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Homology
BLAST of mRNA_H-elongata_contig75118.15191.1 vs. uniprot
Match: D8LGM2_ECTSI (20S proteasome alpha subunit G n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGM2_ECTSI) HSP 1 Score: 222 bits (565), Expect = 1.630e-62 Identity = 184/401 (45.89%), Postives = 216/401 (53.87%), Query Frame = 1
Query: 169 HIRGILPAGLPADGRALAQKAMEYCRSHRREYGEPMPGWVLADRLGEHIHATCVRWGSRAYPNELFVACWDGDGEEEDDDRVLACDTSRITNKKIAGRELVGARDELATARNGRDLGEEKQEGLRWVKKNGDRNGDDLTIAHG--------------------FNDEEEATVTAVSAAKDTGFQLYVVDPGGVARRYQAACSGRGSTRAREWLRRQSLLHASDA-ATSEDAGSKGERLRQQLARSGEPTREETDGGLLPGEGG--------GDDRGXXXXXXXXXXXXS-------------GMSIAGQKRCQPRRPLFSEMTCAEAARAMVEEARRFGDNSGKKPLGQEAGTGNSAGPGGD--VAGSAEVAWLSLASPRKESKEGNPCFVHYRSVEELFE 1239
HI GILPAGLPADGRALA KAMEYCRSHRREYGEP+PG +LA+RLGE IHA CVRWGSRAYPN LFVACW G+G A DT + + G G D G+ + + + + V+K G G + H D+ E V +D GFQLYVVDPGG RR++AAC+GRGS+RAR+WL R+ A+ A A ++A S G + S RE+ GG P GG GDDR XXXXXXXXXXXX G+ G++R QP FS+MTCAEAARAMV EARR AG AG GG VAG EVAWLS+ K G P FVH+RS E LFE
Sbjct: 100 HI-GILPAGLPADGRALAHKAMEYCRSHRREYGEPIPGRLLAERLGEFIHAACVRWGSRAYPNALFVACW-GEG---------APDTP--ASLRSEGGHRSGGSDANIVVTGGKSVSKPETKETAVVEKGG---GGVEPVLHDDRQPVXXXXXXXXXXXXXXXXXDDGEGLVMD----RDAGFQLYVVDPGGAVRRHRAACTGRGSSRARKWLHRRVTGAAAPAPAPGKEAVSGG---ASGVGPSASAEREKN-GGWSPEAGGRDDAAEEDGDDRSXXXXXXXXXXXXXXXXXXXXXXXXXXGVRQRGRRRQQPP---FSQMTCAEAARAMVREARRV-----------RAGEPGKAGGGGSEAVAGLPEVAWLSI------DKGGEPVFVHHRSTERLFE 456
BLAST of mRNA_H-elongata_contig75118.15191.1 vs. uniprot
Match: E1Z9U8_CHLVA (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z9U8_CHLVA) HSP 1 Score: 63.2 bits (152), Expect = 1.910e-7 Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 1
Query: 178 GILPAGLPADGRALAQKAMEYCRSHRREYGEPMPGWVLADRLGEHIHATCVRWGSRAYPNELFVACWDGDGEE 396
G+ AG+ ADGR++ +AM ++ YG+P+PG VLA+RLG ++H + W R Y +A + +G +
Sbjct: 75 GVATAGVAADGRSIVSRAMSEANQYKSFYGDPIPGHVLAERLGSYVHVFNLYWYVRPYGVSTLLATYGKEGPQ 147
BLAST of mRNA_H-elongata_contig75118.15191.1 vs. uniprot
Match: A0A8J2BHK6_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2BHK6_9DINO) HSP 1 Score: 58.2 bits (139), Expect = 9.390e-6 Identity = 26/90 (28.89%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 178 GILPAGLPADGRALAQKAMEYCRSHRREYGEPMPGWVLADRLGEHIHATCVRWGSRAYPNELFVACWDGDGEEEDDDRVLACDTSRITNK 447
G + GL +GR++ +A + +S+++ YGE +PG++LA+R+G ++H G R + + + +D + +E + +CDTS + K
Sbjct: 75 GSVVCGLVPEGRSVVGRARQEAQSYKKNYGEVIPGYLLAERVGYYMHLHTRYSGLRPKGSTILIGSYDAETKEPS---LFSCDTSGLVQK 161
