mRNA_H-elongata_contig750.15181.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig750.15181.1 vs. uniprot
Match: D7FYS5_ECTSI (THUMP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS5_ECTSI) HSP 1 Score: 438 bits (1126), Expect = 1.860e-142 Identity = 268/523 (51.24%), Postives = 330/523 (63.10%), Query Frame = 2
Query: 548 TGAALESQPRS-EIALTRLESLVYESTMWPAAIDVWRRFRTAKATATVTDSDGS------------AVGRPGPTRIEQRYGASKNIHP-GVMNLKYRVSVIRDGKHPFRSLEASPRLGGAVYDANPTWTVDLTEYDVEVVAFILERSVAVGLFLGNDRAKHSSNGRVPKEDKA-LEIGKRLSSLRPSTAYLMLKLANPAPGDVVLDCMCGAGTIPFLGAGWFTEVFFLGGEVDASAIDHLKQNRQLSRRLISPPGVTAMGVSSADACAWDAQSLPLQNGTVDAVVVDMPFGVSCGTPRLIGKLYPLALAEMARVLRPGSGRAVLLVAQPYLLGLPEIRRERRKKSNSAAATAKGRRRGVARGQKDSGDASRGQQRPRE----EQHLDTDSAAGGGRNPDERSGSCAELEGSGGCVSHGEEQTGGDEGFRAQAANIVRGEVVTPNSEKG----PRSGSLKS----------LWRVRERHAVNVGGLISWLVILDRTDEPPPRPCSDRRRRWVGLHGYCKDRKEG 2017
+GAA P + E AL RLESLV +S +WPAAI+VW+RF+ ++A +T + G+ A+GRPG ++ A + + V LK+R SV+RDG+HPF S+EASPRLGGAV+ N WTVDL YDVEVVAFILER VAVGL L DR K S+GRVPKEDK +E GKR+SSLRPSTAYLML++A P GDV++DCMCG GTIPFLGAGWF V +GGE+D SAIDHL++N Q RR SP G ++ ACAWDAQSLPL++G+VDA+VVDMPFG SCGTPR +LYPL +AEMARVLRP SGRAVLLV QP+LLG+P +RR+ +K AK R RG D G+ G+ E E+ ++ S G N G ++ + G HG E E ++ GE+ +P EKG P S +S LWR+R RHAVNVGGLIS L++LDRTDEPP P DRR R VG YCK EG
Sbjct: 38 SGAAPAEGPNTTEAALARLESLVTDSPLWPAAINVWKRFKVSQARSTQAAAAGAGGVSGTEPRDCPALGRPG----QEMEDAPRPVGDIDVAGLKFRASVVRDGQHPFSSVEASPRLGGAVWSVNRGWTVDLKGYDVEVVAFILERGVAVGLALDGDRTKRCSHGRVPKEDKGFIETGKRMSSLRPSTAYLMLRMAEPVVGDVIVDCMCGVGTIPFLGAGWFPGVCLVGGEIDDSAIDHLRRNAQSLRR--SPAGRAG---AAGGACAWDAQSLPLRDGSVDAMVVDMPFGQSCGTPRQNARLYPLVMAEMARVLRP-SGRAVLLVTQPHLLGVPGLRRDNQKDRKKLRKMAKQASRVGDRGDHDLGEGIEGRAASEETGSGERCGESTSRHAGNINSSSDGGMSKDIADTAG---HGVENVTKQEKEDVDPSDS--GELASPAPEKGTNDFPLCDSERSVCVAAAAPGALWRIRARHAVNVGGLISHLLLLDRTDEPPRSPRVDRRHRVVGAKAYCKRHHEG 545
BLAST of mRNA_H-elongata_contig750.15181.1 vs. uniprot
Match: A0A6H5KWC7_9PHAE (UPF0020 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWC7_9PHAE) HSP 1 Score: 237 bits (605), Expect = 1.190e-68 Identity = 152/313 (48.56%), Postives = 189/313 (60.38%), Query Frame = 2
Query: 1124 MCGAGTIPFLGAGWFTEVFFLGGEVDASAIDHLKQNRQLSRRLISPPGVTAMGVSSADACAWDAQSLPLQNGTVDAVVVDMPFGVSCGTPRLIGKLYPLALAEMARVLRPGSGRAVLLVAQPYLLGLPEIRRERRKKSNSAAATAKGRRRGVARGQKDSGDASRGQQRPRE----EQHLDTDSAAGGGRNPDERSGSCAELEGSGGCVSHG---------EEQTGGDEGFRAQAANIVRGEVVTP--NSEKGPRSGSLKSLWRVRERHAVNVGGLISWLVILDRTDEPPPRPCSDRRRRWVGLHGYCKDRKEG 2017
