mRNA_H-elongata_contig75364.15221.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig75364.15221.1
Unique NamemRNA_H-elongata_contig75364.15221.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig75364.15221.1 vs. uniprot
Match: D7FLK3_ECTSI (AAA ATPase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK3_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 9.800e-40
Identity = 85/119 (71.43%), Postives = 93/119 (78.15%), Query Frame = 3 
Query:    6 GMVVSRCATELREGTPRCSTVPDAAWYKCFVCRAQGYPDPAPKPPIDERWVGSCVAVLAPLVGPEARRILA-ARSRPAVLLHGPATAEGG-SLVEAAAERLGLHVRTVAMRAVLGGAAH 356
            GMVVS+  TELREG P CS VP+   Y+ FVCRA GYP P  KPP DER V + VA LAP+VGPEA R+L  ARSRPAVLLHGP  AEGG SLVEAAAERLG+HVRTVAMR+VLG A H
Sbjct:  405 GMVVSQRVTELREGGPICSPVPETLRYQRFVCRANGYPCPEAKPPFDERCVEAVVAALAPVVGPEAFRLLVVARSRPAVLLHGPGAAEGGGSLVEAAAERLGMHVRTVAMRSVLGSAPH 523
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BLAST of mRNA_H-elongata_contig75364.15221.1 vs. uniprot
Match: A0A6H5JDF2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDF2_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.620e-31
Identity = 84/168 (50.00%), Postives = 95/168 (56.55%), Query Frame = 3 
Query:    6 GMVVSRCATELREGTPRCSTVPDAAWYKCFVCRAQGYPDPAPKPPI-------------------------------------------------DERWVGSCVAVLAPLVGPEARRILA-ARSRPAVLLHGPATAEGG-SLVEAAAERLGLHVRTVAMRAVLGGAAH 356
            GMVVS+  TELREG P CS VP+ + Y+ FVCRA G+P PA KPP                                                  DER V + VA LAP+VGPEA R+L  ARSRPAVLLHGP  A+GG SLVEAAAERLG+HVRTVAMR+VLG A H
Sbjct:  345 GMVVSQRVTELREGGPVCSPVPEISRYQQFVCRANGFPCPATKPPFALLRMEMSKISKCNGAVRAYIKQCGWSAVAGRCLHARTGNVARHDNSSTDERCVEAVVAALAPVVGPEAFRLLVVARSRPAVLLHGPGAAQGGGSLVEAAAERLGMHVRTVAMRSVLGSAPH 512
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig75364.15221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLK3_ECTSI9.800e-4071.43AAA ATPase domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5JDF2_9PHAE1.620e-3150.00AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig75364contigH-elongata_contig75364:1670..2696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.8
Seed ortholog evalue7.9e-34
Seed eggNOG ortholog2880.D7FLK3
Preferred namePEX6
KEGG koko:K13339
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
GOsGO:0001302,GO:0001881,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007568,GO:0007569,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016042,GO:0016043,GO:0016054,GO:0016462,GO:0016558,GO:0016562,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017111,GO:0019395,GO:0019752,GO:0023051,GO:0030258,GO:0032502,GO:0032787,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0042579,GO:0042886,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044260,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0044743,GO:0045184,GO:0046395,GO:0046907,GO:0046982,GO:0046983,GO:0048869,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055114,GO:0065002,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:1901575
EggNOG free text desc.peroxisome organization
EggNOG OGsCOG0464@1,KOG0736@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPeroxisome biogenesis protein 6
Ec32 orthologEc-17_000870.1
Exons3
Model size366
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig75364.15221.1prot_H-elongata_contig75364.15221.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig75364 1678..2696 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.3491797-UTR-H-elongata_contig75364:1669..16771622931159.3491797-UTR-H-elongata_contig75364:1669..1677Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75364 1670..1677 +
1691679722.639351-UTR-H-elongata_contig75364:1669..16771691679722.639351-UTR-H-elongata_contig75364:1669..1677Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig75364 1670..1677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.3632753-CDS-H-elongata_contig75364:1677..18121622931159.3632753-CDS-H-elongata_contig75364:1677..1812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75364 1678..1812 +