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 230.3 |
| Seed ortholog evalue | 1.6e-57 |
| Seed eggNOG ortholog | 2880.D8LGM2 |
| Preferred name | PAG1 |
| KEGG ko | ko:K02727 |
| KEGG Pathway | ko03050,map03050 |
| KEGG Module | M00337,M00340 |
| GOs | GO:0000502,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0010498,GO:0010499,GO:0012505,GO:0016020,GO:0019538,GO:0019773,GO:0019941,GO:0030163,GO:0031090,GO:0031597,GO:0032991,GO:0034515,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046686,GO:0048046,GO:0050896,GO:0051603,GO:0071704,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369 |
| EggNOG free text desc. | The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH |
| EggNOG OGs | COG0638@1,KOG0184@2759 |
| EC | 3.4.25.1 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01002,ko03051 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Nucleophile aminohydrolases, N-terminal |
| Ec32 ortholog | Ec-10_002750.1 |
| Exons | 3 |
| Model size | 1706 |
| Cds size | 1245 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931156.3068798-UTR-H-elongata_contig75118:216..599 | 1622931156.3068798-UTR-H-elongata_contig75118:216..599 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig75118 217..599 - |
| 1691679721.4209418-UTR-H-elongata_contig75118:216..599 | 1691679721.4209418-UTR-H-elongata_contig75118:216..599 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig75118 217..599 - |
| 1622931156.3822749-UTR-H-elongata_contig75118:2905..2983 | 1622931156.3822749-UTR-H-elongata_contig75118:2905..2983 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig75118 2906..2983 - |
| 1691679721.4619792-UTR-H-elongata_contig75118:2905..2983 | 1691679721.4619792-UTR-H-elongata_contig75118:2905..2983 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig75118 2906..2983 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931156.323258-CDS-H-elongata_contig75118:599..1677 | 1622931156.323258-CDS-H-elongata_contig75118:599..1677 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig75118 600..1677 - |
| 1691679721.4315863-CDS-H-elongata_contig75118:599..1677 | 1691679721.4315863-CDS-H-elongata_contig75118:599..1677 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig75118 600..1677 - |
| 1622931156.3379304-CDS-H-elongata_contig75118:2352..2419 | 1622931156.3379304-CDS-H-elongata_contig75118:2352..2419 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig75118 2353..2419 - |