MCG GTIP LGAGWF V +GGE+D SAIDHL++N Q RR SP G ++ ACAWDAQSLPL++G+VDA+VVDMPFG SCGTPR +LYPL +AEMARVLRP SGRAVLLV QP+LLG+ +RR+ +K A R RG D G G+ P E E++ ++ S G N G ++ G+ + HG E+ D G RA A +G+ P +SE+G + + +LWR+R RHAVNVGGLIS L++LDRTDEPP P DRR R VG YCK EG
Sbjct: 1 MCGVGTIPLLGAGWFPGVCLVGGEIDDSAIDHLRRNAQSLRR--SPAGRAG---AAGGACAWDAQSLPLRDGSVDAMVVDMPFGQSCGTPRQNARLYPLVMAEMARVLRP-SGRAVLLVTQPHLLGVSGLRRDNQKDRKKLRKMATQESRVGDRGHHDLGGVIEGRAAPEEIGLGERYGESTSQQAGSINSSSDGGMSKDVAGT---MGHGVENVTKREKEDVDPSDSGDRASPAP-EKGKHGCPLGDSERGGAAAAPGALWRIRARHAVNVGGLISHLLLLDRTDEPPRSPRVDRRYRVVGAKAYCKRHHEG 303
BLAST of mRNA_H-elongata_contig750.15181.1 vs. uniprot
Match: A0A6H5KUR7_9PHAE (THUMP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR7_9PHAE) HSP 1 Score: 226 bits (575), Expect = 7.270e-64 Identity = 149/339 (43.95%), Postives = 194/339 (57.23%), Query Frame = 2
Query: 170 NIFDHSRDRYLIICLGGLQPFIKKLVDRHVETCGWKVDVQIIPEVQQGCPGADTHVKGVHNGQAGC---GKLLVAT-----DAPPAVLNGIRCVQAVYALVAYAVSLDIVIHEALGADDALPSDSPGSAGLRENTGAALESQPRS-EIALTRLESLVYESTMWPAAIDVWRRFRTAKATATVTDSDGS------------AVGRPGPTRIEQRYGASKNIHPGVMNLKYRVSVIRDGKHPFRSLEASPRLGGAVYDANPTWTVDLTEYDVEVVAFILERSVAVGLFLGNDRAKHSSNGRVPKEDKA-LEIGKRLSSLRPSTAYLMLKLANPAPGDVVLD 1120
++ +SR YL++CLGGLQ +K V RH+E + DV + E T + + G G L A A + +R V ++ALVA++ SLDI A+ S A +GAA P + E AL RLESLV +S +WPAAI+VW+ F+ ++A +T + G+ A+G PG E A +I V +K+R SV+RDG+HPF S+EASPRLGGAV+ N WTVDL YDVEVVAFILER VAVGL L DR K S+GRVPKEDK +E GKR+SSLRPSTAYLML++A P GDV++D
Sbjct: 12 SVLGNSRSWYLLLCLGGLQTVVKAEVKRHLEASRQEGDVHVFEEDFGATHYVMTKTRSARPSRRGSLRPGGLREAAGGDRCSARDPEIASLRPVTGLFALVAHSASLDITRIPRQAAESTSTSSPQKIA-----SGAAPAEDPNTTEAALARLESLVTDSPLWPAAINVWKSFKVSQARSTEAAAAGAGDVSGTEPRDCPALGEPGQEE-EDAPRAVGDID--VAGIKFRASVVRDGQHPFSSVEASPRLGGAVWSVNRGWTVDLKGYDVEVVAFILERGVAVGLALDGDRTKRCSHGRVPKEDKGFIETGKRMSSLRPSTAYLMLRMAEPVVGDVIVD 342
BLAST of mRNA_H-elongata_contig750.15181.1 vs. uniprot
Match: W4FQN6_9STRA (UPF0020 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQN6_9STRA) HSP 1 Score: 189 bits (479), Expect = 2.360e-49 Identity = 117/304 (38.49%), Postives = 158/304 (51.97%), Query Frame = 2
Query: 590 LTRLESLVYESTMWPAAIDVWRRFRTAKATATVTDSDGSAVGRPGPTRIEQRYGASKNIHPGVMNLKYRVSVIRDGKHPFRSLEASPRLGGAVYDANPTWTVDLTEYDVEVVAFILERSVAVGLFLG-NDRAKHSSNGRVPKEDKALEIGKRLSSLRPSTAYLMLKLANPAPGDVVLDCMCGAGTIPFLGAGWFTEVFFLGGEVDASAIDHLKQNRQLSRRLISPPGVTAMGVSSADACAWDAQSLPLQNGTVDAVVVDMPFGVSCGTPRLIGKLYPLALAEMARVLRPGSGRAVLLVAQPYLL 1498
L ++ LV ++ W AA+ +W+ + +SK P L++R S +RDGKH + S + +G AV + +P WTV L+++DVEVVA ++ V G+ L N + + GR+ E + L + +S+LRPSTAYLML+LA PGDVVLDCMCG GT+P W VF LGG+V A+D N G A C W A++LPL+ VD ++VDMPFG+ CG KLYP A+AEMARVLR G AVLLV LL
