mRNA_H-elongata_contig74899.15168.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74899.15168.1
Unique NamemRNA_H-elongata_contig74899.15168.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig74899.15168.1 vs. uniprot
Match: D7G1Y2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y2_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 8.290e-20
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 2 
Query:  179 QFFDASRVTYLLPGEITVLSKGGRAVEVRATTGDVLGPPWQQAENGYIVRPTIAEG 346
            + F ASR+TY+LPG+ TVLS GGRAVE++ATTG +LGPPWQQAENG IVRP  A+G
Sbjct:  127 EHFPASRITYILPGQSTVLSAGGRAVEIKATTGAILGPPWQQAENGVIVRPVAADG 182
[Close]
BLAST of mRNA_H-elongata_contig74899.15168.1 vs. uniprot
Match: A0A7S4BXP7_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BXP7_CHRCT)

HSP 1 Score: 57.8 bits (138), Expect = 3.730e-8
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 2 
Query:  185 FDASRVTYLLPGEITVLSKGGRAVEVRATTGDVLGPPWQQAENGYIVR-PTIAEG 346
            F  S++TYL  G+  ++S  G +V +RAT+G ++GPPWQ  ENGY++  P+  EG
Sbjct:   86 FAPSQITYLSSGQTKLVSAAGSSVSLRATSGALVGPPWQARENGYVLSSPSAGEG 140
[Close]
BLAST of mRNA_H-elongata_contig74899.15168.1 vs. uniprot
Match: A0A833VBM6_9POAL (Beta-lactamase superfamily domain-containing protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VBM6_9POAL)

HSP 1 Score: 58.5 bits (140), Expect = 1.190e-7
Identity = 29/45 (64.44%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:  200 VTYLLPGEITVLS-KGGRAVEVRATTGDVLGPPWQQAENGYIVRP 331
            VTYL PGE T L  K G  V + AT G VLGPPWQ+ ENGYIV+P
Sbjct:  226 VTYLEPGERTDLEGKSGAKVNICATAGPVLGPPWQRPENGYIVKP 270
[Close]
BLAST of mRNA_H-elongata_contig74899.15168.1 vs. uniprot
Match: A0A200Q444_9MAGN (BRO1 domain n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200Q444_9MAGN)

HSP 1 Score: 58.2 bits (139), Expect = 1.760e-7
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 2 
Query:  194 SRVTYLLPGEIT-VLSKGGRAVEVRATTGDVLGPPWQQAENGYIV 325
            S VTYL PG+ + ++ K G  V+VRAT G VLGPPWQ+ ENGY+V
Sbjct:  495 SNVTYLEPGQNSEIVGKNGSNVQVRATAGPVLGPPWQRPENGYLV 539
[Close]
BLAST of mRNA_H-elongata_contig74899.15168.1 vs. uniprot
Match: A0A7S3XJM1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJM1_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 2.160e-7
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:  176 RQFFDASRVTYLLPGEITVLSKGGRAVEVRATTGDVLGPPWQQAENGYIVR 328
            ++++   RVTYL PG+   +   G+ ++V ATTG ++GPPWQ  ENGYI++
Sbjct:  195 KKYYPEGRVTYLSPGDTIEVEVKGKTLKVTATTGALVGPPWQAKENGYILQ 245
[Close]
BLAST of mRNA_H-elongata_contig74899.15168.1 vs. uniprot
Match: UPI001F5D1220 (uncharacterized protein LOC124691211 n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D1220)

HSP 1 Score: 57.4 bits (137), Expect = 2.850e-7
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 2 
Query:  194 SRVTYLLPGEITVLSKGGRAVEVRATTGDVLGPPWQQAENGYIVRPT 334
            + VTY+ PGE T +  GG  +EV AT G VLGPPWQ+ ENGYI+  T
Sbjct:  166 TNVTYIEPGESTTV--GGGTIEVLATAGPVLGPPWQRPENGYILTTT 210
[Close]
BLAST of mRNA_H-elongata_contig74899.15168.1 vs. uniprot
Match: A0A830DMP6_9LAMI (Uncharacterized protein n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830DMP6_9LAMI)

HSP 1 Score: 55.5 bits (132), Expect = 6.910e-7
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:  194 SRVTYLLPGEITVLS-KGGRAVEVRATTGDVLGPPWQQAENGYIV 325
            S VTYL PG+ + +    G +V +RAT G VLGPPWQ+ ENGYIV
Sbjct:   95 SNVTYLEPGQNSEIKVNNGSSVNIRATAGPVLGPPWQRPENGYIV 139
[Close]
BLAST of mRNA_H-elongata_contig74899.15168.1 vs. uniprot
Match: A0A6P5EXW7_ANACO (uncharacterized protein LOC109710258 isoform X1 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EXW7_ANACO)