| 1691679721.4402018-CDS-H-elongata_contig75118:2352..2419 | 1691679721.4402018-CDS-H-elongata_contig75118:2352..2419 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig75118 2353..2419 - |
| 1622931156.3581376-CDS-H-elongata_contig75118:2805..2905 | 1622931156.3581376-CDS-H-elongata_contig75118:2805..2905 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig75118 2806..2905 - |
| 1691679721.451623-CDS-H-elongata_contig75118:2805..2905 | 1691679721.451623-CDS-H-elongata_contig75118:2805..2905 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig75118 2806..2905 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig75118.15191.1 >prot_H-elongata_contig75118.15191.1 ID=prot_H-elongata_contig75118.15191.1|Name=mRNA_H-elongata_contig75118.15191.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=415bp
MGHQCVCARALEERCGGTWDYRPDRPHRRRHIRGILPAGLPADGRALAQK AMEYCRSHRREYGEPMPGWVLADRLGEHIHATCVRWGSRAYPNELFVACW DGDGEEEDDDRVLACDTSRITNKKIAGRELVGARDELATARNGRDLGEEK QEGLRWVKKNGDRNGDDLTIAHGFNDEEEATVTAVSAAKDTGFQLYVVDP GGVARRYQAACSGRGSTRAREWLRRQSLLHASDAATSEDAGSKGERLRQQ LARSGEPTREETDGGLLPGEGGGDDRGGEGSRDSRGGDDSGMSIAGQKRC QPRRPLFSEMTCAEAARAMVEEARRFGDNSGKKPLGQEAGTGNSAGPGGD VAGSAEVAWLSLASPRKESKEGNPCFVHYRSVEELFEEAKSETRGLGEGG NGETGGSDSRGKEG* back to topmRNA from alignment at H-elongata_contig75118:217..2983- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig75118.15191.1 ID=mRNA_H-elongata_contig75118.15191.1|Name=mRNA_H-elongata_contig75118.15191.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2767bp|location=Sequence derived from alignment at H-elongata_contig75118:217..2983- (Himanthalia elongata Himel1 dioecious) ATTTATTAAATTGCACATAACCGCGCAATCCGGCCCTGTCACGCTAGTCA
TTCTAGGCTATACGCATTGATCCTTCCAATGGGGCATCAGTGTGTGTGTG
CGCGCGCGCTGGAAGAGCGCTGCGGCGGTACGTGGGACTACCGCCCCGAT
CGCCCCCACCGCCGTCGTCACATTAGAGGTGGGGGGAGGTTGGGGCGAGA
GGGACGGCGGGACTACGCAGTCTCTGCGGTGTGGATCTGCGTTGGCCGAG
TTTTTAGCGTTCCGTCGGTAGCGTTCCACTCCGTCCCGACCGATCTTCTT
ATTTATGCGGTTCGTTAATGCCGCGTTCGTCCTAGAGGAGCGACCTTAGC
AAAGGAACGCTAACCTAAAATCGTACGTTTTGTAACTAACGACAGGGTGG
TTGTTCATCCCTTCCGCGTTTTTACTGAATCTCATCGCATCTCACCTATA
TATCCAAAACTCGGCCATTATACACCGTGCGCACTTTGGTGTACTATAAT
AGTGTGGGATGTTTGTTTTCTTGACTTTTTATGGCGGCGTGCTCTTGATT
GCTGTAACGCAAAGGAATACTCCCCGCGGGATTGCCAGCGGACGGGAGGG
CGTTGGCTCAGAAAGCGATGGAGTACTGCAGGTGCGGCGGTATTTACGCC
CCCCCCCCCCCCCCCCCCCCCCGCCCTCCGGGGGGGGAGCTTTTTTTTTT
TTTTTTTTTTTTATTTTTCTTTTTTTTTNNNNNNNNNNGGGGGGGGTTTG
GCTCCAAAAACCATGGAGTACTGCGGGTGCGGCGGTTTTTACCCCCCCCC
CCCCCCCCTGCGGTTCTGCGGAGATACATTTTATTCGATTTTTCGTTTAA