Sbjct: 96 LNQIGMLVERASTWSAALALWK-----------------------DVHHDPXXXSSKEDAPSSA-LRFRGSCVRDGKHAYSSEAIAGAVGTAVLNLHPKWTVSLSDFDVEVVALVMHSHVVCGISLAENSKTINYRGGRLAPEARHLSSLQYISTLRPSTAYLMLQLAKCQPGDVVLDCMCGVGTLPACAVRWGRHVFGLGGDVTRDAVDQASAN--------------CTG-QYASICQWSAENLPLRAACVDRILVDMPFGIRCGNSVNNSKLYPKAIAEMARVLRL-YGIAVLLVMSKKLL 359
BLAST of mRNA_H-elongata_contig750.15181.1 vs. uniprot
Match: A0A024TEQ6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEQ6_9STRA) HSP 1 Score: 184 bits (467), Expect = 8.510e-48 Identity = 114/304 (37.50%), Postives = 154/304 (50.66%), Query Frame = 2
Query: 590 LTRLESLVYESTMWPAAIDVWRRFRTAKATATVTDSDGSAVGRPGPTRIEQRYGASKNIHPGVMNLKYRVSVIRDGKHPFRSLEASPRLGGAVYDANPTWTVDLTEYDVEVVAFILERSVAVGLFLG-NDRAKHSSNGRVPKEDKALEIGKRLSSLRPSTAYLMLKLANPAPGDVVLDCMCGAGTIPFLGAGWFTEVFFLGGEVDASAIDHLKQNRQLSRRLISPPGVTAMGVSSADACAWDAQSLPLQNGTVDAVVVDMPFGVSCGTPRLIGKLYPLALAEMARVLRPGSGRAVLLVAQPYLL 1498
L ++ +LV + +W ++ VWR R AT DG L++R S +RDGKH + S + +G AV WTV L +++VEVVA +L V +GL L N + + GR+ E L +S+LRPSTAY+ML+LA GDVVLDCMCG GT+P W VF +GG+V + AI N + R I C W A+ LPL+ +VD ++VDMPFG+ CG P +LYP A+ +MARVLRPG G AVLL L+
Sbjct: 94 LAQIGALVEHAPVWKDSVAVWRSGRENAAT------DG---------------------------LRFRASCVRDGKHAYSSETIAGEVGAAVLKRQTGWTVSLVDFNVEVVALVLHHHVVLGLSLAENSKTVNFRGGRLAPEPCRLASLDYISTLRPSTAYMMLQLAKCDAGDVVLDCMCGVGTLPACAVLWGPSVFGIGGDVSSEAIAQAHVNFKCHRAAI---------------CQWSAEKLPLRPNSVDRILVDMPFGMRCGNPVKNARLYPKAIGDMARVLRPG-GVAVLLAMSKKLV 348
BLAST of mRNA_H-elongata_contig750.15181.1 vs. uniprot
Match: A0A3R6WMH3_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WMH3_9STRA) HSP 1 Score: 178 bits (452), Expect = 8.130e-47 Identity = 105/241 (43.57%), Postives = 136/241 (56.43%), Query Frame = 2
Query: 785 LKYRVSVIRDGKHPFRSLEASPRLGGAVYDANPTWTVDLTEYDVEVVAFILERSVAVGLFLGNDRAKHSSN---GRVPKEDKALEIGKRLSSLRPSTAYLMLKLANPAPGDVVLDCMCGAGTIPFLGAGWFTEVFFLGGEVDASAIDHLKQNRQLSRRLISPPGVTAMGVSSADACAWDAQSLPLQNGTVDAVVVDMPFGVSCGTPRLIGKLYPLALAEMARVLRPGSGRAVLLVAQPYLL 1498
L++R S +RDGKH + S + +G AV + +P WTV L+++DVEVVA ++ H+ N GR+ E + L + +S+LRPSTAYLML+LA PGDVVLDCMCG GT+P W VF LGG+V A+D N G +A C W A++LPL+ VD ++VDMPFG+ CG KLYP A+AEMARVLR G AVLLV LL
Sbjct: 37 LRFRGSCVRDGKHAYSSEAIAGAVGTAVLNLHPRWTVSLSDFDVEVVALVMH--------------SHTINYRGGRLAPEARHLSSLQYISTLRPSTAYLMLQLAKCQPGDVVLDCMCGVGTLPACAVRWGRHVFGLGGDVTRDAVDQASAN--------------CTG-QNASICQWSAENLPLRAACVDRILVDMPFGIRCGNSVNNSKLYPKAIAEMARVLRL-HGIAVLLVMSKKLL 247
BLAST of mRNA_H-elongata_contig750.15181.1 vs. uniprot