HSP 1 Score: 56.2 bits (134), Expect = 7.500e-7
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:  194 SRVTYLLPGEITVLS-KGGRAVEVRATTGDVLGPPWQQAENGYIVR 328
            S VTYL PG+ +VL  K G  +++ AT G +LGPPWQ+ ENGYI++
Sbjct:  191 SNVTYLEPGQKSVLEGKNGTNIQICATKGPILGPPWQRPENGYIIK 236
[Close]
BLAST of mRNA_H-elongata_contig74899.15168.1 vs. uniprot
Match: UPI0019D5CCAB (uncharacterized protein LOC120667174 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5CCAB)

HSP 1 Score: 56.2 bits (134), Expect = 7.630e-7
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 2 
Query:  197 RVTYLLPGEITVLSKGGRAVEVRATTGDVLGPPWQQAENGYIVRPTIAE 343
            RVTYL PG+ T +   G  V+V AT G VLGPPWQ+ ENGYI+  T A+
Sbjct:  199 RVTYLEPGQSTAV---GDQVQVLATAGPVLGPPWQRPENGYILLMTTAD 244
[Close]
BLAST of mRNA_H-elongata_contig74899.15168.1 vs. uniprot
Match: C5YTD8_SORBI (Uncharacterized protein n=3 Tax=Andropogoneae TaxID=147429 RepID=C5YTD8_SORBI)

HSP 1 Score: 56.2 bits (134), Expect = 7.640e-7
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 2 
Query:  197 RVTYLLPGEITVLSKGGRAVEVRATTGDVLGPPWQQAENGYIVRPTIA 340
            RVTYL PG+ TV+++    V V AT G VLGPPWQ+ ENGYI+ P  A
Sbjct:  202 RVTYLEPGQSTVVNQ---QVRVLATAGPVLGPPWQRPENGYILMPAGA 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74899.15168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7G1Y2_ECTSI8.290e-2071.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4BXP7_CHRCT3.730e-845.45Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A833VBM6_9POAL1.190e-764.44Beta-lactamase superfamily domain-containing prote... [more]
A0A200Q444_9MAGN1.760e-760.00BRO1 domain n=1 Tax=Macleaya cordata TaxID=56857 R... [more]
A0A7S3XJM1_HETAK2.160e-745.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI001F5D12202.850e-757.45uncharacterized protein LOC124691211 n=2 Tax=Loliu... [more]
A0A830DMP6_9LAMI6.910e-757.78Uncharacterized protein n=1 Tax=Phtheirospermum ja... [more]
A0A6P5EXW7_ANACO7.500e-754.35uncharacterized protein LOC109710258 isoform X1 n=... [more]
UPI0019D5CCAB7.630e-757.14uncharacterized protein LOC120667174 n=1 Tax=Panic... [more]
C5YTD8_SORBI7.640e-758.33Uncharacterized protein n=3 Tax=Andropogoneae TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74899contigH-elongata_contig74899:147..1399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue3e-07
Seed eggNOG ortholog2880.D7G1Y2
EggNOG free text desc.Beta-lactamase superfamily domain
EggNOG OGs2QQUU@2759,COG2220@1
Ec32 ortholog descriptionBeta-lactamase-like
Ec32 orthologEc-07_003700.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size346
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74899.15168.1prot_H-elongata_contig74899.15168.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74899 151..1342 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.7828705-UTR-H-elongata_contig74899:146..1501622931153.7828705-UTR-H-elongata_contig74899:146..150Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74899 147..150 -
1691679720.427081-UTR-H-elongata_contig74899:146..1501691679720.427081-UTR-H-elongata_contig74899:146..150Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74899 147..150 -
1622931153.8603463-UTR-H-elongata_contig74899:1342..13991622931153.8603463-UTR-H-elongata_contig74899:1342..1399Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74899 1343..1399 -
1691679720.492761-UTR-H-elongata_contig74899:1342..13991691679720.492761-UTR-H-elongata_contig74899:1342..1399Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74899 1343..1399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.8031454-CDS-H-elongata_contig74899:150..3111622931153.8031454-CDS-H-elongata_contig74899:150..311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74899 151..311 -
1691679720.4457712-CDS-H-elongata_contig74899:150..3111691679720.4457712-CDS-H-elongata_contig74899:150..311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74899 151..311 -
1622931153.81988-CDS-H-elongata_contig74899:624..7111622931153.81988-CDS-H-elongata_contig74899:624..711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74899 625..711 -
1691679720.4654257-CDS-H-elongata_contig74899:624..7111691679720.4654257-CDS-H-elongata_contig74899:624..711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74899 625..711 -
1622931153.83638-CDS-H-elongata_contig74899:1305..13421622931153.83638-CDS-H-elongata_contig74899:1305..1342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74899 1306..1342 -
1691679720.4823825-CDS-H-elongata_contig74899:1305..13421691679720.4823825-CDS-H-elongata_contig74899:1305..1342Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74899 1306..1342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74899.15168.1