CTCATTTCCTTGCGCTTTTTGTTGTTGTTGTTGCCAAAACACACCCTGAC
TCCAATTCCTTGACTTCGTTGACTTTAGTCGCTGAAATATCACCCAAGGG
AAGGGGAGGGGCGTTGAAATTAACATTCTACCGCCGGTGAAAAGGAGAAT
TTGAGGAGGGACGACCGCAACGCCGCCACTACGACCACCAGAAAAATATT
GCCGCCTTACCCTACCTCGATATTTTCCCCGAGGTACCACGATATTCTTG
ACCACCGTGTCCCACTTTTGTCCTTCTCGCCGTCATTGCCAAACAAGACG
CGCCAGCTAGCAGGTCTTCGCTACCTCTTCAGCGGCTCGCTCCCGTTCGC
CCTGTCGACGGCTTCCCTACATATTATTTCCTTCGCCCCTCTAAAAAGAG
GTCCCCTACGAACGCTCGCTTACTCAGAAGTCGCCCTCGTAATATACGTG
ACGCAGGTCACACCGCAGGGAATATGGAGAGCCAATGCCGGGTTGGGTGC
TTGCGGATCGTCTCGGAGAGCATATCCACGCAACGTGCGTTCGCTGGGGG
TCTCGGGCCTACCCGAACGAGCTGTTCGTCGCCTGCTGGGATGGTGACGG
TGAAGAGGAAGATGACGATCGGGTCTTGGCGTGTGACACTAGCCGCATAA
CTAACAAAAAAATTGCGGGACGCGAGTTGGTGGGGGCACGAGATGAGCTC
GCCACGGCGCGGAATGGGCGAGATCTCGGTGAAGAGAAGCAGGAAGGGTT
GAGATGGGTTAAGAAGAATGGGGACAGGAACGGGGATGACTTAACGATTG
CCCACGGGTTCAACGATGAAGAGGAAGCGACGGTCACGGCGGTGTCGGCG
GCCAAAGATACAGGGTTCCAGCTGTACGTGGTAGACCCTGGCGGGGTGGC
ACGGCGCTACCAGGCTGCGTGTTCCGGAAGGGGTAGCACCCGCGCCCGTG
AGTGGCTCCGCCGCCAGTCTCTTCTTCACGCGAGTGACGCGGCGACTAGC
GAAGACGCTGGGAGTAAAGGAGAACGGCTTCGACAACAACTTGCGCGTTC
TGGGGAGCCGACTAGAGAGGAGACGGACGGAGGATTGTTGCCAGGAGAAG
GCGGTGGTGATGATAGGGGAGGGGAAGGGTCGAGAGATAGTAGAGGTGGT
GATGACTCGGGGATGTCGATCGCAGGGCAGAAACGCTGCCAACCTCGCCG
TCCGCTTTTTTCGGAGATGACCTGCGCCGAAGCGGCGCGGGCGATGGTCG
AAGAGGCGAGACGCTTTGGCGATAATTCAGGGAAGAAACCTCTAGGCCAG
GAGGCGGGGACGGGTAATTCGGCAGGGCCGGGCGGGGACGTTGCGGGGTC
GGCAGAGGTTGCTTGGCTTTCATTGGCGTCGCCGAGAAAGGAAAGCAAGG
AAGGGAATCCCTGCTTCGTCCATTACCGCTCCGTTGAGGAATTGTTTGAG
GAAGCAAAGTCGGAAACGCGGGGGTTGGGTGAGGGGGGGAACGGGGAAAC
CGGCGGCAGCGATAGCCGGGGAAAGGAAGGGTAGATGTTAAAAGGAGGGT
GATCTGAAAGGTTCTTGCCGTCATGGGAGTAGCTCGGGGTGTTCTCCCCT
GCATCGTTTATGTAAATAAAGAAAGAGAGAAAGAGATAGAGAGAGGAATA
TATAACGCAATCCACGCGTAGCAACAACGTGTTCTCTTGGATTAGGCTCT
AGATGACCCGTATTTTCCTCGTTTCCGGCCCCGAATCGATCGTGTCTTTC
CTCGAATCTTATACTTTACGAAGAAGTTGTCTTTGTTATTACCTACCAGT
GTACTGCATGTTGAGCGTTAAGAGCCCCGTTGTTATTACGATAGAGGACG
TACAGCCTCGATTTCCTAGAGAGTGGAAATAAATAAACAACCAATTCTCA
AGGACAAACAAGACAGG back to topCoding sequence (CDS) from alignment at H-elongata_contig75118:217..2983- >mRNA_H-elongata_contig75118.15191.1 ID=mRNA_H-elongata_contig75118.15191.1|Name=mRNA_H-elongata_contig75118.15191.