Match: A0A6G0WHI5_9STRA (UPF0020 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHI5_9STRA) HSP 1 Score: 174 bits (442), Expect = 1.030e-44 Identity = 101/240 (42.08%), Postives = 138/240 (57.50%), Query Frame = 2
Query: 782 NLKYRVSVIRDGKHPFRSLEASPRLGGAVYDANPTWTVDLTEYDVEVVAFILERSVAVGLFLGNDRAKHSSNG-RVPKEDKALEIGKRLSSLRPSTAYLMLKLANPAPGDVVLDCMCGAGTIPFLGAGWFTEVFFLGGEVDASAIDHLKQNRQLSRRLISPPGVTAMGVSSADACAWDAQSLPLQNGTVDAVVVDMPFGVSCGTPRLIGKLYPLALAEMARVLRPGSGRAVLLVAQPYLL 1498
++++R S +RDG H + S + ++G A+ WTV L ++D+EVVA ++ V G+ L D + G R+ E + L + +S+LRPSTAYLML+LA GDVVLDCMCG GTIP + W VF LGG+V A+ + N Q S R A C W ++ LPL+ +VD ++VDMPFG+ CG +LYP AL EMARVLRP +G AVLLV +L
Sbjct: 127 SIRFRASCVRDGTHKYSSEVIAGKVGAAIV-RKFHWTVSLVDFDLEVVAIVMHHDVICGISLAADPKTINFRGARLAPEPRRLASFQYMSTLRPSTAYLMLQLATCNAGDVVLDCMCGVGTIPACSSHW-APVFGLGGDVSPDAVAQARVNLQQSPR--------------AAVCLWSSERLPLRPESVDRILVDMPFGIQCGNATKNSRLYPKALQEMARVLRP-NGTAVLLVLSKKML 349
BLAST of mRNA_H-elongata_contig750.15181.1 vs. uniprot
Match: A0A485LJ24_9STRA (Aste57867_20172 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJ24_9STRA) HSP 1 Score: 172 bits (437), Expect = 7.670e-44 Identity = 111/301 (36.88%), Postives = 153/301 (50.83%), Query Frame = 2
Query: 599 LESLVYESTMWPAAIDVWRRFRTAKATATVTDSDGSAVGRPGPTRIEQRYGASKNIHPGVMNLKYRVSVIRDGKHPFRSLEASPRLGGAVYDANPTWTVDLTEYDVEVVAFILERSVAVGLFLGND-RAKHSSNGRVPKEDKALEIGKRLSSLRPSTAYLMLKLANPAPGDVVLDCMCGAGTIPFLGAGWFTEVFFLGGEVDASAIDHLKQNRQLSRRLISPPGVTAMGVSSADACAWDAQSLPLQNGTVDAVVVDMPFGVSCGTPRLIGKLYPLALAEMARVLRPGSGRAVLLVAQPYLL 1498
+ +LV ++ WPAA+ +W A S S+V ++R S +RDGKH + S + ++G AV A + V L +D+EVV ++ V +GL L +D A + R+ E + + K +S+LRPSTAYLML+LA + GD+VLDCMCG GT+P W V F GG++ A+ N Q R A+ C W + LP+++ VD V+VDMPFG+ CG KLYP A+ EMARVLRPG GRAVLLV LL
Sbjct: 100 IATLVATASTWPAALQLWE--------AHCPQSSASSV-------------------------RFRASCVRDGKHAYSSETIAGKVGAAVV-AKFGYGVSLAAFDLEVVCLVMHHHVVLGLSLADDPEAINFRGSRLAPERRRIPTMKYMSTLRPSTAYLMLQLAECSIGDIVLDCMCGVGTLPASSVFWAPVVAF-GGDISTDAVAQANTNFQGQR---------------ANVCQWSSAHLPVRSNAVDCVLVDMPFGLLCGNSTQNAKLYPKAIKEMARVLRPG-GRAVLLVMSKKLL 349
BLAST of mRNA_H-elongata_contig750.15181.1 vs. uniprot
Match: T0S6C0_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S6C0_SAPDV) HSP 1 Score: 170 bits (431), Expect = 5.600e-43 Identity = 98/241 (40.66%), Postives = 143/241 (59.34%), Query Frame = 2
Query: 782 NLKYRVSVIRDGKHPFRSLEASPRLGGAVYDANPTWTVDLTEYDVEVVAFILERSVAVGLFLGNDRAKHSSNGRVPKEDK--ALEIGKRLSSLRPSTAYLMLKLANPAPGDVVLDCMCGAGTIPFLGAGWFTEVFFLGGEVDASAIDHLKQNRQLSRRLISPPGVTAMGVSSADACAWDAQSLPLQNGTVDAVVVDMPFGVSCGTPRLIGKLYPLALAEMARVLRPGSGRAVLLVAQPYLL 1498
