCAAACCCTTC
GAACATCCACACCTTCTTGGCGTAGCACTGTACTCGTTGAACTCTTGAGA
CACCGTTTGTTCGCGTATTATCTGGTCCTAGGCTTTCCCCCGCCTAGTAC
TGATACTATTATAGACTTTTATTGTAGTACTATACTATTATAGACTATTG
TAGTACTATACTAGACTATTATAGACTATTATTGTAGTACTAATATTATT
ATAGACTACTGTATCTTGATATTATAGACCATAGACCCCGTGAAATATTG
TGGAATACAGAAAGAAAAGCCCTTCGTTGGAGTATCATTAGTACGAGTAA
CGTTTAGTCATTCAACTATTTAAGTTAAAATACATGTTTATACTACTTAT
ACTAAGTTAATATACGCGAAGCCTTTATTAATATCAATATAAATATAAAT
AGACATGAGCACACCAAAATATCCTTTCAACTATTTAAGTTAATATACTG
AATAGCCAGCTTGAAGCCTTTATTTTGGCGTGCTCTTCTCTAGGGAACGC
TGGATTTTGCAAGTCGCTTAGGCTTCACCATGCCGGATGTGCCCCACCAG
CAGCTCGTGACGATGTTGTTCAATGCATGGGACTGCCTCGTCTACAAGAC
GGGACATACCCGGAAACTTATGTATCGAAAGGTGGTTGTCTCCCTCTCGA
AAGGTTTTCACCTACAGTATCACCTGTACCGTGTAGAGTCAGTCGTGTTT
TTGATGAGATAAGTCATTCAACGTTTCCTCTCATCCATAAGTAGTCCCTC
ATCCACAAGTAGTTAAAACAAAGAATGTGCGCTGTGCTCTAGTGGACACA
ACCGCCTCATCCATACCAAGCAATTCTTCTGTACAGTACATTATTTCGAC
TACTGAGGCCTCCCTCGTCAGACTTACTTGTAGTCTAATCACTATATATT
ATATATGTGATGCAGTATGTGACACTGTTTGCTCTCACTGTAACCACTAT
ATATTATATATGTGATGCAGTATGTGACACTGTTTGCTCTCACTGTAACC
AGGTAAGACTGCTGGAGGCGGACAATAAGACCGAGGCGGATACACTCGAC
CGCTGGAAACGAGAGCGAGACAAAGCCGACCGAGAAAGCGCTAAGGCTAA
CGTTGCATTCGTGACAATGCGCGAGATTGTCAAGTCATTCCAAAACGTTT
CGGAGGACGAGTCAGTAGGAGGAAAGCATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig75378:1141..2772+

>mRNA_H-elongata_contig75378.15222.1 ID=mRNA_H-elongata_contig75378.15222.1|Name=mRNA_H-elongata_contig75378.15222.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig75378:1141..2772+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGATGAGGATAAGAAGCCTCGTCACAAGATGGGGGCTGACGAACT
TCTAGAGGAGACACATAGTGCTATCGGGAAGATCATCCACCTTCTCGAGT
CGAACGGGCTCGCTGCGGAATCTGTGGAGCACCTCACGAGCTTGGACAAG
AAACCCCAGCCTGACTTGATGATGGCTGATGAGGATAAGAAGCCTCGTCA
CAAGATGGGGGCTGACGAACTTCTAGAGGAGACACATAGTGCTATCGGGA
AGATCATCCACCTTCTCGAGTCGAACGGGCTCGCTGCGGAATCTGTGGAG
CACCTCACGAGCTTGGACAAGAAACCCCAGCCTGACTTGATGGGAACGCT
GGATTTTGCAAGTCGCTTAGGCTTCACCATGCCGGATGTGCCCCACCAGC
AGCTCGTGACGATGTTGTTCAATGCATGGGACTGCCTCGTCTACAAGACG
GGACATACCCGGAAACTTATGTATCGAAAGGTGGGAACGCTGGATTTTGC
AAGTCGCTTAGGCTTCACCATGCCGGATGTGCCCCACCAGCAGCTCGTGA
CGATGTTGTTCAATGCATGGGACTGCCTCGTCTACAAGACGGGACATACC
CGGAAACTTATGTATCGAAAGGTGGTAAGACTGCTGGAGGCGGACAATAA
GACCGAGGCGGATACACTCGACCGCTGGAAACGAGAGCGAGACAAAGCCG
ACCGAGAAAGCGCTAAGGCTAACGTTGCATTCGTGACAATGCGCGAGATT
GTCAAGTCATTCCAAAACGTTTCGGAGGACGAGTCAGTAGGAGGAAAGCA
TTAGGTAAGACTGCTGGAGGCGGACAATAAGACCGAGGCGGATACACTCG
ACCGCTGGAAACGAGAGCGAGACAAAGCCGACCGAGAAAGCGCTAAGGCT
AACGTTGCATTCGTGACAATGCGCGAGATTGTCAAGTCATTCCAAAACGT
TTCGGAGGACGAGTCAGTAGGAGGAAAGCATTAG
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