>prot_H-elongata_contig74899.15168.1 ID=prot_H-elongata_contig74899.15168.1|Name=mRNA_H-elongata_contig74899.15168.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MVISQGFNDHCHPPTLRALASLLDPSVGIVAPSSARTAIEAIFRRLASHV
PASGRDNGPFQGWSRGRGTGDDRGRPGASMAAGREWLHRSPHDR*
back to top

mRNA from alignment at H-elongata_contig74899:147..1399-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74899.15168.1 ID=mRNA_H-elongata_contig74899.15168.1|Name=mRNA_H-elongata_contig74899.15168.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1253bp|location=Sequence derived from alignment at H-elongata_contig74899:147..1399- (Himanthalia elongata Himel1 dioecious)
AAGGTTCTCTGGGATAGCGACCGCGTAACTAGGGACTTGGCTGCGGTGAC
GGACTTCATGGTGATATCCCAGGGCTTTAATGACCACTGTCACCGTGAGA
GATCGTCTTCTAGTACGTTGACATGTTGTTCACTCCTTCCTCCATTCGAC
TCGCTTTCTCAACTCCCCTCCCCCCCCACCGAAAACGGGAAACGGTGAAT
GCGGTAGCCGCGCTCCTAGTTTACCGAACCGCCGTGGTAGAGCTATGCGG
TAGCGTTTGTCACGTTCCGTCGTCACGCGGCATAGCCACAGGACCAACGC
GACGGTCGCACGCGCTTGCGCCCGAGAGACTAACGGATTACCTTCTTCGG
CTGTTGGGGGCCTGAGGACTCTGCCGCGCCCATGGCGTGCATGCCCTCGG
TTCGTAGTAGTGAGAAATGGAAGATTGATCGATCAGAAACGTACCGTACG
AGGAAGTGCTGCGGCTTCGCCCGGACTTTCACTTGCGTTATAGGAAACGA
GGTGCCGTCATACCAGCGGCTCCCGCGACGATCCCCCAGCTGTACCCTCA
CCTTGAGAGATCGTGGAGGTACGCAGCGAACTTGTTTTTCCTACCGAACA
CGACATGTCGTATTTCGAGGAGTACACTTTCTTTCGCACTCCGTCACGTT
GCCGAGTCCGTCCCCCCTCCGTCGTCGCCATCTCTCAGCTCCAACTCTGC
GGGCCTTGGCCAGCCTTCTCGACCCGTCTGTGGGCATCGTTGCCCCTTCG
AGCGCGCGGACGGCAATCGAGGCAAGTCCCCCACAACCCTATATATAACT
ATATAAATATTTCCATCGGACGCGTCATTCTAAAACGAAAATCCCAGCGC
AGCGTCTCATTTTCTTATTTCTAGTGTAACCTTTTTTATTTTTAAAACAA
GAAAACAGACAAATACGTGTGCACACTTGCGGTATCGCGGAGCTTGCCAC
GGATCCGCCCGCGGCAGGCTCATCCGCTGCAACGGCGCTGCTGTCAGGCA
ACCCTCGTTCCCTGTCGTCGGTTTTGCCACCCGTTGAACTGCCTCTCGGC
CTTGCTGTTCTGGGTGTATTTCATCTAAACTCCAGGAGTTTTTCGACGCC
TCGCGAGTCACGTACCTGCTTCCGGGAGAGATAACGGTCCTTTCCAAGGG
TGGTCGCGCGGTAGAGGTACGGGCGACGACCGGGGACGTCCTGGGGCCTC
CATGGCAGCAGGCCGAGAATGGCTACATCGTTCGCCCCACGATCGCTGAA
GGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig74899:147..1399-

>mRNA_H-elongata_contig74899.15168.1 ID=mRNA_H-elongata_contig74899.15168.1|Name=mRNA_H-elongata_contig74899.15168.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig74899:147..1399- (Himanthalia elongata Himel1 dioecious)
ATGGTGATATCCCAGGGCTTTAATGACCACTGTCACCATGGTGATATCCC
AGGGCTTTAATGACCACTGTCACCCTCCAACTCTGCGGGCCTTGGCCAGC
CTTCTCGACCCGTCTGTGGGCATCGTTGCCCCTTCGAGCGCGCGGACGGC
AATCGAGGCAACTCCAACTCTGCGGGCCTTGGCCAGCCTTCTCGACCCGT
CTGTGGGCATCGTTGCCCCTTCGAGCGCGCGGACGGCAATCGAGGCAATT
TTTCGACGCCTCGCGAGTCACGTACCTGCTTCCGGGAGAGATAACGGTCC
TTTCCAAGGGTGGTCGCGCGGTAGAGGTACGGGCGACGACCGGGGACGTC
CTGGGGCCTCCATGGCAGCAGGCCGAGAATGGCTACATCGTTCGCCCCAC
GATCGCTGATTTTTCGACGCCTCGCGAGTCACGTACCTGCTTCCGGGAGA
GATAACGGTCCTTTCCAAGGGTGGTCGCGCGGTAGAGGTACGGGCGACGA
CCGGGGACGTCCTGGGGCCTCCATGGCAGCAGGCCGAGAATGGCTACATC
GTTCGCCCCACGATCGCTGA
back to top