1691679722.649376-CDS-H-elongata_contig75364:1677..18121691679722.649376-CDS-H-elongata_contig75364:1677..1812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75364 1678..1812 +
1622931159.3799593-CDS-H-elongata_contig75364:2199..23551622931159.3799593-CDS-H-elongata_contig75364:2199..2355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75364 2200..2355 +
1691679722.6576636-CDS-H-elongata_contig75364:2199..23551691679722.6576636-CDS-H-elongata_contig75364:2199..2355Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75364 2200..2355 +
1622931159.3974626-CDS-H-elongata_contig75364:2630..26961622931159.3974626-CDS-H-elongata_contig75364:2630..2696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75364 2631..2696 +
1691679722.6658275-CDS-H-elongata_contig75364:2630..26961691679722.6658275-CDS-H-elongata_contig75364:2630..2696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig75364 2631..2696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig75364.15221.1

>prot_H-elongata_contig75364.15221.1 ID=prot_H-elongata_contig75364.15221.1|Name=mRNA_H-elongata_contig75364.15221.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MVVSRCATELREGTPRCSTVPDAAWYKCFVCRAQGYPDPAPKPPIDERWV
GSCVAVLAPLVGPEARRILAARSRPAVLLHGPATAEGGSLVEAAAERLGL
HVRTVAMRAVLGGAAHGIV
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mRNA from alignment at H-elongata_contig75364:1670..2696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig75364.15221.1 ID=mRNA_H-elongata_contig75364.15221.1|Name=mRNA_H-elongata_contig75364.15221.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1027bp|location=Sequence derived from alignment at H-elongata_contig75364:1670..2696+ (Himanthalia elongata Himel1 dioecious)
CGGATGGGATGGTGGTGAGCCGATGCGCTACGGAGCTGAGGGAGGGAACC
CCAAGGTGCTCCACAGTCCCGGATGCGGCGTGGTACAAGTGTTTCGTGTG
CCGTGCACAGGGATACCCTGATCCTGCGCCCAAGCCACCGATCGTGAGTT
TCGAGTACATGATGGAAAATATATCAAGCTTCTCTCTGTTATGAGGTCAT
TAGTTGTCACTGCAAGCCTGAAAACGAGAAAAAATGCCCTTTTCTGTATT
TCTGACTGGTATGTGTCCTAGGCGACGCTCGCGTCTTACTCGCATTGAAG
CCCTGCTTGAATTGAGCATCCTGAAACAAGGATGCCAAGCGCGTAGGGCC
GTCACCCATAATTAAACAAGCCCCACGTGTATGTAGTCTTGCCACATCTC
GAAGTGGAAAGGTACAGTGTTCGAGCACACAACGTAGCGTAAAATATGAC
ACTCATATATCTCTCGACAGACACATATCCCCCCCCCCCCCTTCATATTG
TCATATAAATATTTTTTTTTTGCGCGCCAGGATGAGAGATGGGTGGGTTC
TTGTGTAGCGGTCCTTGCGCCTCTCGTTGGGCCGGAGGCGCGTCGCATTT
TGGCTGCGCGCTCACGGCCGGCGGTGCTGCTACACGGTCCGGCCACAGCA
GAGGGGGGTAGCCTCGTCGAGGCGGCAGCGGAGCGGGTGCGTCGTGGAGC
CAGCGAGAAGCAAGTATCCCACAGCACTTTTCTTTCCGTTAGGGTATTTT
AAGAGTTTAGATATCTCGATGTTAAACCCGTTTGCCTTGTAGTTTTCCCG
AGGCATGTACGCCTGCAGTAAACCCTCTACTGTTGTCCATACTGATGGGA
GATATATTTCACGCTCTTTTATGTCTCCCTCATGGATCGGCTCGCGGTTT
TCCCTTTTCATCCGGCCTCGTGTGCCCTCCGTCCGCGTTCAACCGCTGCT
CGAAAAAACAGCTAGGTCTTCACGTGCGGACCGTGGCAATGCGCGCCGTC
CTCGGAGGGGCGGCGCACGGCATCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig75364:1670..2696+

>mRNA_H-elongata_contig75364.15221.1 ID=mRNA_H-elongata_contig75364.15221.1|Name=mRNA_H-elongata_contig75364.15221.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig75364:1670..2696+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGTGAGCCGATGCGCTACGGAGCTGAGGGAGGGAACCCCAAGGTG
CTCCACAGTCCCGGATGCGGCGTGGTACAAGTGTTTCGTGTGCCGTGCAC
AGGGATACCCTGATCCTGCGCCCAAGCCACCGATCATGGTGGTGAGCCGA
TGCGCTACGGAGCTGAGGGAGGGAACCCCAAGGTGCTCCACAGTCCCGGA
TGCGGCGTGGTACAAGTGTTTCGTGTGCCGTGCACAGGGATACCCTGATC
CTGCGCCCAAGCCACCGATCGATGAGAGATGGGTGGGTTCTTGTGTAGCG
GTCCTTGCGCCTCTCGTTGGGCCGGAGGCGCGTCGCATTTTGGCTGCGCG
CTCACGGCCGGCGGTGCTGCTACACGGTCCGGCCACAGCAGAGGGGGGTA
GCCTCGTCGAGGCGGCAGCGGAGCGGGATGAGAGATGGGTGGGTTCTTGT
GTAGCGGTCCTTGCGCCTCTCGTTGGGCCGGAGGCGCGTCGCATTTTGGC
TGCGCGCTCACGGCCGGCGGTGCTGCTACACGGTCCGGCCACAGCAGAGG
GGGGTAGCCTCGTCGAGGCGGCAGCGGAGCGGCTAGGTCTTCACGTGCGG
ACCGTGGCAATGCGCGCCGTCCTCGGAGGGGCGGCGCACGGCATCGTGCT
AGGTCTTCACGTGCGGACCGTGGCAATGCGCGCCGTCCTCGGAGGGGCGG
CGCACGGCATCGTG
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