+ ++R S +RDGKH + S + + +GGA+ + + W V LTE+ +EVV F+L V G+ L + R K R+ E++ ++ + +S+LRPSTAY++L+LA GD+VLD MCG GTIP VF LGG+V+ A++ K R ++ R A C WD+Q LPL++G+VD +V+DMPFGV CG+ + KLYP +AE+ RVLR GR VLLV L+
Sbjct: 125 SFRFRASCVRDGKHAYNSEKIAGEVGGALLE-HFGWKVSLTEFHMEVVCFVLHNHVVCGVSLADPR-KIFFKSRLANEERHPSMTSIQYISTLRPSTAYMLLQLARIEAGDIVLDAMCGVGTIPASATYLAAPVFALGGDVEEDAVE--KAGRNVAAR-------------PATICQWDSQRLPLRDGSVDKIVIDMPFGVRCGSHQKNSKLYPRCMAELCRVLRD-HGRIVLLVMSKKLI 347
BLAST of mRNA_H-elongata_contig750.15181.1 vs. uniprot
Match: A0A8K1FNN1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNN1_PYTOL) HSP 1 Score: 170 bits (430), Expect = 1.450e-42 Identity = 99/237 (41.77%), Postives = 135/237 (56.96%), Query Frame = 2
Query: 791 YRVSVIRDGKHPFRSLEASPRLGGAVYDANPTWTVDLTEYDVEVVAFILERSVAVGLFLGNDRAKHSSNGRVPKEDKALEI-GKRLSSLRPSTAYLMLKLANPAPGDVVLDCMCGAGTIPFLGAGWFT-----EVFFLGGEVDASAIDHLKQNRQLSRRLISPPGVTAMGVSSADACAWDAQSLPLQNGTVDAVVVDMPFGVSCGTPRLIGKLYPLALAEMARVLRPGSGRAVLLVA 1483
+R S +RDG+H F+S+E + +GGAV + W VDLT+ D+EVV + + VGL L D K R+ ED+++ K +S+LRPST Y ML+LA GD++LD MCG GTIP W E+F LGGE+D+ + QN Q R + D WD+ LPL+N +VD V++D+PFGV CG R K+YP E+ RV+RPGS RAVLL +
Sbjct: 158 FRGSCVRDGRHAFKSVEVAAEIGGAVAEKFG-WKVDLTQCDLEVVCLVFHTHMIVGLSLA-DTTKIQFRNRMANEDRSIMADSKYVSTLRPSTTYHMLRLAGYKKGDILLDSMCGVGTIPI----WCAQVTENEIFALGGELDSLPVTKAGQNAQTKPR-------------NVDIMQWDSTRLPLRNESVDKVIIDLPFGVRCGNARQHSKIYPKVFKELYRVMRPGS-RAVLLTS 374 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig750.15181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig750.15181.1 >prot_H-elongata_contig750.15181.1 ID=prot_H-elongata_contig750.15181.1|Name=mRNA_H-elongata_contig750.15181.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=641bp MMDNWSLSRERPQPQDRNSNIFDHSRDRYLIICLGGLQPFIKKLVDRHVEback to top mRNA from alignment at H-elongata_contig750:3709..9955+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig750.15181.1 ID=mRNA_H-elongata_contig750.15181.1|Name=mRNA_H-elongata_contig750.15181.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6247bp|location=Sequence derived from alignment at H-elongata_contig750:3709..9955+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig750:3709..9955+ >mRNA_H-elongata_contig750.15181.1 ID=mRNA_H-elongata_contig750.15181.1|Name=mRNA_H-elongata_contig750.15181.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3846bp|location=Sequence derived from alignment at H-elongata_contig750:3709..9955+ (Himanthalia elongata Himel1 dioecious)back to top |