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2490bp|location=Sequence derived from alignment at H-elongata_contig75118:217..2983- (Himanthalia elongata Himel1 dioecious) ATGGGGCATCAGTGTGTGTGTGCGCGCGCGCTGGAAGAGCGCTGCGGCGG TACGTGGGACTACCGCCCCGATCGCCCCCACCGCCGTCGTCACATTAGAG ATGGGGCATCAGTGTGTGTGTGCGCGCGCGCTGGAAGAGCGCTGCGGCGG TACGTGGGACTACCGCCCCGATCGCCCCCACCGCCGTCGTCACATTAGAG GAATACTCCCCGCGGGATTGCCAGCGGACGGGAGGGCGTTGGCTCAGAAA GCGATGGAGTACTGCAGGAATACTCCCCGCGGGATTGCCAGCGGACGGGA GGGCGTTGGCTCAGAAAGCGATGGAGTACTGCAGGTCACACCGCAGGGAA TATGGAGAGCCAATGCCGGGTTGGGTGCTTGCGGATCGTCTCGGAGAGCA TATCCACGCAACGTGCGTTCGCTGGGGGTCTCGGGCCTACCCGAACGAGC TGTTCGTCGCCTGCTGGGATGGTGACGGTGAAGAGGAAGATGACGATCGG GTCTTGGCGTGTGACACTAGCCGCATAACTAACAAAAAAATTGCGGGACG CGAGTTGGTGGGGGCACGAGATGAGCTCGCCACGGCGCGGAATGGGCGAG ATCTCGGTGAAGAGAAGCAGGAAGGGTTGAGATGGGTTAAGAAGAATGGG GACAGGAACGGGGATGACTTAACGATTGCCCACGGGTTCAACGATGAAGA GGAAGCGACGGTCACGGCGGTGTCGGCGGCCAAAGATACAGGGTTCCAGC TGTACGTGGTAGACCCTGGCGGGGTGGCACGGCGCTACCAGGCTGCGTGT TCCGGAAGGGGTAGCACCCGCGCCCGTGAGTGGCTCCGCCGCCAGTCTCT TCTTCACGCGAGTGACGCGGCGACTAGCGAAGACGCTGGGAGTAAAGGAG AACGGCTTCGACAACAACTTGCGCGTTCTGGGGAGCCGACTAGAGAGGAG ACGGACGGAGGATTGTTGCCAGGAGAAGGCGGTGGTGATGATAGGGGAGG GGAAGGGTCGAGAGATAGTAGAGGTGGTGATGACTCGGGGATGTCGATCG CAGGGCAGAAACGCTGCCAACCTCGCCGTCCGCTTTTTTCGGAGATGACC TGCGCCGAAGCGGCGCGGGCGATGGTCGAAGAGGCGAGACGCTTTGGCGA TAATTCAGGGAAGAAACCTCTAGGCCAGGAGGCGGGGACGGGTAATTCGG CAGGGCCGGGCGGGGACGTTGCGGGGTCGGCAGAGGTTGCTTGGCTTTCA TTGGCGTCGCCGAGAAAGGAAAGCAAGGAAGGGAATCCCTGCTTCGTCCA TTACCGCTCCGTTGAGGAATTGTTTGAGGAAGCAAAGTCGGAAACGCGGG GGTTGGGTGAGGGGGGGAACGGGGAAACCGGCGGCAGCGATAGCCGGGGA AAGGAAGGGTAGGTCACACCGCAGGGAATATGGAGAGCCAATGCCGGGTT GGGTGCTTGCGGATCGTCTCGGAGAGCATATCCACGCAACGTGCGTTCGC TGGGGGTCTCGGGCCTACCCGAACGAGCTGTTCGTCGCCTGCTGGGATGG TGACGGTGAAGAGGAAGATGACGATCGGGTCTTGGCGTGTGACACTAGCC GCATAACTAACAAAAAAATTGCGGGACGCGAGTTGGTGGGGGCACGAGAT GAGCTCGCCACGGCGCGGAATGGGCGAGATCTCGGTGAAGAGAAGCAGGA AGGGTTGAGATGGGTTAAGAAGAATGGGGACAGGAACGGGGATGACTTAA CGATTGCCCACGGGTTCAACGATGAAGAGGAAGCGACGGTCACGGCGGTG TCGGCGGCCAAAGATACAGGGTTCCAGCTGTACGTGGTAGACCCTGGCGG GGTGGCACGGCGCTACCAGGCTGCGTGTTCCGGAAGGGGTAGCACCCGCG CCCGTGAGTGGCTCCGCCGCCAGTCTCTTCTTCACGCGAGTGACGCGGCG ACTAGCGAAGACGCTGGGAGTAAAGGAGAACGGCTTCGACAACAACTTGC GCGTTCTGGGGAGCCGACTAGAGAGGAGACGGACGGAGGATTGTTGCCAG GAGAAGGCGGTGGTGATGATAGGGGAGGGGAAGGGTCGAGAGATAGTAGA GGTGGTGATGACTCGGGGATGTCGATCGCAGGGCAGAAACGCTGCCAACC TCGCCGTCCGCTTTTTTCGGAGATGACCTGCGCCGAAGCGGCGCGGGCGA TGGTCGAAGAGGCGAGACGCTTTGGCGATAATTCAGGGAAGAAACCTCTA GGCCAGGAGGCGGGGACGGGTAATTCGGCAGGGCCGGGCGGGGACGTTGC GGGGTCGGCAGAGGTTGCTTGGCTTTCATTGGCGTCGCCGAGAAAGGAAA GCAAGGAAGGGAATCCCTGCTTCGTCCATTACCGCTCCGTTGAGGAATTG TTTGAGGAAGCAAAGTCGGAAACGCGGGGGTTGGGTGAGGGGGGGAACGG GGAAACCGGCGGCAGCGATAGCCGGGGAAAGGAAGGGTAG back to top
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